mRNA_Ecto-sp13_S_contig13004.2471.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13004.2471.1 vs. uniprot
Match: D7G875_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G875_ECTSI) HSP 1 Score: 354 bits (908), Expect = 3.230e-118 Identity = 175/195 (89.74%), Postives = 185/195 (94.87%), Query Frame = 3
Query: 432 MEEQRHGGFDSIVGAWVLNLPRSDTMERFLQVTRVSEQGTRAHVRAEARHGAFNLIRLEGDTITIHKRTCANNFTESFKLGEEKVKYDGIVRTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDVDMLESRHIMEGGLSHIQEIRLHNLTTGEHCVTNRVWTRVPMPDEHEATMGLLLLAEQPSSSSARILRQNT 1016
MEEQRHGG +SIVGAWVL+L RSDTMERFLQVTRVSEQGTRAHVRAEARHGAFN+I LEGDTITIH+RTCANNFTESFKL EEKVKYDGIVRTRISE+VSMPSS PTGYVRSA STA+SGGRDDV MLESRHIMEG LSH QEIRLHNLTTGEHCVTNRVWTRVPM DEH+AT+GLLLLAE+PSSSSARILR+NT
Sbjct: 1 MEEQRHGGLNSIVGAWVLDLSRSDTMERFLQVTRVSEQGTRAHVRAEARHGAFNVIHLEGDTITIHRRTCANNFTESFKLDEEKVKYDGIVRTRISELVSMPSSGPTGYVRSANSTAISGGRDDVHMLESRHIMEGSLSHTQEIRLHNLTTGEHCVTNRVWTRVPMTDEHQATIGLLLLAEEPSSSSARILRENT 195
BLAST of mRNA_Ecto-sp13_S_contig13004.2471.1 vs. uniprot
Match: A0A6H5JV86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV86_9PHAE) HSP 1 Score: 287 bits (734), Expect = 1.500e-92 Identity = 142/152 (93.42%), Postives = 147/152 (96.71%), Query Frame = 3
Query: 561 VRAEARHGAFNLIRLEGDTITIHKRTCANNFTESFKLGEEKVKYDGIVRTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDVDMLESRHIMEGGLSHIQEIRLHNLTTGEHCVTNRVWTRVPMPDEHEATMGLLLLAEQPSSSSARILRQNT 1016
VRAEARHGAFN+I LEGDTITIHKRTCANNFTESFKLGEEKVK+DGI+RTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDV MLESRHIMEGGLSH QEIRLHNLTTGEHCVTNRVWTRVPM DEH+A MGLLLLAE+PSSSSARILRQNT
Sbjct: 4 VRAEARHGAFNVIHLEGDTITIHKRTCANNFTESFKLGEEKVKHDGILRTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDVHMLESRHIMEGGLSHTQEIRLHNLTTGEHCVTNRVWTRVPMTDEHQAMMGLLLLAEEPSSSSARILRQNT 155
BLAST of mRNA_Ecto-sp13_S_contig13004.2471.1 vs. uniprot
Match: D7G874_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G874_ECTSI) HSP 1 Score: 227 bits (579), Expect = 1.710e-67 Identity = 119/196 (60.71%), Postives = 144/196 (73.47%), Query Frame = 3
Query: 384 RGAGDRVPAARDWLRLMEEQRH--GGFDSIVGAWVLNLPRSDTMERFLQVTRVSEQGTRAHVRAEARHGAFNLIRLEGDTITIHKRTCANNFTE-SFKLGEEKVKYDGIVRTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDVDMLESRHIMEGGLSHIQEIRLHNLTTGEHCVTNRVWTRVPMPDEHEATMGLL 962
R AG R W LME Q GG SIVGAWVL+L RSDTME FL++ + E+ R HV AE HG FN++ L DTITIHKRTC N +TE S+ L EEKVKY+ + RTR+SEV+S+P S PTG+VRSA + +GGRD+V MLE+RH++EGGL+H QEIRLHNLTTGE CVTNRVW RVPM +EH+A +G L
Sbjct: 89 REAGARPRTRSAWATLMEGQLRTPGGHHSIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNVVGLGEDTITIHKRTCTNCYTERSYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSAN-CSTAGGRDNVHMLETRHVVEGGLAHTQEIRLHNLTTGEDCVTNRVWMRVPMTEEHQAALGPL 283
BLAST of mRNA_Ecto-sp13_S_contig13004.2471.1 vs. uniprot
Match: D7G8E6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8E6_ECTSI) HSP 1 Score: 130 bits (327), Expect = 4.220e-32 Identity = 74/155 (47.74%), Postives = 95/155 (61.29%), Query Frame = 3
Query: 507 MERFLQVTRVSEQGTRAHVRAEARHG-AFNLIRLEGDTITIHKRTCANNFTESFKLGEEKVKYDGIVRTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDVDMLESRHIMEGGLSHIQEIRLHNLTTGEHCVTNRVWTRVPMPDEHEATMGLLLL 968
M+R+L+V+ + HV AE +HG A NLI L+ T+TIHKRT NN+TE+F LGEEKV R IS VS S GYV R+T+ + + ++LE R++ GGL HIQEI+ LTTGE C R W RV M EH AT+GLLL+
Sbjct: 1 MQRYLEVSGMPATHAYTHVLAERKHGGALNLIHLDETTLTIHKRTYRNNYTETFVLGEEKVTSVTPNRVSISTTVSNLGSSSRGYVCLIRNTSTPERQHNTEVLERRYVANGGLCHIQEIKARCLTTGEECGIVRTWRRVMMTHEHRATLGLLLV 155
BLAST of mRNA_Ecto-sp13_S_contig13004.2471.1 vs. uniprot
Match: D7FQR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR1_ECTSI) HSP 1 Score: 106 bits (265), Expect = 3.800e-23 Identity = 61/167 (36.53%), Postives = 101/167 (60.48%), Query Frame = 3
Query: 456 FDSIVGAWVLNLPRSDTMERFLQVTRVSEQGTRAHVRAEARHGAFNLIRLEGDTITIHKRTCANNFTESFKLGEEKVKYDGIVRTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDVDMLESRHIMEGGLSHIQEIRLHNLTTGEHCVTNRVWTRVPM-PDEHEATM 953
++SIVGAWVL + RS+TME +L+ V++ A ++AE H + N+ +EG + IHKRT N+FT+ ++L +EK+ DG + +VS+P+ P +T++ + + ++E+R +++ G H QE+ L NLTTG CVT R W RV + P + E+ +
Sbjct: 21 YNSIVGAWVLEVSRSETMEGYLRCMNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKIT-DGRSGPKHC-MVSLPN--PGCLDGLVLTTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPVDQESVL 183 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13004.2471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13004.2471.1 >prot_Ecto-sp13_S_contig13004.2471.1 ID=prot_Ecto-sp13_S_contig13004.2471.1|Name=mRNA_Ecto-sp13_S_contig13004.2471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp MPAPRNIPRRGAGDRVPAARDWLRLMEEQRHGGFDSIVGAWVLNLPRSDTback to top mRNA from alignment at Ecto-sp13_S_contig13004:2..4324- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13004.2471.1 ID=mRNA_Ecto-sp13_S_contig13004.2471.1|Name=mRNA_Ecto-sp13_S_contig13004.2471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4323bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13004:2..4324- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13004:2..4324- >mRNA_Ecto-sp13_S_contig13004.2471.1 ID=mRNA_Ecto-sp13_S_contig13004.2471.1|Name=mRNA_Ecto-sp13_S_contig13004.2471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13004:2..4324- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |