mRNA_Ecto-sp13_S_contig1303.2487.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1303.2487.1 vs. uniprot
Match: D7FSP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP0_ECTSI) HSP 1 Score: 604 bits (1557), Expect = 1.420e-196 Identity = 351/441 (79.59%), Postives = 378/441 (85.71%), Query Frame = 3
Query: 1800 CGPGC-SEYGGIAGASS-GEIRVCCADFCTDDTDDTDGVCTEDDVCADRGGAVNCCPDTVAQSNKECAGEFDA-PCIPVVGTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLSTSDPDGTSSAVIALSVLLAALVLGNIACFAWCLIRRRKEPPTPPPAGRRDANTEVELGRLRRDLETEHTRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPSLNGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPNRMNALAGVVLQRCEEPADRSLANEIISGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSVVHRDWAPYSKAPAGQSCYIVFPAIRPQEGRPTSNAKIGVVRLPS 3113
C GC +++ GI G ++ G+++VCCA+ C G + D C+ G +CCPD++A+S+ EC + A PCI + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GTSSAVIALSVLLAALVLGNIACFAWCL+RRR PAGRRDANTEVELGRLRRDLETEHTRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHP+LNGT+LSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADP+RM+ALAGVVLQRC EPADRSLANEI+SGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDS++HRDWAPYSKAPAGQSC IVFPAIRPQEGRPTSNAKIGVVRLP+
Sbjct: 89 CILGCENDHKGITGTNTNGDVQVCCANSC--------GNTCDQDTCSTYGDDDSCCPDSIAESDTECGVDSGAAPCI--LDDSTEGDDDTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTSSAVIALSVLLAALVLGNIACFAWCLMRRRXXXXXXXPAGRRDANTEVELGRLRRDLETEHTRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPALNGTVLSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPDRMDALAGVVLQRCGEPADRSLANEILSGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSIIHRDWAPYSKAPAGQSCSIVFPAIRPQEGRPTSNAKIGVVRLPA 519
BLAST of mRNA_Ecto-sp13_S_contig1303.2487.1 vs. uniprot
Match: A0A6H5KFA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA2_9PHAE) HSP 1 Score: 584 bits (1505), Expect = 1.240e-191 Identity = 287/306 (93.79%), Postives = 298/306 (97.39%), Query Frame = 3
Query: 2196 TSSAVIALSVLLAALVLGNIACFAWCLIRRRKEPPTPPPAGRRDANTEVELGRLRRDLETEHTRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPSLNGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPNRMNALAGVVLQRCEEPADRSLANEIISGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSVVHRDWAPYSKAPAGQSCYIVFPAIRPQEGRPTSNAKIGVVRLPS 3113
TSSA +ALSVLLAALVLGNIACFAW L+RRRKEPPTPP AGRRDANTEVELGRLRRDLETEH+RRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHP++NGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADP+RMNALAGVVL+RCEEPAD SLANEIISG WPSFEALMKNYL+VFVEMALQKPRVEFEDNLGDA+TFDSVVHRDWAPYSKAPAGQSC IVFPA+RPQEGRP SNAKIGVVRLP+
Sbjct: 44 TSSAFVALSVLLAALVLGNIACFAWFLMRRRKEPPTPPSAGRRDANTEVELGRLRRDLETEHSRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPAVNGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPDRMNALAGVVLRRCEEPADESLANEIISGPAWPSFEALMKNYLMVFVEMALQKPRVEFEDNLGDAVTFDSVVHRDWAPYSKAPAGQSCSIVFPALRPQEGRPMSNAKIGVVRLPA 349
BLAST of mRNA_Ecto-sp13_S_contig1303.2487.1 vs. uniprot
Match: A0A6H5KA22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA22_9PHAE) HSP 1 Score: 421 bits (1082), Expect = 3.650e-131 Identity = 216/306 (70.59%), Postives = 241/306 (78.76%), Query Frame = 3
Query: 2196 TSSAVIALSVLLAALVLGNIACFAWCLIRRRKEPPTPPPAGRRDANTEVELGRLRRDLETEHTRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPSLNGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPNRMNALAGVVLQRCEEPADRSLANEIISGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSVVHRDWAPYSKAPAGQSCYIVFPAIRPQEGRPTSNAKIGVVRLPS 3113
+++ V+ LS +L ALVLGN A A AG A +VE+ RLRRDLETEHTRRVKAETL+HR+ GGGLR G FP VRDVYQHV LADDALAWTEKA AVGGS + GT SVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDE +LDTQYVLYECLC+ Y+ IV +P+RM+ LAG++LQRC EPADR LANEI+SGATWPSFEALMKNYLLVFVEM LQKP ++FEDNLGD + FD H D APYSKAP Q C IVFP+IRPQE P SNAKIGVVR+P+
Sbjct: 20 STTGVVVLSGILGALVLGNAAWLACXXXXXXXXXXXX--AGGYGATEDVEVDRLRRDLETEHTRRVKAETLIHRSSGGGLRPGAFPGVRDVYQHVGHLADDALAWTEKAFAVGGSRQAWYGTTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEKSLDTQYVLYECLCRKYRTIVSTEPDRMDELAGLILQRCGEPADRGLANEIMSGATWPSFEALMKNYLLVFVEMTLQKPGIDFEDNLGDNVAFDPAEHCDLAPYSKAPTAQHCSIVFPSIRPQEAHPHSNAKIGVVRVPA 323
BLAST of mRNA_Ecto-sp13_S_contig1303.2487.1 vs. uniprot
Match: D7FSP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP1_ECTSI) HSP 1 Score: 394 bits (1013), Expect = 9.500e-121 Identity = 197/266 (74.06%), Postives = 219/266 (82.33%), Query Frame = 3
Query: 2316 GRRDANTEVELGRLRRDLETEHTRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPSLNGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPNRMNALAGVVLQRCEEPADRSLANEIISGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSVVHRDWAPYSKAPAGQSCYIVFPAIRPQEGRPTSNAKIGVVRLPS 3113
G A +VE+GRLRRDL+TEHTRRV AETL+HR+ GGGLR G FPSV DVYQHV LADDALAWTEKA AVGGS + GT SVLYNTFLVCREEVQRCLDERLQ LSAFLGN EPILLSAGDE +LD QYVLYECLC+ Y+ IV +P+RM+ LA ++LQRC EPADR LANEI SGATWPSFEALMKNYLLVFVEMALQKP ++FED+LGD + FD H D APYS+AP Q C IVFP+IRPQE P SNAKIGVVR+P+
Sbjct: 108 GGHGATEDVEVGRLRRDLDTEHTRRVNAETLIHRSSGGGLRPGVFPSVGDVYQHVGHLADDALAWTEKAFAVGGSRQTWYGTTRSVLYNTFLVCREEVQRCLDERLQILSAFLGNAEPILLSAGDEKSLDPQYVLYECLCRKYRTIVSTEPDRMDELARLILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFVEMALQKPGIDFEDSLGDNVAFDPAEHCDLAPYSRAPTAQHCSIVFPSIRPQEAHPHSNAKIGVVRVPA 373
BLAST of mRNA_Ecto-sp13_S_contig1303.2487.1 vs. uniprot
Match: D7FRD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD0_ECTSI) HSP 1 Score: 261 bits (666), Expect = 1.390e-73 Identity = 153/314 (48.73%), Postives = 194/314 (61.78%), Query Frame = 3
Query: 2220 SVLLAALVLGNIACFAWCLIRRRKEPPTPPPAGRRDANTEVELGRLRRDLETEHTRRVKAE--------------TLVHRAKGGGLRSG-DFPSVRDVYQHV-YQLADDALAWTEKACAVGGSHPSLNGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPNRMNALAGVVLQRCEEPADRSLANEIISGATWPSFEALMKNYLLVFVEMALQKPRVEF-EDNLGDAMTFDSVVHRDWAPYSKAPAGQSCYIVFPAIRPQEGRPTSNAKIGVVRLP 3110
+VLL+ALVLGN+AC AW +RR K PPT P R + EL LR+ + TE +RR AE +LV R++ G+R G DFPSVR V Q + + L DDAL WTEK +GGS L TI +VL +TF VCR+E RCLD RL+ + LG DEPI LS MNLDT+YVLY CLC++Y+ IV P+++ LA ++QRC+ D LA I SG P F+ALMK+YL VF+ M LQ P + F +D+LG TFD +HR WAP S P GQ C IVFP+I + GR + KIGVV +P
Sbjct: 66 AVLLSALVLGNVACAAWYFLRRCKTPPTRLPH-HRSGIADAELDTLRKKVATEKSRRELAEADMEAARRQLNAYESLVLRSEVKGVRPGNDFPSVRSVLQEIKHGLIDDALRWTEKVSTLGGSQAGLTATIRAVLEHTFHVCRKEAMRCLDNRLRAFTECLGEDEPISLSGDKSMNLDTEYVLYTCLCRNYKTIVSMKPSQVQNLAVTIVQRCKGHED--LAGSITSGNARPFFDALMKHYLQVFIVMGLQNPPMGFKDDDLGMNTTFDGSLHRYWAPCSNTPIGQQCTIVFPSIVLEGGRVNNVVKIGVVHVP 376
BLAST of mRNA_Ecto-sp13_S_contig1303.2487.1 vs. uniprot
Match: A0A6H5JCP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP3_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.450e-13 Identity = 73/257 (28.40%), Postives = 112/257 (43.58%), Query Frame = 3
Query: 2343 ELGRLRRDLETEHTRRVKAETLVHRAKGG------GLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPSLNGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSA-------------------------GDEMNLDTQYVLYECLCKDYQRIVPADPNRMNALAGVVLQRCEEPADRSLANEIISGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSVVHRDWAPYSKAPA 3020
++ RLR L+TE +RR+ AET + G G+ GD Q L + +K L + S+L + F CR EV+R L R+ L AF+G E + L + G M DT +LY L + ++ I + L+ VL R + + ++ TWP+FE ++++YL +FVE ALQ+P++EF++ G FD HR A +S APA
Sbjct: 241 DIQRLRSLLDTERSRRMAAETALSVGGGSVSSRRSGMCGGDGSGETKAEQLYSSLGQPQQSREQK-------QKMLLSVVTSILVHLFHCCRVEVRRRLRVRVDGLRAFVGEAEFVQLGSIVSGPGTGGPKASLAAAAGAAGATPGGVMAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEIGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFS-APA 489
BLAST of mRNA_Ecto-sp13_S_contig1303.2487.1 vs. uniprot
Match: D8LEG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG1_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 4.080e-7 Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 3
Query: 2694 MNLDTQYVLYECLCKDYQRIVPADPNRMNALAGVVLQRCEEPADRSLANEIISGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSVVHRDWAPYS 3008
M DT +LY L + ++ I + L+ VL R + + ++ TWP+FE ++++YL +FVE ALQ+P++EF++ G FD HR A +S
Sbjct: 1 MAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEVGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKHRPLASFS 105 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1303.2487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1303.2487.1 >prot_Ecto-sp13_S_contig1303.2487.1 ID=prot_Ecto-sp13_S_contig1303.2487.1|Name=mRNA_Ecto-sp13_S_contig1303.2487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=454bp MFRPAPTLGFSLATFCGPGCSEYGGIAGASSGEIRVCCADFCTDDTDDTDback to top mRNA from alignment at Ecto-sp13_S_contig1303:6035..14548+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1303.2487.1 ID=mRNA_Ecto-sp13_S_contig1303.2487.1|Name=mRNA_Ecto-sp13_S_contig1303.2487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8514bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1303:6035..14548+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1303:6035..14548+ >mRNA_Ecto-sp13_S_contig1303.2487.1 ID=mRNA_Ecto-sp13_S_contig1303.2487.1|Name=mRNA_Ecto-sp13_S_contig1303.2487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1362bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1303:6035..14548+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |