mRNA_Ecto-sp13_S_contig13023.2482.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13023.2482.1
Unique NamemRNA_Ecto-sp13_S_contig13023.2482.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5JDD6_9PHAE (RGS domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD6_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.770e-59
Identity = 93/106 (87.74%), Postives = 97/106 (91.51%), Query Frame = 1
Query:   58 MGHLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
            MGHLHETPLAA+MEFPPLR+AFGGY +K LC ESFQFLVDVSEFSSLVYRT+G DERGG DD DEFNVIVGEYITDNSNSEINIDS TKKKL GFCERSAYASL Q
Sbjct:    1 MGHLHETPLAAIMEFPPLRQAFGGYFRKPLCSESFQFLVDVSEFSSLVYRTSGCDERGGKDDLDEFNVIVGEYITDNSNSEINIDSVTKKKLTGFCERSAYASLDQ 106          
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5K562_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K562_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.910e-38
Identity = 71/115 (61.74%), Postives = 85/115 (73.91%), Query Frame = 1
Query:   28 RLKGIGSSSAMGHLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLG 372
            +  GIGS S   HL ET LA +M F PL  AFG +C+KALC ESFQFLVDVS+F S V+  +    +GGND ++EF VIV EYI DNSN E+NIDSRTKK++ GF +RSAYASLG
Sbjct:    4 KTSGIGSKS---HLRETRLATIMGFLPLEHAFGEFCRKALCHESFQFLVDVSKFKSSVHAAH----QGGNDSYEEFIVIVDEYIEDNSNFEVNIDSRTKKEILGFGDRSAYASLG 111          
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.430e-20
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   64 HLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASL 369
            +L++  L ++M F PLREAFG +C+++LCGESFQFLVDV EF  L+  +           F  +  IV +YI D S+SE+NI S TK+ +  + + +AYA+L
Sbjct:  294 YLNDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAETSEKSFGGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAAL 395          
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.700e-19
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 1
Query:   64 HLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASL 369
            +L +  L ++M F PLREAFG +C+++LCGESFQFLVDV EF  L+  +   +       F  +  +V +YI D S+SE+NI S TK+ +    + +AYA+L
Sbjct:  294 YLDDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFKDLIADSAAEETEKSFGGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAAL 395          
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.090e-16
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   64 HLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTN-GGDERGGNDDFDE--------FNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
            ++    LA +M + PLREAFG +CQK+LC ESFQFL+D SEF  ++      GD  G  ++ +E           +V EYI D + SEINI S TK  +    +  A+ASL Q
Sbjct:  188 YIDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTRRLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQ 300          
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.910e-16
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   52 SAMGHLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTN-GGDERGGNDDFDE----------FNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
            S   ++    LA +M + PLREAFG +CQK+LC ESFQFL+D SEF  ++      GD  G  ++ +E             +V EYI D + SEINI S TK+ +    +  A+ASL Q
Sbjct:  285 SRESYVESNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQ 403          
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: D7G3E2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E2_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.740e-16
Identity = 48/119 (40.34%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   52 SAMGHLHETPLAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTN-GGDERGGNDDFDEFNV----------IVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
            S   ++    LA +M + PLREAFG +CQK+LCGESFQFL D SEF  ++      GD  G  ++  E  V          +V EYI D + SEINI S  K  +    +   +ASL Q
Sbjct:   34 SRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCGESFQFLRDASEFRGVIVEGPVDGDANGSAEEEQEAPVHTSGLGDVAAMVNEYIKDGAPSEINIGSDIKHDIMELAKVETFASLDQ 152          
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.320e-15
Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   82 LAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTN-GGDERGGNDDFDE----------FNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
            LA +M + PLREAFG +CQK+LC ESFQFL+D SEF  ++      GD  G  ++ +E             +V EYI D + SEINI S TK  +    +  A+ASL Q
Sbjct:  209 LAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVEGDANGSAEEENEAPAHTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHAIMELAKVEAFASLEQ 317          
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5JD29_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD29_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.480e-12
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query:   52 SAMGHLHETPLAAVMEFPPLREAFGGYCQKALCGE-----SFQFLVDVSEFSSLVYRTN-GGDERGGNDD----------FDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASLGQ 375
            S   ++    LA +M + PLREAFG +CQK+LC E     SF+FL+D S+F  ++      GD  G  ++            +   +V EYI D + SEINI S TK  +    +  A+ASL Q
Sbjct:   82 SRESYVDSNRLAGLMNYLPLREAFGEFCQKSLCSEISRCVSFRFLLDASKFKGVIVEGPVDGDANGSAEEEIEAPTHTSGLGDVVAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQ 205          
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.130e-11
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   82 LAAVMEFPPLREAFGGYCQKALCGESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSEINIDSRTKKKLKGFCERSAYASL 369
            L  ++ FPPL EAFG +C+KALC ES  FL    +F   +  ++   +      F  FN IV +YI D S+ E+NI+S+TK ++      S++  L
Sbjct:  353 LEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDASDADYDTI----FARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKEL 444          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13023.2482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JDD6_9PHAE1.770e-5987.74RGS domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A6H5K562_9PHAE1.910e-3861.74RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KX00_9PHAE3.430e-2044.12RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTR6_ECTSI1.700e-1943.14Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
A0A6H5J8W8_9PHAE1.090e-1641.59RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIZ3_9PHAE1.910e-1640.34RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3E2_ECTSI3.740e-1640.34RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P6_ECTSI1.320e-1543.12RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JD29_9PHAE1.480e-1236.29RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K976_9PHAE2.130e-1137.50RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13023contigEcto-sp13_S_contig13023:2266..3325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score93.6
Seed ortholog evalue7.1e-17
Seed eggNOG ortholog2880.D8LTR6
Model size378
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003060.2
Cds size375
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.9403133-CDS-Ecto-sp13_S_contig13023:2265..24211681462697.9403133-CDS-Ecto-sp13_S_contig13023:2265..2421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13023 2266..2421 +
1681462697.9520988-CDS-Ecto-sp13_S_contig13023:3105..33241681462697.9520988-CDS-Ecto-sp13_S_contig13023:3105..3324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13023 3106..3324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13023.2482.1prot_Ecto-sp13_S_contig13023.2482.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13023 2266..3324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13023.2482.1

>prot_Ecto-sp13_S_contig13023.2482.1 ID=prot_Ecto-sp13_S_contig13023.2482.1|Name=mRNA_Ecto-sp13_S_contig13023.2482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
CTVSPASGHRLKGIGSSSAMGHLHETPLAAVMEFPPLREAFGGYCQKALC
GESFQFLVDVSEFSSLVYRTNGGDERGGNDDFDEFNVIVGEYITDNSNSE
INIDSRTKKKLKGFCERSAYASLGQ
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mRNA from alignment at Ecto-sp13_S_contig13023:2266..3325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13023.2482.1 ID=mRNA_Ecto-sp13_S_contig13023.2482.1|Name=mRNA_Ecto-sp13_S_contig13023.2482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1060bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13023:2266..3325+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACCGTTTCCCCGGCGTCGGGGCACAGGCTCAAAGGGATAGGGAGCTC CTCGGCAATGGGACACCTCCACGAAACCCCGCTTGCCGCCGTCATGGAGT TTCCTCCCTTACGGGAGGCTTTCGGGGGCTACTGCCAGAAGGCACTGTGT GGCGAGGTGAGTTGATCGACGGCCAATTTAAAAGGAGTGGCCAACCCATG TCGTGCGGGTCATCTGCACAGAGAGGACAAACGGCAAGGATATTTCAAGC GGTAACCTGACGCTGCCGACACATTGCTACGTTGTCCGTGCATGGTTCCT AAGCTCCCACGGTACTGAAATATCTCTCTCGCGCGCGTAAACGTCAATAT TGAGAGATCCTCGGTGCCAACTTTTACAGAGGAAGACACGGAGTCCACCG AGAATTGGCGCGTTGGAAGGAGGATTGATTTGCCGTCCTCGGAACGAACT TCGTATGCGTTCGCTTGCCCACCGGGGTCCGGTTAAACGACGGATCCCTT GCTTCAAGGAAAGACGGAGAGTTGATTTTGAAGTACCTCCGCTGCCTCTC TTTGTGTTTCGGCCATCGAGGGAGTTATGGGGTGTACCAGATGCGCGAAT TACCGTCCATGGCAGCCAGCCTTCGCTCCCATCTACTCTAGCACGACAGA ACCTCGACAAAAAGCGGGGAGAACAGTTGTGGCACGTGACGACTCCCGAA CGATGTGCGCATGTTCTACAAATGTTGTACGTATCCCCGCGAAAACACGC GGCTCTCATACTTGCAGCTCTCACAGTTTTCCGGTGTCATCCTCACGTTG CCTTACGCACTGTTGTGTCGGACGTCCCTTCTTATAATAGTCGTTCCAGT TCTTGGTTGACGTGTCGGAATTCTCGAGCTTGGTCTATAGAACTAATGGT GGCGACGAGCGGGGCGGCAACGACGACTTCGACGAGTTCAACGTAATCGT CGGCGAATACATCACGGACAACTCCAATTCCGAGATTAACATCGACAGCC GTACCAAGAAAAAGCTCAAAGGGTTCTGCGAACGCTCAGCGTACGCGTCG CTTGGCCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13023:2266..3325+

>mRNA_Ecto-sp13_S_contig13023.2482.1 ID=mRNA_Ecto-sp13_S_contig13023.2482.1|Name=mRNA_Ecto-sp13_S_contig13023.2482.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13023:2266..3325+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACCGTTTCCCCGGCGTCGGGGCACAGGCTCAAAGGGATAGGGAGCTC
CTCGGCAATGGGACACCTCCACGAAACCCCGCTTGCCGCCGTCATGGAGT
TTCCTCCCTTACGGGAGGCTTTCGGGGGCTACTGCCAGAAGGCACTGTGT
GGCGAGTCGTTCCAGTTCTTGGTTGACGTGTCGGAATTCTCGAGCTTGGT
CTATAGAACTAATGGTGGCGACGAGCGGGGCGGCAACGACGACTTCGACG
AGTTCAACGTAATCGTCGGCGAATACATCACGGACAACTCCAATTCCGAG
ATTAACATCGACAGCCGTACCAAGAAAAAGCTCAAAGGGTTCTGCGAACG
CTCAGCGTACGCGTCGCTTGGCCAG
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