mRNA_Ecto-sp13_S_contig13033.2489.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13033.2489.1
Unique NamemRNA_Ecto-sp13_S_contig13033.2489.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13033.2489.1 vs. uniprot
Match: D7G6G9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G9_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 1.650e-111
Identity = 272/318 (85.53%), Postives = 275/318 (86.48%), Query Frame = 1 
Query:  244 VSGXGHHLPATAARPLATNAAWVVKPASYSLPLPNTTAAAVXXXXXAHDPXSSSTELHLAEDQQLSLAPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXNGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLSIPRRHTSTASAGGASLIGTSGRDVPAEIVTTGVAAGAAAVDNTALLEDEDDHLSDGGIGFKVEYYERVPPAVPWGGGANGGEXXXXGAAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERV 1197
            VSG GHHLPATAARPLATNAAWVVKPASYSLP PN TA AV     AH P  SSTELHLAE +QLSLAPGQ    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          NGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLS+PRRH S+ASA G SLIGTSGRDVPAEI TTG A        TALLEDEDDHLSDGGIG KVEYYERVPPAV WGGGANGGEXXXXGAAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAER 
Sbjct:  112 VSGGGHHLPATAARPLATNAAWVVKPASYSLPPPNATALAVTAAAPAHAPPPSSTELHLAEGRQLSLAPGQQPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------NGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLSVPRRHPSSASARGGSLIGTSGRDVPAEIGTTGGAXXXXXXXXTALLEDEDDHLSDGGIGSKVEYYERVPPAVSWGGGANGGEXXXXGAAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERT 419
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13033.2489.1 vs. uniprot
Match: A0A6H5L6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z7_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 5.490e-96
Identity = 307/399 (76.94%), Postives = 309/399 (77.44%), Query Frame = 1 
Query:    1 MQHEADMMLSSSTNRWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGXGHHLPATAARPLATNAAWVVKPASYSLPLPNTTAAAVXXXXXAHDPXSSSTELHLAEDQQLSLAPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXNGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLSIPRRHTSTASAGGASLIGTSGRDVPAEIVTTGVAAGAAAVDNTALLEDEDDHLSDGGIGFKVEYYERVPPAVPWGGGANGGEXXXXGAAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERV 1197
            MQHEADMMLSSSTNRWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   X HHLPATA RP ATNAAWVVKPASYSLP  NTTAAA XXXX A  P SS TELH AEDQQLSLAPGQ                                         XXXXXXXXXXXXXXXXXXXXXXXXX          AGTIATLILASL+TYALYNASVEALAGQRTRLSIPRRH S+ASAGGASLIGTSGRDVPAEIVTTG              EDEDDHLSDGGIGFKVEYYERVP AV WGGGANG  XXXX  AVAGWGKGVSVVTVSAWQTLAALG GFLMSRFWRRFRRPEVRALSD ER 
Sbjct:    1 MQHEADMMLSSSTNRWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHLPATATRPFATNAAWVVKPASYSLPPSNTTAAAXXXXXPARAPPSSLTELHPAEDQQLSLAPGQQPPSQQPQAGGRRRQGRGGYRGSIPSPPPLATQQFETCRQQXXXXXXXXXXXXXXXXXXXXXXXXX----------AGTIATLILASLITYALYNASVEALAGQRTRLSIPRRHPSSASAGGASLIGTSGRDVPAEIVTTGXXXXXXXXXXXXXXEDEDDHLSDGGIGFKVEYYERVPTAVSWGGGANGXXXXXXXXAVAGWGKGVSVVTVSAWQTLAALGFGFLMSRFWRRFRRPEVRALSDGERT 389
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13033.2489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6G9_ECTSI1.650e-11185.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Z7_9PHAE5.490e-9676.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13033contigEcto-sp13_S_contig13033:203..1405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1203
Hectar predicted targeting categoryother localisation
Exons1
Cds size1203
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462698.4214587-CDS-Ecto-sp13_S_contig13033:202..14051681462698.4214587-CDS-Ecto-sp13_S_contig13033:202..1405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13033 203..1405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13033.2489.1prot_Ecto-sp13_S_contig13033.2489.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13033 203..1405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13033.2489.1

>prot_Ecto-sp13_S_contig13033.2489.1 ID=prot_Ecto-sp13_S_contig13033.2489.1|Name=mRNA_Ecto-sp13_S_contig13033.2489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp
MQHEADMMLSSSTNRWRKRPPNQAGGSASGGSGSSSRRSPNTAAADRRRL
DPPPAVSVGAHSSRTGAEQQPHHFYYPATAGVSGGGHHLPATAARPLATN
AAWVVKPASYSLPLPNTTAAAVTAAAPAHDPPSSSTELHLAEDQQLSLAP
GQQPPSQQLQEGGRRRQGRGGYRGPLPPPPPPATQQFETYRQQQQQPQQQ
QQQPQQQQQQSSGGGGGGSGGNGRGSASAGTIATLILASLLTYALYNASV
EALAGQRTRLSIPRRHTSTASAGGASLIGTSGRDVPAEIVTTGVAAGAAA
VDNTALLEDEDDHLSDGGIGFKVEYYERVPPAVPWGGGANGGEGGDGGAA
VAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERVS
*
back to top

mRNA from alignment at Ecto-sp13_S_contig13033:203..1405-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13033.2489.1 ID=mRNA_Ecto-sp13_S_contig13033.2489.1|Name=mRNA_Ecto-sp13_S_contig13033.2489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13033:203..1405- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCATGAGGCAGACATGATGCTGAGCTCATCCACCAACCGCTGGCG
GAAGCGGCCGCCAAACCAGGCCGGCGGCTCGGCCAGCGGGGGTTCCGGTA
GCAGCAGCCGGAGATCCCCCAACACCGCGGCGGCAGACCGGCGGCGCCTT
GACCCTCCTCCTGCGGTGTCCGTGGGCGCGCACTCGTCAAGAACAGGGGC
GGAGCAGCAGCCGCATCACTTCTACTACCCGGCTACAGCAGGGGTCAGCG
GCGGTGGCCATCACCTTCCCGCGACGGCGGCACGGCCGTTGGCAACGAAC
GCCGCTTGGGTGGTGAAACCCGCGTCCTACTCGCTGCCGCTGCCGAACAC
GACGGCGGCGGCGGTGACGGCGGCCGCCCCAGCGCACGACCCTCCCTCAT
CGTCGACCGAGCTCCACTTGGCTGAGGACCAGCAGCTTTCCCTTGCCCCC
GGTCAGCAGCCGCCGTCGCAGCAGCTTCAGGAGGGAGGCCGTCGGAGACA
AGGACGAGGCGGATACAGAGGACCACTACCACCACCACCACCACCAGCCA
CGCAGCAGTTTGAAACGTACCGCCAACAGCAACAACAACCACAGCAGCAG
CAACAACAACCACAGCAGCAGCAACAGCAGTCAAGCGGCGGCGGCGGCGG
CGGCAGCGGCGGCAACGGGAGGGGTAGTGCAAGCGCCGGCACGATCGCGA
CCCTGATCCTCGCCTCCCTGCTAACCTACGCCCTCTACAACGCCTCGGTG
GAGGCTCTGGCGGGACAGCGGACTAGACTGTCAATCCCCCGTCGCCACAC
CTCTACCGCTTCGGCGGGAGGAGCGAGCTTGATCGGAACGTCCGGACGCG
ACGTCCCCGCCGAGATAGTCACCACGGGCGTCGCCGCTGGCGCCGCTGCC
GTCGACAACACCGCGCTGCTCGAAGACGAAGACGACCATCTTTCAGACGG
CGGCATTGGCTTCAAGGTCGAGTACTACGAGCGCGTACCCCCGGCGGTGC
CGTGGGGGGGCGGCGCCAATGGAGGGGAGGGGGGCGACGGAGGAGCCGCG
GTGGCCGGGTGGGGTAAGGGAGTCTCTGTGGTGACCGTGAGCGCGTGGCA
AACCCTGGCGGCTCTCGGGGTCGGGTTTTTGATGTCCAGGTTCTGGAGGC
GTTTTAGGCGGCCGGAAGTCAGAGCGCTGAGCGACGCGGAGCGTGTGAGT
TAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13033:203..1405-

>mRNA_Ecto-sp13_S_contig13033.2489.1 ID=mRNA_Ecto-sp13_S_contig13033.2489.1|Name=mRNA_Ecto-sp13_S_contig13033.2489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13033:203..1405- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCATGAGGCAGACATGATGCTGAGCTCATCCACCAACCGCTGGCG
GAAGCGGCCGCCAAACCAGGCCGGCGGCTCGGCCAGCGGGGGTTCCGGTA
GCAGCAGCCGGAGATCCCCCAACACCGCGGCGGCAGACCGGCGGCGCCTT
GACCCTCCTCCTGCGGTGTCCGTGGGCGCGCACTCGTCAAGAACAGGGGC
GGAGCAGCAGCCGCATCACTTCTACTACCCGGCTACAGCAGGGGTCAGCG
GCGGTGGCCATCACCTTCCCGCGACGGCGGCACGGCCGTTGGCAACGAAC
GCCGCTTGGGTGGTGAAACCCGCGTCCTACTCGCTGCCGCTGCCGAACAC
GACGGCGGCGGCGGTGACGGCGGCCGCCCCAGCGCACGACCCTCCCTCAT
CGTCGACCGAGCTCCACTTGGCTGAGGACCAGCAGCTTTCCCTTGCCCCC
GGTCAGCAGCCGCCGTCGCAGCAGCTTCAGGAGGGAGGCCGTCGGAGACA
AGGACGAGGCGGATACAGAGGACCACTACCACCACCACCACCACCAGCCA
CGCAGCAGTTTGAAACGTACCGCCAACAGCAACAACAACCACAGCAGCAG
CAACAACAACCACAGCAGCAGCAACAGCAGTCAAGCGGCGGCGGCGGCGG
CGGCAGCGGCGGCAACGGGAGGGGTAGTGCAAGCGCCGGCACGATCGCGA
CCCTGATCCTCGCCTCCCTGCTAACCTACGCCCTCTACAACGCCTCGGTG
GAGGCTCTGGCGGGACAGCGGACTAGACTGTCAATCCCCCGTCGCCACAC
CTCTACCGCTTCGGCGGGAGGAGCGAGCTTGATCGGAACGTCCGGACGCG
ACGTCCCCGCCGAGATAGTCACCACGGGCGTCGCCGCTGGCGCCGCTGCC
GTCGACAACACCGCGCTGCTCGAAGACGAAGACGACCATCTTTCAGACGG
CGGCATTGGCTTCAAGGTCGAGTACTACGAGCGCGTACCCCCGGCGGTGC
CGTGGGGGGGCGGCGCCAATGGAGGGGAGGGGGGCGACGGAGGAGCCGCG
GTGGCCGGGTGGGGTAAGGGAGTCTCTGTGGTGACCGTGAGCGCGTGGCA
AACCCTGGCGGCTCTCGGGGTCGGGTTTTTGATGTCCAGGTTCTGGAGGC
GTTTTAGGCGGCCGGAAGTCAGAGCGCTGAGCGACGCGGAGCGTGTGAGT
TAG
back to top