mRNA_Ecto-sp13_S_contig13014.2477.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13014.2477.1
Unique NamemRNA_Ecto-sp13_S_contig13014.2477.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13014.2477.1 vs. uniprot
Match: D7FKD2_ECTSI (Coiled-coil domain 6-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD2_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.340e-17
Identity = 144/176 (81.82%), Postives = 144/176 (81.82%), Query Frame = 1 
Query:   25 SQQVEAEEECLINRVSSATDTDTGSR--MMKRLMELKKEKEDLALEVEREEELLTNTLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVEEQLAQEREEVKAVTAEKGELETLVEQGAKALLSKLQEATERAHDR 546
            SQQVEAEEECLINR              MMKRLMELKKEKEDLALE             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAVEEQLAQER EVKAVTAEKGELE L EQGAKALLSKLQEA ERAHDR
Sbjct:   79 SQQVEAEEECLINRTXXXXXXXXXXXXXMMKRLMELKKEKEDLALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAVEEQLAQERGEVKAVTAEKGELEILFEQGAKALLSKLQEAVERAHDR 254
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13014.2477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKD2_ECTSI1.340e-1781.82Coiled-coil domain 6-like protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13014contigEcto-sp13_S_contig13014:536..4800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.4
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog2880.D7FKD2
Preferred nameCCDC6
Model size546
KEGG koko:K09288
KEGG Pathwayko05200,ko05216,map05200,map05216
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000793,GO:0000922,GO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007163,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0030010,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0051293,GO:0051294,GO:0051295,GO:0051296,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0071840,GO:1903046
Exons6
EggNOG free text desc.SH3 domain binding
EggNOG OGsKOG2129@1,KOG2129@2759
Ec32 ortholog descriptionProtein of unknown function DUF2046
Ec32 orthologEc-05_005760.1
Cds size546
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13014.2477.1prot_Ecto-sp13_S_contig13014.2477.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13014 536..4800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.6559467-CDS-Ecto-sp13_S_contig13014:535..6371681462697.6559467-CDS-Ecto-sp13_S_contig13014:535..637Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13014 536..637 +
1681462697.6703355-CDS-Ecto-sp13_S_contig13014:1430..15381681462697.6703355-CDS-Ecto-sp13_S_contig13014:1430..1538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13014 1431..1538 +
1681462697.6841702-CDS-Ecto-sp13_S_contig13014:2224..23111681462697.6841702-CDS-Ecto-sp13_S_contig13014:2224..2311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13014 2225..2311 +
1681462697.6932588-CDS-Ecto-sp13_S_contig13014:2729..28211681462697.6932588-CDS-Ecto-sp13_S_contig13014:2729..2821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13014 2730..2821 +
1681462697.7039797-CDS-Ecto-sp13_S_contig13014:3560..36351681462697.7039797-CDS-Ecto-sp13_S_contig13014:3560..3635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13014 3561..3635 +
1681462697.7156491-CDS-Ecto-sp13_S_contig13014:4718..48001681462697.7156491-CDS-Ecto-sp13_S_contig13014:4718..4800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13014 4719..4800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13014.2477.1

>prot_Ecto-sp13_S_contig13014.2477.1 ID=prot_Ecto-sp13_S_contig13014.2477.1|Name=mRNA_Ecto-sp13_S_contig13014.2477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
MGRLCGEQSQQVEAEEECLINRVSSATDTDTGSRMMKRLMELKKEKEDLA
LEVEREEELLTNTLQKKLNQLRQEKVDLENQLEREQEYVVNKLRKQLAQV
TADKERMAMEVEREEEFLTNKLVKQLDLLKEEKAAVEEQLAQEREEVKAV
TAEKGELETLVEQGAKALLSKLQEATERAHDR
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mRNA from alignment at Ecto-sp13_S_contig13014:536..4800+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13014.2477.1 ID=mRNA_Ecto-sp13_S_contig13014.2477.1|Name=mRNA_Ecto-sp13_S_contig13014.2477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13014:536..4800+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCGCTTGTGCGGTGAGCAGAGCCAGCAAGTGGAGGCGGAGGAAGA
ATGCCTCATCAACCGGGTGAGTAGTGCGACAGATACAGATACCGGATCTC
GTGTGGCCCAACCCCCGCATGGTTCTGCCTTTTCTTGCAGGAAGGGGTGA
CGGTGTGTGGTGGCTTGGCGGGCGGGGGGGGGGCAGTAAACCCACCTCAT
ATTTCCGTCGGGAAAACGAGGCACACTACCTGTACCTGGAGATTCAATGT
TTTTTGTTATCGAATTTACACAACAGCAGTGACACCGGAGAGGGGGCGTA
CAAGGCAGATTTATCATCTAGGAGAACATATCCGTTCAACGGTACTATTG
TCAAGGAGCATGAAACGGGAGGGATTTCTCGAGAACAACCAACGGGCCGT
AAAACGCGACACACGGGACGACAGCACCGAGCGGTTGAAAGAAGGGAACA
GGAACGATGTGGAGGGAGGGGCATATGGACGAAACGATGGCATCGTAATC
ATCTCTGATGGCTTGTTCCAACATGCACGCACTACGTATATTGTTTCTGT
TTAGGTCCTAAGCGTTTGAGCTGGTGGTCATTCTCAAACGATGAGATACC
TACATGCGACATGCTCAAACAACGAGATCCCTGCATGTGTGGGTGTAACT
CAAACTCCCATCCCCAAACCCTAAACCTAAAAAATTGGTGGCTCTTCGGC
AGGGTACCTACCCATGGTCTAACTGTGTCAACGCCGGCACTTGTCATGTG
TTTTTGTCGTTGCTCAAGGACTGCTGCCAATACGTATGCAGGCAAGCTAG
GTGGCTGCTCGAAGCGAGTTACGATCTCGTTTAGCGACGCCCGTGCTCGC
GGTTGGTAAACTTGTTTTCGTGCTTTTTTTTTGTTCTTTTTGAAGATGAT
GAAGCGGCTGATGGAGCTGAAGAAGGAGAAGGAAGACCTCGCACTTGAGG
TGGAGAGGGAAGAGGAGCTTCTCACGAACACCCTTCAGAAGAAACTCAAC
CAGGTGCGTGCGCGGGACGTGGGCTTGCTGAGATGATAAGGTCGGCATGA
ACCAGAGTGGCGGTACCTGCGGGGCACCCGCAGACGAGCAGGGGTGTGCG
GGTGGTGTCAGTATTGTCCACATTATGTTCGCAGTTGTTGTGTCTGGGCT
CGGAATGCACCGTTTTTGCTGCCTGCTTATTGAGGCGTGTTCCGTCGAGC
CCGTGCCTGCCGTTCGAGAACACTGCGATGATCTGCTTCCGTTGCTTCAC
CAAAAAGGTTGCCGGACGGCGTGCTAATGCCTTTTGGGATGATGTCAATC
AAAACCCTGTATACGTACGCGGGCAGTCGCGTGATATGTATGAAGGACGA
ACGTTTGCTGTAGCAAGTTTTACTGCGGACGTATCTAATTTCTTTCTCCA
GCGCGAAGCCCTGTTGGGAAAGCTTTTTTTCCTGCTTCCCCTAGTGCGAA
AAGGGCCTCGCTAAACTCGGATTAGTTGTGTAGTGTGTGTTTCTACACCG
CCCCCGGCCCTCACGGAATGGAACGTCCTGTTATGTGGACACATACAAGA
TGAGATGGTGTGGAAGCGGAAAATGCATACATACATTTTTGAAAACATTA
AAAAGCGTTTTCTGAGTTCCGAAGAAATGCTCGGTGCTGTTGAGATGGTT
ACGCTCGCTCTTCCCCTGCTGGTGACAACGAAATGACAGCTGCGTCAGGA
GAAGGTGGACCTCGAGAACCAACTGGAGCGAGAGCAGGAGTACGTCGTCA
ACAAGCTCCGCAAGCAGCTGGCCCAGGTACGCGATGCCACGCTATATTAG
TTTAGCACGACGCAAGCATGGCTAAATTTAGCACAAGTGTTTTGCCCATA
TATTGTGTTGCCTGTTCCCGTCCGTCTTGTAATGGGTTGCTCAGAATCAT
AGCAGGAGCGGCTGCTTCTTGGTGGTTTGGTTACTCTTTTTTTGTTGCGG
GTTTGGCTGCGGAGCGTAACACGCGTGGTTGTGCGAAAGTGTCTCGCGCT
TCTCCTGTTCGAGCGGTGGAAATAAGGTGGTCGCGGCCATGCGACGCCCG
GGCGCGCATGCAACGCCTGGGCGTGCGACGGAAGATCGTCGCCGCTTAGA
TGATGTCGTGGTGCCGCCGCCCGTGTGGCCCGCTTGGCTTTCGTCTACGT
TCGTGCCTAACCCTAACGGTAACGCTAACAATGGTATCCCTCAGGTGACT
GCGGACAAAGAGCGAATGGCGATGGAGGTGGAGAGGGAGGAGGAGTTCCT
CACGAACAAGCTCGTGAAGCAGCTCGATCTTCTCAAGTGAGTCAGTCCAC
TGCGTCGTCGTCCCTTGAACTTACAGGTAGGGTTGGGATGGTAAGCGTTA
GGGTTGGAGTTTAAATAGCTGGGACACAGGGGGCACAATTTTGTTGCCTA
GAGATGTGTTGTGGGTCCTTGGCATGCCTTGTCGTTATGCGTGAGTTGTC
CCGTCCTCGTTTGTTTGGATGGTGCTATTGGGGACGCTCTGGTAGACGCT
CGACCAAACAATGGACCTCAGTTGGTCCATGTCCTGGTCCCTGCAGACGA
CAGGAAAAGCCGACGCCTCAAGGCATGCCAGCGCTGGCTGACGGACGTGC
TCTTCTACAGCGCCGCGTCATTTTTCGTCCTTTGGCGTAGTAGTTTCGTG
TTGGCCTTGCGAGTGATGTAGTCTACGACGCGTGTCGGACGGCGAAGCTG
TTTCGGCAGCGGCAGTCACCACGTCTGGTTGTGAGGATTCGACCACTTTC
GCGGGAATTCGACCACTTTCATGGAAACCGGCGCCCTCCAGCTGGTTTCG
TCAGCCATGCCACGCTGCTGCCGAGAAGGATCGTGCACGCGGGTTTTATT
GGTGTCCTTTGCATGCTCTAGACTCAAACCTCGTGCGCACGTCTGTCCAG
GTGTTGCGAGAAGAACCGTGCATGCGGCTTTTACTGGTGTCCTTTGCATG
GCTGCAGACCCATACCTCGCGCCGCACTTTGACTCACAATTACCTCATGC
TACACTTGTCCTTTGCCCAACATAGGGAAGAGAAAGCGGCCGTGGAAGAA
CAGCTGGCGCAAGAGAGGGAAGAGGTGAAGGCGGTCACCGCGGAAAAGGG
GTGAGATGCTATACTGAAAGTACGGTGGGGGCCCCTATATAGTGCCGTGG
TGTGTCCCGAGATTTGCTGGCACTACTGCACTTGTTTCTGGTCCTCCTTT
TGTTGTTTTTGGTGGCCAAGGCAAGTACCGCAGGGGGAAAGGTGGACCAA
AACAAAGAAATGAACAACGCTCCTGTGTGACCTTCCTCTTGTGCACACCC
GGCTGATACGTCAGGTATATACGCCGAAAGGCCTCTAAACCGGCGCCAGA
ATAGATGGGACGAGCAGACAGACAGACAGACAGACAGACAGACAGACAGA
CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACA
CAAGCGATGCCGGTCTTTCGGCGGGGGGGGTGGTTGCCAAGGACAGTGGG
GGAGGGAGTGTTGTGCCATAATCCTTGCGGAAAACGGGCGAGAGGCGGCA
GCAAGAAACGACCGAGTGGGGCGAAACCGTCGCGTGGCTTTGAACGGGAA
CATGTGTCGAGAGTGAGACCGTGTGGCACCCCCCCAAGAGCATGCGGAGT
GATACGAAGATGTGGTTTACGAAAGAAGTACAGATTGATACGACTATAAA
TATGTGGTTTTTACGATGTGCAGGTCGATAAGACGATGTCGTTTTTACGG
TGAGACTGGTCAGGTTGTGTTTCCGCAGCTCCCCCTCCCACAAAAGAGTA
GAGCACTCTTTTGTACCACCAGGTCTGTTTTGAGCTGTGCATGATTCGCG
CTGAGCAACCTCGTCCCTGTCAAGTACCCGAAAACGTGAGCCACCTGTTG
TTTTGCTGCTACCCAACTTCGTTTCACGCTCGCTACCCAAGAAGTTCAAG
GGCAACAGCGACTTTCGGTTTCTTCTTTTTGATCCGCCGAGATTACCTCT
CGTTCACAGGCTCACCTCTCCTTCACAGGCAACGCCGTCGCAAAATGGCT
TGCGCACCTGAGGTGATTGCGCAGTTTTTTTCTCTGCAACGTCGATCACC
ACCACGATTCCCTTGTCGCATTTTCTCTCTTCCCTTGATTTTGCTGTCGC
TACCGCTGTTCGGTGCTGCTGACGGTCGCACAGGGAGCTGGAAACACTCG
TCGAGCAGGGGGCCAAGGCGCTGCTGTCGAAACTGCAGGAGGCTACGGAA
CGCGCACATGACAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13014:536..4800+

>mRNA_Ecto-sp13_S_contig13014.2477.1 ID=mRNA_Ecto-sp13_S_contig13014.2477.1|Name=mRNA_Ecto-sp13_S_contig13014.2477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13014:536..4800+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCGCTTGTGCGGTGAGCAGAGCCAGCAAGTGGAGGCGGAGGAAGA
ATGCCTCATCAACCGGGTGAGTAGTGCGACAGATACAGATACCGGATCTC
GTATGATGAAGCGGCTGATGGAGCTGAAGAAGGAGAAGGAAGACCTCGCA
CTTGAGGTGGAGAGGGAAGAGGAGCTTCTCACGAACACCCTTCAGAAGAA
ACTCAACCAGCTGCGTCAGGAGAAGGTGGACCTCGAGAACCAACTGGAGC
GAGAGCAGGAGTACGTCGTCAACAAGCTCCGCAAGCAGCTGGCCCAGGTG
ACTGCGGACAAAGAGCGAATGGCGATGGAGGTGGAGAGGGAGGAGGAGTT
CCTCACGAACAAGCTCGTGAAGCAGCTCGATCTTCTCAAGGAAGAGAAAG
CGGCCGTGGAAGAACAGCTGGCGCAAGAGAGGGAAGAGGTGAAGGCGGTC
ACCGCGGAAAAGGGGGAGCTGGAAACACTCGTCGAGCAGGGGGCCAAGGC
GCTGCTGTCGAAACTGCAGGAGGCTACGGAACGCGCACATGACAGG
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