mRNA_Ecto-sp13_S_contig13018.2479.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13018.2479.1 vs. uniprot
Match: A0A6H5KD78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD78_9PHAE) HSP 1 Score: 919 bits (2375), Expect = 0.000e+0 Identity = 621/828 (75.00%), Postives = 634/828 (76.57%), Query Frame = 1
Query: 4 IFYEAAVEAAKKNGVSPATAKLLAAEAVEKALEDTNGQPLTLVQGKEAAMAAGRVAISLLKARGGRKQQQSNEPPVAEPRPVPQPPQPHAGAV---------------------DTVELTQRRGRRQLLSVAAASTPIAADGKPAGGDSGIRQASTAAGQDQQGGDLVNKTGSSDAAGSLSGGGGDAAGNLSXAXXXXXXXXXXXXAPRRRALLGPANDIERIGATTKGGSVAYKRKTPSKNSGXXXXXXXAVDDGKGQADSEEGKAAAGGEGAKGEEKDSGIIAGGDDAKWGARIDPEDPIPPPRCPSRLVELLEEALRAEAKRPAA-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPGHDSNWSPAVAVALLQDGAAAAEDRARSRAERGDGKGNGLGRELWEPSLGGGVLPSWLSGIAADWGREIAAKQQAAAVAA--PATPAAAAVAVLPRSIVAQQALGSGFQAIAAYRAHEVTGWKGGGDSGSVQNKVEGGPAGSGVGSITEPPVGEDEKKFLPVRFTGFTWDGSTVVAKETAPGCARTAKPPPTKLSTPRQKLFEPSEWGEDDDRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------MEGRLRQQPCLEVEAAFVPTRDIVVDVVVPVSAGLVPRLKTLLPQMEKLAKGSGCTPHHPSAPLAPQCNDADHYAPAFWPETLAIRGQSPSEWSFGLDYSDILEGSPAGGGLRGGTAESDGTKGKGHAAAATVAAAVKESSSFRVVVATEDPAVEAMLENYDV 2397
IFYEAAVEAAKKNGVS TAK+LAAEAVEKALED NGQPLTLVQGKE SNEPP EP PVP+ QP AGAV DTVELTQRR RQLLSVAAASTPIAADGKPAGGDS IRQASTA QDQ+ GDLVNKTGSS+AAGSLSGGGGD AG LSX XXXXXXXXX APRRRALLG ANDIERIGATTKGGSVAYKRKTPSK SG XXXX AVDDGKGQADS + G + GGDDAK RI+PEDPIPPPRCPSRLVELLEEALR EA+RPAA S XXXXXXX XXXXXXXXX KPGHDSNWSPAVAVALLQDGAAAAEDRARSRAERGDGKGNG RELWEPSLGGGVLPSWLSGIAADWGREIAAKQQAAA A VAVLPRS+VAQQALGSGFQAIAAYRAHEVTGWKGGGDSGSVQNK EGG AGSGVGS TEPPVGEDEK LPVRFTGFTWDGSTVVAKETAPGCARTAKPPPTKLSTP QKLFEPSEWGED DRSL XXXXXXXXXXXXXXXXXXXXXXXXXXXXX MEGRLRQQPCL+VEAAFVPTR+IVVD+VVPVSAGLVPRLKTLLPQMEKLAKGSGCTPHHPSAPLAPQCNDAD YAPAFWPETLAIRGQSPSEWSFGLDYS+ILEGSPAGGGLRGGTAESDGTKGKGHAAA AAVKESSSFRVVVATEDPAVEAMLENYDV
Sbjct: 285 IFYEAAVEAAKKNGVSLGTAKILAAEAVEKALEDANGQPLTLVQGKE-----------------------SNEPP--EPLPVPKLAQPRAGAVEQKTPPGPAPKAKVAWVGREVDTVELTQRR--RQLLSVAAASTPIAADGKPAGGDSAIRQASTA--QDQRQGDLVNKTGSSNAAGSLSGGGGDVAGTLSXXEDXXXXXXXXXGAPRRRALLGSANDIERIGATTKGGSVAYKRKTPSKKSGPGXXXXAAVDDGKGQADSGKXXXXXXXXXXXXXXXXXGTVEGGDDAKRRGRINPEDPIPPPRCPSRLVELLEEALRVEARRPAAPSRRIPPAGAGGPAPAAREGTPVAVASTAXXXXXXXGYASDGGSKAGNXXXXXXXXXWRRLRLWQSTAPSEEEEKPGHDSNWSPAVAVALLQDGAAAAEDRARSRAERGDGKGNG--RELWEPSLGGGVLPSWLSGIAADWGREIAAKQQAAAAGAVXXXXXXXXXVAVLPRSVVAQQALGSGFQAIAAYRAHEVTGWKGGGDSGSVQNKAEGGSAGSGVGSTTEPPVGEDEKTLLPVRFTGFTWDGSTVVAKETAPGCARTAKPPPTKLSTPGQKLFEPSEWGEDGDRSLPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARRGMAESGDGGGMEGRLRQQPCLKVEAAFVPTREIVVDIVVPVSAGLVPRLKTLLPQMEKLAKGSGCTPHHPSAPLAPQCNDADRYAPAFWPETLAIRGQSPSEWSFGLDYSEILEGSPAGGGLRGGTAESDGTKGKGHAAAXXXVAAVKESSSFRVVVATEDPAVEAMLENYDV 1081
BLAST of mRNA_Ecto-sp13_S_contig13018.2479.1 vs. uniprot
Match: D7G308_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G308_ECTSI) HSP 1 Score: 721 bits (1861), Expect = 4.490e-244 Identity = 502/704 (71.31%), Postives = 519/704 (73.72%), Query Frame = 1
Query: 1 QIFYEAAVEAAKKNGVSPATAKLLAAEAVEKALEDTNGQPLTLVQGKEAAMAAGRVAISLLKARGGRKQQQSNEPPV---------------AEPRPVPQPPQPHAGA------VDTVELTQRRGRRQLLSVAAA---STPIAADGKPAGGDSGIRQASTAAGQDQQGGDLVNKTGSSDAAGSL-SGGGGDAAGNLSXAXXXXXXXXXXXXAPRRRALLGPANDIERIGATTKGGSVAYKRKTPSKNSGXXXXXXXAVDDGKGQADSEEGKAAAGGEGAKGEEKDSGIIAGGDDAKWGARIDPEDPIPPPRCPSRLVELLEEALRAEAKRPAA--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPGHDSNWSPAVAVALLQDGAAAAEDRARSRAERGDGKGNGLGRELWEPSLGGGVLPSWLSGIAADWGREIAAKQQAAAVAAPATPAAAA----------VAVLPRSIVAQQALGSGFQAIAAYRAHEVTGWKGGGDSGSVQNKVEGGPAGSGVGSITEPPVGEDEKKFLPVRFTGFTWDGSTVVAKETAPGCARTAKPPPTKLSTPRQKLFEPSEWGEDDDRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEGRLRQQPCLEVEAAFVPTRDIVVDVVVPV 2001
++FYEAAVEAAKKNGVSP TAK+LAAEAVEKALE TNGQPLTLVQGKEAAMAAGRVAISLLKARGGR +QQ NEPPV A + P P P A V+ VELTQRRGR STPIAADGKPAGG SGIRQASTAAGQDQQ GDLV KTGSS+AAGSL SG GDAAGNLSX XXXXXXXXXXX APRRRALLG ANDIERIGATTKGGSVAYKRKTPSK SG XXX AVDDGKG ADSE+GKAAA G EEK+ G + GGDDAK G RI+PEDP PPPRCPSRLVELLEEALR EAKRPA+ XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX K GHDSNWSPAVAVALLQDGAAAAEDRARSRAERGDGKGNGLGRELWEPSLGGGVLPSWLSGIAADWGREIAAKQQ AA VA+LPRS+VAQQALGSGFQAIAAYRAHEVTGWKGGG SGSVQNK EGG AGSGVGS TEPPVG DEK LPVRFTGFTWDGSTVVAKETAPGCARTAKPPPTKLSTPRQ+LFEPSEWGEDDDRSL MEGRLRQQPCL+VEAAFVPTRDIVVD+VVPV
Sbjct: 306 KMFYEAAVEAAKKNGVSPGTAKILAAEAVEKALEGTNGQPLTLVQGKEAAMAAGRVAISLLKARGGRNKQQGNEPPVPXXXXXXXXXXXHTGAVEQKAPAGPAPKAEVAGVGREVEIVELTQRRGRXXXXXXXXXXXXSTPIAADGKPAGGASGIRQASTAAGQDQQRGDLVAKTGSSNAAGSLLSGXXGDAAGNLSXXXXXXXXXXXXXGAPRRRALLGSANDIERIGATTKGGSVAYKRKTPSKKSGPGXXXAAAVDDGKGLADSEKGKAAAEGXXXXXEEKEKGTVEGGDDAKRGGRINPEDPTPPPRCPSRLVELLEEALRVEAKRPASLSRRIPPAAAGGPAPAAKEGAPVAVXXXXXXXXXXSGYAAVGGSTAGNXXXXXXXXXXXXXXXXXXXXXXXXXXEKSGHDSNWSPAVAVALLQDGAAAAEDRARSRAERGDGKGNGLGRELWEPSLGGGVLPSWLSGIAADWGREIAAKQQTAAAXXXXXXXXXXXXXXXXXXXXVAMLPRSVVAQQALGSGFQAIAAYRAHEVTGWKGGGVSGSVQNKAEGGSAGSGVGSTTEPPVGGDEKPLLPVRFTGFTWDGSTVVAKETAPGCARTAKPPPTKLSTPRQRLFEPSEWGEDDDRSLPPSSEGGGRGRGGVAGSLDGGDAATQARRGMAESGDVGGGMEGRLRQQPCLKVEAAFVPTRDIVVDIVVPV 1009 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13018.2479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13018.2479.1 >prot_Ecto-sp13_S_contig13018.2479.1 ID=prot_Ecto-sp13_S_contig13018.2479.1|Name=mRNA_Ecto-sp13_S_contig13018.2479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=799bp QIFYEAAVEAAKKNGVSPATAKLLAAEAVEKALEDTNGQPLTLVQGKEAAback to top mRNA from alignment at Ecto-sp13_S_contig13018:857..4478- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13018.2479.1 ID=mRNA_Ecto-sp13_S_contig13018.2479.1|Name=mRNA_Ecto-sp13_S_contig13018.2479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3622bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13018:857..4478- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13018:857..4478- >mRNA_Ecto-sp13_S_contig13018.2479.1 ID=mRNA_Ecto-sp13_S_contig13018.2479.1|Name=mRNA_Ecto-sp13_S_contig13018.2479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2397bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13018:857..4478- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |