prot_Ecto-sp13_S_contig13033.2489.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig13033.2489.1
Unique Name	prot_Ecto-sp13_S_contig13033.2489.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	401

Homology

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BLAST of mRNA_Ecto-sp13_S_contig13033.2489.1 vs. uniprot
Match: D7G6G9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G9_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 1.650e-111
Identity = 272/318 (85.53%), Postives = 275/318 (86.48%), Query Frame = 0

Query:   82 VSGXGHHLPATAARPLATNAAWVVKPASYSLPLPNTTAAAVXXXXXAHDPXSSSTELHLAEDQQLSLAPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXNGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLSIPRRHTSTASAGGASLIGTSGRDVPAEIVTTGVAAGAAAVDNTALLEDEDDHLSDGGIGFKVEYYERVPPAVPWGGGANGGEXXXXGAAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERV 399
            VSG GHHLPATAARPLATNAAWVVKPASYSLP PN TA AV     AH P  SSTELHLAE +QLSLAPGQ    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          NGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLS+PRRH S+ASA G SLIGTSGRDVPAEI TTG A        TALLEDEDDHLSDGGIG KVEYYERVPPAV WGGGANGGEXXXXGAAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAER 
Sbjct:  112 VSGGGHHLPATAARPLATNAAWVVKPASYSLPPPNATALAVTAAAPAHAPPPSSTELHLAEGRQLSLAPGQQPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------NGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLSVPRRHPSSASARGGSLIGTSGRDVPAEIGTTGGAXXXXXXXXTALLEDEDDHLSDGGIGSKVEYYERVPPAVSWGGGANGGEXXXXGAAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERT 419

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BLAST of mRNA_Ecto-sp13_S_contig13033.2489.1 vs. uniprot
Match: A0A6H5L6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z7_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 5.490e-96
Identity = 307/399 (76.94%), Postives = 309/399 (77.44%), Query Frame = 0

Query:    1 MQHEADMMLSSSTNRWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGXGHHLPATAARPLATNAAWVVKPASYSLPLPNTTAAAVXXXXXAHDPXSSSTELHLAEDQQLSLAPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXNGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLSIPRRHTSTASAGGASLIGTSGRDVPAEIVTTGVAAGAAAVDNTALLEDEDDHLSDGGIGFKVEYYERVPPAVPWGGGANGGEXXXXGAAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERV 399
            MQHEADMMLSSSTNRWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   X HHLPATA RP ATNAAWVVKPASYSLP  NTTAAA XXXX A  P SS TELH AEDQQLSLAPGQ                                         XXXXXXXXXXXXXXXXXXXXXXXXX          AGTIATLILASL+TYALYNASVEALAGQRTRLSIPRRH S+ASAGGASLIGTSGRDVPAEIVTTG              EDEDDHLSDGGIGFKVEYYERVP AV WGGGANG  XXXX  AVAGWGKGVSVVTVSAWQTLAALG GFLMSRFWRRFRRPEVRALSD ER 
Sbjct:    1 MQHEADMMLSSSTNRWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHLPATATRPFATNAAWVVKPASYSLPPSNTTAAAXXXXXPARAPPSSLTELHPAEDQQLSLAPGQQPPSQQPQAGGRRRQGRGGYRGSIPSPPPLATQQFETCRQQXXXXXXXXXXXXXXXXXXXXXXXXX----------AGTIATLILASLITYALYNASVEALAGQRTRLSIPRRHPSSASAGGASLIGTSGRDVPAEIVTTGXXXXXXXXXXXXXXEDEDDHLSDGGIGFKVEYYERVPTAVSWGGGANGXXXXXXXXAVAGWGKGVSVVTVSAWQTLAALGFGFLMSRFWRRFRRPEVRALSDGERT 389

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig13033.2489.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig13033.2489.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G6G9_ECTSI	1.650e-111	85.53	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L6Z7_9PHAE	5.490e-96	76.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..364
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 383..400
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 365..382

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig13033	contig	Ecto-sp13_S_contig13033:203..1405 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig13033.2489.1	mRNA_Ecto-sp13_S_contig13033.2489.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig13033 203..1405 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig13033.2489.1 ID=prot_Ecto-sp13_S_contig13033.2489.1|Name=mRNA_Ecto-sp13_S_contig13033.2489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp
MQHEADMMLSSSTNRWRKRPPNQAGGSASGGSGSSSRRSPNTAAADRRRL
DPPPAVSVGAHSSRTGAEQQPHHFYYPATAGVSGGGHHLPATAARPLATN
AAWVVKPASYSLPLPNTTAAAVTAAAPAHDPPSSSTELHLAEDQQLSLAP
GQQPPSQQLQEGGRRRQGRGGYRGPLPPPPPPATQQFETYRQQQQQPQQQ
QQQPQQQQQQSSGGGGGGSGGNGRGSASAGTIATLILASLLTYALYNASV
EALAGQRTRLSIPRRHTSTASAGGASLIGTSGRDVPAEIVTTGVAAGAAA
VDNTALLEDEDDHLSDGGIGFKVEYYERVPPAVPWGGGANGGEGGDGGAA
VAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERVS
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