mRNA_Ecto-sp13_S_contig13024.2484.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13024.2484.1
Unique NamemRNA_Ecto-sp13_S_contig13024.2484.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13024.2484.1 vs. uniprot
Match: A0A6H5K9V8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V8_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 7.070e-48
Identity = 106/159 (66.67%), Postives = 106/159 (66.67%), Query Frame = 1 
Query:    1 QLFHRFERYQVDVKVDLNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLSSAAKLTRGDLMR-----------------------------------GESRNRARRKGNXXXXXXXXXSGGGVAEKRARVRCFRCGKMGHRIAEC 372
            QLFHRFERYQVDV VD NVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQE EVAKENLSSA KLTRGDLMR                                    ESRNR      XXXXXXXXX     AEKRA VRCFRCGK GHRIAEC
Sbjct:   37 QLFHRFERYQVDVMVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKENLSSAEKLTRGDLMRVTGTRYNTLCSQREAEKSHTRAAEQAFFTADGAGKDESRNRXXXXXXXXXXXXXXXXXXXGAEKRACVRCFRCGKRGHRIAEC 195
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BLAST of mRNA_Ecto-sp13_S_contig13024.2484.1 vs. uniprot
Match: A0A6H5JXF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 6.230e-44
Identity = 94/158 (59.49%), Postives = 99/158 (62.66%), Query Frame = 1 
Query:    4 LFHRFERYQVDVKVDLNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQECEVAKENLSSAAKLTRGDLMR--GESRN-----RARRKGNXXXXXXXXXSGGGVA----------------------------EKRARVRCFRCGKMGHRIAEC 372
            +FHRFERYQVDVKVD NVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQE EVAK NLSSA +LTRG+LMR  G   N     R   K +         +  G                              EKRARVRCFRCGKMGHRIAEC
Sbjct:   99 VFHRFERYQVDVKVDPNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQEYEVAKVNLSSAERLTRGNLMRVTGTRYNTLCSQREAEKSHTRAEEQAFVTADGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKRARVRCFRCGKMGHRIAEC 256
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BLAST of mRNA_Ecto-sp13_S_contig13024.2484.1 vs. uniprot
Match: A0A6H5KFR9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.410e-13
Identity = 41/74 (55.41%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:  151 ALPQECEVAKENLSSAAKLTRGDLMRGESRNRARRKGNXXXXXXXXXSGGGVAEKRARVRCFRCGKMGHRIAEC 372
            A  QE E +    +  A +      +GES NRA RKGN         SGGG AEKRARVRCFRCGKMGHRIAEC
Sbjct:   97 ASQQEVEKSHTRAAEQAFIPADGAGKGESPNRALRKGNSDGKGNGDESGGGGAEKRARVRCFRCGKMGHRIAEC 170
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BLAST of mRNA_Ecto-sp13_S_contig13024.2484.1 vs. uniprot
Match: A0A6H5J624_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J624_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.370e-6
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    1 QLFHRFERYQVDVKVDLNVALRELENIRDMIQECGGAALDDRFVFTRFVNALPQ-ECEVAKENLSSAAKLTRGDLM 225
            QLF  F++YQ   K +   +L +L  +  M+Q+ GGA ++D+FVF R +++LP  E EV K+ LS    LTR  L+
Sbjct:  129 QLFREFQQYQTPRKENPVASLNKLMGMAIMMQQGGGATVNDQFVFARLIDSLPNPEYEVTKQTLSVVQPLTRDILV 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13024.2484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K9V8_9PHAE7.070e-4866.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JXF6_9PHAE6.230e-4459.49CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFR9_9PHAE2.410e-1355.41CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J624_9PHAE1.370e-640.79CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13024contigEcto-sp13_S_contig13024:3785..4261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size372
Hectar predicted targeting categoryother localisation
Exons2
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.981449-CDS-Ecto-sp13_S_contig13024:3784..40121681462697.981449-CDS-Ecto-sp13_S_contig13024:3784..4012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13024 3785..4012 +
1681462697.991349-CDS-Ecto-sp13_S_contig13024:4117..42611681462697.991349-CDS-Ecto-sp13_S_contig13024:4117..4261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13024 4118..4261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13024.2484.1prot_Ecto-sp13_S_contig13024.2484.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13024 3785..4261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13024.2484.1

>prot_Ecto-sp13_S_contig13024.2484.1 ID=prot_Ecto-sp13_S_contig13024.2484.1|Name=mRNA_Ecto-sp13_S_contig13024.2484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
QLFHRFERYQVDVKVDLNVALRELENIRDMIQECGGAALDDRFVFTRFVN
ALPQECEVAKENLSSAAKLTRGDLMRGESRNRARRKGNSNGKGNGNESGG
GVAEKRARVRCFRCGKMGHRIAEC
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mRNA from alignment at Ecto-sp13_S_contig13024:3785..4261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13024.2484.1 ID=mRNA_Ecto-sp13_S_contig13024.2484.1|Name=mRNA_Ecto-sp13_S_contig13024.2484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13024:3785..4261+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTTTTTCACCGGTTTGAGCGGTACCAGGTCGACGTGAAGGTAGATCT
GAACGTGGCACTGCGTGAGTTGGAGAACATCCGCGACATGATCCAGGAAT
GCGGGGGCGCCGCCCTCGATGACCGCTTCGTGTTCACACGCTTCGTGAAT
GCCCTTCCCCAAGAGTGCGAGGTCGCAAAAGAGAACCTCTCATCCGCTGC
GAAGCTGACGAGGGGGGACCTCATGCGCGTGACGGGGACTCGCTACATCA
CGCTCTGCAGCCAGCGGGAGGCGGAGAAGAGCCACACAAGGGCAGCGGAA
CAGGCTTTCATCGCAGCCGACGGCGCCGGGAAGGGTGAAAGTCGCAACCG
CGCCCGCCGCAAGGGAAACAGCAACGGCAAAGGCAACGGCAACGAGAGCG
GTGGGGGCGTGGCGGAGAAACGGGCACGCGTCCGGTGCTTCCGATGTGGA
AAGATGGGGCATCGGATTGCGGAGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13024:3785..4261+

>mRNA_Ecto-sp13_S_contig13024.2484.1 ID=mRNA_Ecto-sp13_S_contig13024.2484.1|Name=mRNA_Ecto-sp13_S_contig13024.2484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13024:3785..4261+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTTTTTCACCGGTTTGAGCGGTACCAGGTCGACGTGAAGGTAGATCT
GAACGTGGCACTGCGTGAGTTGGAGAACATCCGCGACATGATCCAGGAAT
GCGGGGGCGCCGCCCTCGATGACCGCTTCGTGTTCACACGCTTCGTGAAT
GCCCTTCCCCAAGAGTGCGAGGTCGCAAAAGAGAACCTCTCATCCGCTGC
GAAGCTGACGAGGGGGGACCTCATGCGCGGTGAAAGTCGCAACCGCGCCC
GCCGCAAGGGAAACAGCAACGGCAAAGGCAACGGCAACGAGAGCGGTGGG
GGCGTGGCGGAGAAACGGGCACGCGTCCGGTGCTTCCGATGTGGAAAGAT
GGGGCATCGGATTGCGGAGTGC
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