mRNA_Ecto-sp13_S_contig13011.2475.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13011.2475.1
Unique NamemRNA_Ecto-sp13_S_contig13011.2475.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13011.2475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13011contigEcto-sp13_S_contig13011:1623..2095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size473
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.4744582-UTR-Ecto-sp13_S_contig13011:1622..16981681462697.4744582-UTR-Ecto-sp13_S_contig13011:1622..1698Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13011 1623..1698 +
1681462697.502514-UTR-Ecto-sp13_S_contig13011:2022..20951681462697.502514-UTR-Ecto-sp13_S_contig13011:2022..2095Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13011 2023..2095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462697.4898055-CDS-Ecto-sp13_S_contig13011:1698..20221681462697.4898055-CDS-Ecto-sp13_S_contig13011:1698..2022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13011 1699..2022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13011.2475.1prot_Ecto-sp13_S_contig13011.2475.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13011 1699..2022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13011.2475.1

>prot_Ecto-sp13_S_contig13011.2475.1 ID=prot_Ecto-sp13_S_contig13011.2475.1|Name=mRNA_Ecto-sp13_S_contig13011.2475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MYHHVSVFSYIIKRVWFLARESVPHAIYGTRNWPGSSVPSLVYAEQQQQQ
QQQLVDPDSSCSTKCCRTSGGLLRCFVFVAMQGGGRACKSFVFLVCVRQT
GRQHKKS*
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mRNA from alignment at Ecto-sp13_S_contig13011:1623..2095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13011.2475.1 ID=mRNA_Ecto-sp13_S_contig13011.2475.1|Name=mRNA_Ecto-sp13_S_contig13011.2475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13011:1623..2095+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGCTTGGGGGCGGTATCTACTGCTGCTGTGTGGCCGGGGGCTAAATCG
ACCATCGTCCGTTGGATTAAAAAAGCATGTATCATCACGTGAGTGTGTTT
TCTTACATTATTAAGAGGGTGTGGTTTCTAGCGCGCGAGTCGGTTCCTCA
TGCGATCTACGGCACGCGAAATTGGCCAGGTTCGTCCGTTCCTTCCCTTG
TATATGCCGAGCAGCAGCAGCAGCAGCAGCAGCAGTTGGTTGATCCAGAC
TCCTCTTGCTCAACAAAATGCTGCAGAACTAGTGGTGGTTTGCTTCGCTG
CTTTGTTTTTGTAGCCATGCAAGGTGGTGGGCGTGCGTGCAAGTCTTTCG
TGTTTTTGGTTTGCGTCAGACAGACAGGGAGGCAACACAAGAAGAGCTGA
TATTTGTTTATTGAGGAGAAATAAATACACGAACTGATATTTGTTTATTC
AAATCCCCGCTGCCTCCCCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13011:1623..2095+

>mRNA_Ecto-sp13_S_contig13011.2475.1 ID=mRNA_Ecto-sp13_S_contig13011.2475.1|Name=mRNA_Ecto-sp13_S_contig13011.2475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13011:1623..2095+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATCATCACGTGAGTGTGTTTTCTTACATTATTAAGAGGGTGTGGTT
TCTAGCGCGCGAGTCGGTTCCTCATGCGATCTACGGCACGCGAAATTGGC
CAGGTTCGTCCGTTCCTTCCCTTGTATATGCCGAGCAGCAGCAGCAGCAG
CAGCAGCAGTTGGTTGATCCAGACTCCTCTTGCTCAACAAAATGCTGCAG
AACTAGTGGTGGTTTGCTTCGCTGCTTTGTTTTTGTAGCCATGCAAGGTG
GTGGGCGTGCGTGCAAGTCTTTCGTGTTTTTGGTTTGCGTCAGACAGACA
GGGAGGCAACACAAGAAGAGCTGA
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