mRNA_Ecto-sp13_S_contig1302.2481.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1302.2481.1
Unique NamemRNA_Ecto-sp13_S_contig1302.2481.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1302.2481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1302contigEcto-sp13_S_contig1302:5368..5789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size422
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.8897119-UTR-Ecto-sp13_S_contig1302:5367..54161681462697.8897119-UTR-Ecto-sp13_S_contig1302:5367..5416Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1302 5368..5416 +
1681462697.9101-UTR-Ecto-sp13_S_contig1302:5719..57891681462697.9101-UTR-Ecto-sp13_S_contig1302:5719..5789Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1302 5720..5789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.9004142-CDS-Ecto-sp13_S_contig1302:5416..57191681462697.9004142-CDS-Ecto-sp13_S_contig1302:5416..5719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1302 5417..5719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1302.2481.1prot_Ecto-sp13_S_contig1302.2481.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1302 5417..5719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1302.2481.1

>prot_Ecto-sp13_S_contig1302.2481.1 ID=prot_Ecto-sp13_S_contig1302.2481.1|Name=mRNA_Ecto-sp13_S_contig1302.2481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MTLRAYSCRGLPAWPTGGGTCCVERSTLCLFLHSCPYVICDGFIDLTSKR
NLGPNGTNDSFFYAGVLACHGVAALYPFTLGVGKSICRCVFSVSIDRAHR
*
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mRNA from alignment at Ecto-sp13_S_contig1302:5368..5789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1302.2481.1 ID=mRNA_Ecto-sp13_S_contig1302.2481.1|Name=mRNA_Ecto-sp13_S_contig1302.2481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=422bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1302:5368..5789+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGCAGCCTGCCCTACCGGCCGCAGCGTGACCACCCATCAACCCCTCTA
TGACTCTACGGGCTTATTCCTGTCGCGGGCTGCCCGCTTGGCCTACAGGT
GGAGGTACTTGTTGCGTCGAGAGAAGCACGCTATGTCTCTTTTTGCACTC
TTGTCCCTACGTAATCTGCGATGGATTCATAGATTTGACGTCGAAACGGA
ACCTAGGCCCGAATGGGACGAACGACTCGTTCTTCTATGCTGGTGTGTTG
GCATGCCATGGAGTTGCCGCCCTGTATCCCTTCACGCTAGGTGTTGGCAA
GTCCATATGTAGGTGTGTCTTCAGTGTTAGCATCGACCGAGCTCACCGGT
GACCAATGAACAGACGTCAGTGCCAGCGGAAATAATCAAGGGGTGTGGCA
GGGTACCGAAATTCGAAAACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1302:5368..5789+

>mRNA_Ecto-sp13_S_contig1302.2481.1 ID=mRNA_Ecto-sp13_S_contig1302.2481.1|Name=mRNA_Ecto-sp13_S_contig1302.2481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1302:5368..5789+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTCTACGGGCTTATTCCTGTCGCGGGCTGCCCGCTTGGCCTACAGG
TGGAGGTACTTGTTGCGTCGAGAGAAGCACGCTATGTCTCTTTTTGCACT
CTTGTCCCTACGTAATCTGCGATGGATTCATAGATTTGACGTCGAAACGG
AACCTAGGCCCGAATGGGACGAACGACTCGTTCTTCTATGCTGGTGTGTT
GGCATGCCATGGAGTTGCCGCCCTGTATCCCTTCACGCTAGGTGTTGGCA
AGTCCATATGTAGGTGTGTCTTCAGTGTTAGCATCGACCGAGCTCACCGG
TGA
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