mRNA_Ecto-sp13_S_contig13023.2482.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5JDD6_9PHAE (RGS domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD6_9PHAE) HSP 1 Score: 191 bits (486), Expect = 1.770e-59 Identity = 93/106 (87.74%), Postives = 97/106 (91.51%), Query Frame = 1
Query: 58 MGHLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
MGHLHETPLAA+MEFPPLR+AFGGY +K LC ESFQFLVDVSEFSSLVYRT+G DERGG DD DEFNVIVGEYITDNSNSEINIDS TKKKL GFCERSAYASL Q
Sbjct: 1 MGHLHETPLAAIMEFPPLRQAFGGYFRKPLCSESFQFLVDVSEFSSLVYRTSGCDERGGKDDLDEFNVIVGEYITDNSNSEINIDSVTKKKLTGFCERSAYASLDQ 106
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5K562_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K562_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.910e-38 Identity = 71/115 (61.74%), Postives = 85/115 (73.91%), Query Frame = 1
Query: 28 RLKGIGSSSAMGHLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLG 372
+ GIGS S HL ET LA +M F PL AFG +C+KALC ESFQFLVDVS+F S V+ + +GGND ++EF VIV EYI DNSN E+NIDSRTKK++ GF +RSAYASLG
Sbjct: 4 KTSGIGSKS---HLRETRLATIMGFLPLEHAFGEFCRKALCHESFQFLVDVSKFKSSVHAAH----QGGNDSYEEFIVIVDEYIEDNSNFEVNIDSRTKKEILGFGDRSAYASLG 111
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 3.430e-20 Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 1
Query: 64 HLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASL 369
+L++ L ++M F PLREAFG +C+++LCGESFQFLVDV EF L+ + F + IV +YI D S+SE+NI S TK+ + + + +AYA+L
Sbjct: 294 YLNDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAETSEKSFGGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAAL 395
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 1.700e-19 Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 1
Query: 64 HLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASL 369
+L + L ++M F PLREAFG +C+++LCGESFQFLVDV EF L+ + + F + +V +YI D S+SE+NI S TK+ + + +AYA+L
Sbjct: 294 YLDDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAEETEKSFGGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAAL 395
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.090e-16 Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 1
Query: 64 HLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTN-GGDERGGNDDFDE--------FNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
++ LA +M + PLREAFG +CQK+LC ESFQFL+D SEF ++ GD G ++ +E +V EYI D + SEINI S TK + + A+ASL Q
Sbjct: 188 YIDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTRRLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQ 300
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.910e-16 Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 52 SAMGHLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTN-GGDERGGNDDFDE----------FNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
S ++ LA +M + PLREAFG +CQK+LC ESFQFL+D SEF ++ GD G ++ +E +V EYI D + SEINI S TK+ + + A+ASL Q
Sbjct: 285 SRESYVESNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQ 403
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: D7G3E2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E2_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 3.740e-16 Identity = 48/119 (40.34%), Postives = 63/119 (52.94%), Query Frame = 1
Query: 52 SAMGHLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTN-GGDERGGNDDFDEFNV----------IVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
S ++ LA +M + PLREAFG +CQK+LCGESFQFL D SEF ++ GD G ++ E V +V EYI D + SEINI S K + + +ASL Q
Sbjct: 34 SRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCGESFQFLRDASEFRGVIVEGPVDGDANGSAEEEQEAPVHTSGLGDVAAMVNEYIKDGAPSEINIGSDIKHDIMELAKVETFASLDQ 152
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 1.320e-15 Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 82 LAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTN-GGDERGGNDDFDE----------FNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
LA +M + PLREAFG +CQK+LC ESFQFL+D SEF ++ GD G ++ +E +V EYI D + SEINI S TK + + A+ASL Q
Sbjct: 209 LAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVEGDANGSAEEENEAPAHTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHAIMELAKVEAFASLEQ 317
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5JD29_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD29_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.480e-12 Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query: 52 SAMGHLHETPLAAVMEFPPLREAFGGYCQKALCGE-----SFQFLVDVSEFSSLVYRTN-GGDERGGNDD----------FDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
S ++ LA +M + PLREAFG +CQK+LC E SF+FL+D S+F ++ GD G ++ + +V EYI D + SEINI S TK + + A+ASL Q
Sbjct: 82 SRESYVDSNRLAGLMNYLPLREAFGEFCQKSLCSEISRCVSFRFLLDASKFKGVIVEGPVDGDANGSAEEEIEAPTHTSGLGDVVAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQ 205
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 2.130e-11 Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
Query: 82 LAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASL 369
L ++ FPPL EAFG +C+KALC ES FL +F + ++ + F FN IV +YI D S+ E+NI+S+TK ++ S++ L
Sbjct: 353 LEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDASDADYDTI----FARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKEL 444 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13023.2482.1 >prot_Ecto-sp13_S_contig13023.2482.1 ID=prot_Ecto-sp13_S_contig13023.2482.1|Name=mRNA_Ecto-sp13_S_contig13023.2482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp CTVSPASGHRLKGIGSSSAMGHLHETPLAAVMEFPPLREAFGGYCQKALCback to top mRNA from alignment at Ecto-sp13_S_contig13023:2266..3325+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13023.2482.1 ID=mRNA_Ecto-sp13_S_contig13023.2482.1|Name=mRNA_Ecto-sp13_S_contig13023.2482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1060bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13023:2266..3325+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13023:2266..3325+ >mRNA_Ecto-sp13_S_contig13023.2482.1 ID=mRNA_Ecto-sp13_S_contig13023.2482.1|Name=mRNA_Ecto-sp13_S_contig13023.2482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13023:2266..3325+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |