mRNA_Ecto-sp13_S_contig1300.2467.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1300.2467.1
Unique NamemRNA_Ecto-sp13_S_contig1300.2467.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Match: D7FZN9_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN9_ECTSI)

HSP 1 Score: 865 bits (2234), Expect = 5.760e-307
Identity = 546/682 (80.06%), Postives = 557/682 (81.67%), Query Frame = 3 
Query:  285 PRRPPAGVDAAGEWGATSKSNLRPIPADSSKGIGMGGGGIGARSTSALLDKLAHEQDRGQAVMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYEGASTTTTRRSRQEGTRRNRCRSDGAPAMPPVAAGEGEGAREARGRASGVLLPQGGAGKRDGPDEDTSPWGAAVIDREAEVAAXXXXXXXXNPPSPFEPLSLGEVYIRTAPASDLAPVGVGAGPWRRRWLVLRQTYMFELLEPPSPPVPTLVLTSRQAGAQXXXXXXXXPLSDAVAVDDTAAFXXXXXXXXXXXXXXXXXXXXXXXXXXAGRRKVRKLDQEQPQQ-RLPGEMGPPLXXXXXXXXXXXXEGNDDGGAQKYVAPVGFVCLSKASVEDGGIDWGPKTLLLRCQARPADISREEASXXXXXXXXXXXXXGGSASVRARRRVGTKICVELRVPSPEVGERWAALFRERAALEMASLFEPSPPDFEDNTKGGGSSDSGSGDHLSGGGDXXXXXXXXXX--AEGGVETDTGFSVLGTGRFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXX-----------------------GIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV 2252
            PR+PPAG DA GEWGATS+SNLRP+P DSSKG GMGGGGIGARSTSALLDKLAHEQDRGQAVMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYE A+TT      Q GTRRNRCRSDGAPAMPPVAAGEG  AREARGRASGV LPQG  GKRDGPDE+TSPWGAAV+DREAE A         NPPSPFEPLSLGEV IRTAPASDLAP GVGAGPWRRRWLVLRQTYMFELLEPPSPPVPTLVL S ++GA                 D+  A XXXXXXXXXXXXXXXXXX             VRKLDQEQPQQ RLPGEMGP  XXXXXXXX    EGNDDGGAQKYVAPVGF CLSKASVEDGGI+WGPKTLLLRCQARPADISREEAS             GG ASVRARRRVGTKICVELRVPSPEVGERWAALFRERAALEMASLFEPSPPDFEDNTKGGGS DSG          XXXXXXXXXX  AEGGVETDTGFSVLGTGRFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXX                       GIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGA SEREAAGLT NLL A+
Sbjct:    2 PRQPPAGGDAVGEWGATSRSNLRPMPTDSSKG-GMGGGGIGARSTSALLDKLAHEQDRGQAVMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYEAANTTXXXXX-QGGTRRNRCRSDGAPAMPPVAAGEG--AREARGRASGVPLPQGRDGKRDGPDEETSPWGAAVVDREAEAAEAAAA----NPPSPFEPLSLGEVSIRTAPASDLAPAGVGAGPWRRRWLVLRQTYMFELLEPPSPPVPTLVLASGRSGAG----------------DEVGAAXXXXXXXXXXXXXXXXXX-------------VRKLDQEQPQQQRLPGEMGPXXXXXXXXXXDEGREGNDDGGAQKYVAPVGFACLSKASVEDGGINWGPKTLLLRCQARPADISREEASAAAVIGGGDGDVVGGIASVRARRRVGTKICVELRVPSPEVGERWAALFRERAALEMASLFEPSPPDFEDNTKGGGSGDSGXXXXXXXXXXXXXXXXXXXXXXAEGGVETDTGFSVLGTGRFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAGGAEAVVACDGTGGGGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGALSEREAAGLTVNLLRAI 646
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BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Match: A0A6H5KPH2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH2_9PHAE)

HSP 1 Score: 837 bits (2163), Expect = 5.970e-288
Identity = 544/696 (78.16%), Postives = 560/696 (80.46%), Query Frame = 3 
Query:  267 RGSETTPRRPPAGVDAAGEWGATSKSNLRPIPADSSKGIGMGGGGIGARSTSALLDKLAHEQDRGQAVMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYEGASTTTTRRSRQEGTRRNRCRSDGAPAMPPVAAGEGEGAREARGRASGVLLPQGGAGKRDGPDEDTSPWGAAVIDREAEVAAXXXXXXXXNPPSPFEPLSLGEVYIRTAPASDLAPVGVGAGPWRRRWLVLRQTYMFELLEPPSPPVPTLVLTSRQAGAQXXXXXXXX-PLSDAVAVDDTAAFXXXXXXXXXXXXXXXXXXXXXXXXXXAGRRKVRKLDQEQPQQRLPGEMGPPLXXXXXXXXXXXX--------EGNDDGGAQKYVAPVGFVCLSKASVEDGGIDWGPKTLLLRCQARPA---DISREEASXXXXXXXXXXXXXGG--SASVRARRRVGTKICVELRVPSPEVGERWAALFRERAALEMASLFEPSPPDFEDNTKGGGSSDSGSGDHLSGGGDXXXXXXXXXXA-EGGVETDTGFSVLGTGRFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXX-------------------GIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV 2252
            RGSETTP +PPAGV AAGEWGATSKSNLRP+PADS KG G+GGGGIGARSTSALLDKLAHEQDRGQ+VMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYE AS        QEGTRRNRCRSDGAPA+PPVAAGE    REARG+ASGVLLPQGG GKRDGPDE+TSP GAAV+DREAEVAA         PPSPFEPLSLGEVYIRTAPASDLAP GVGAGPWRRRWLVLRQTYMFELLEPPSPPVPTLVL S QAG  XXXXXXXX PLSDAVAVD TA F                 XXXXXXXXX    KVRKLDQEQPQQRLPGEMGP  XXXXXXXXXXX               GAQ+YVAPVGFVCLSKASVEDGGIDWGPKTLLL C A+ A    +++  A  XXXXXXXXXXXX    SASVRARRRVGTKICVELRVPSPE+GERWAALFRERAALEMASLFEP PPDFEDNTKG                 XXXXXX      EG VETDTGFSVLGTGRFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGA+AASGA XXXXXXXXXXXXXXXXXXXXXX                    GIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLL A+
Sbjct:  458 RGSETTPTQPPAGVHAAGEWGATSKSNLRPMPADSGKGFGVGGGGIGARSTSALLDKLAHEQDRGQSVMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYEAASXXXXXXXXQEGTRRNRCRSDGAPAIPPVAAGEVP--REARGQASGVLLPQGGNGKRDGPDEETSPLGAAVVDREAEVAAAGAI-----PPSPFEPLSLGEVYIRTAPASDLAPAGVGAGPWRRRWLVLRQTYMFELLEPPSPPVPTLVLASGQAGXXXXXXXXXXXPLSDAVAVDGTAVFFGSRSRGGDEGGATAVEXXXXXXXXXXXXXKVRKLDQEQPQQRLPGEMGPXXXXXXXXXXXXXRGXXXXXXXXXXXXXGAQQYVAPVGFVCLSKASVEDGGIDWGPKTLLLSCGAKLAPRTSLAKRLAPPXXXXXXXXXXXXXXXXSASVRARRRVGTKICVELRVPSPEIGERWAALFRERAALEMASLFEPCPPDFEDNTKGXXXXXXXXXXXXXXXXXXXXXXXRFSGVTEGAVETDTGFSVLGTGRFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGAEAASGAAXXXXXXXXXXXXXXXXXXXXXXSSRGAGGPGAVGACDGAGGGGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLLAI 1146
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BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Match: A0A836CCZ2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCZ2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.740e-14
Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 3 
Query: 1800 SVLGTGRFSRVVWARRKRPWARA---GGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKG-ADAASGAXXXXXXXXXXXXXXXXXXXXXXXXGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV 2252
            + LG GRF+ V  AR +   A A    G+  A+KI +K  FW RV +G+ER DTL RE   Q  L+  G A A SG                          +V++ ++FET D  ++EM+LMSR++LF  L  R G  SEREAA + + LL AV
Sbjct:  335 ATLGHGRFACVKKARARHSCASATAAAGASCAVKIFDKAEFWRRVEIGQERADTLVREAAVQAALSSSGGAGAGSGGSDT----------------------VVQLRNVFETRDTFVVEMELMSRSNLFHELA-RAGVLSEREAAPILQCLLRAV 466
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BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Match: A0A4D9D3Z8_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3Z8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.850e-14
Identity = 52/126 (41.27%), Postives = 68/126 (53.97%), Query Frame = 3 
Query: 1875 SVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXXGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV 2252
            +V A+KIVNK AFW+RV  GKER DTL REV  Q  LT +G ++A                            IVR++S FET D L+LE++LMSR+DLFD L    G   E + A +   ++ AV
Sbjct:  479 AVCALKIVNKTAFWTRVAEGKERQDTLVREVVAQAVLTARGGESAG----------------------PDRCPIVRLYSAFETQDCLVLELELMSRSDLFDEL-STSGVLKENKTAAIVHQVVRAV 581
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BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Match: A0A7S3PNM5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PNM5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.590e-14
Identity = 56/149 (37.58%), Postives = 77/149 (51.68%), Query Frame = 3 
Query: 1806 LGTGRFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXXGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV 2252
            +G GRF+ VV A+RK       GS+ A+K VNK+ FWS V VGKER DT++RE+  Q  LT    D +                           GIV++  IFET D L++EMDLM R DLF +L+ +    SE   A + ++L   +
Sbjct:  155 IGQGRFAHVVPAQRKDD-----GSMCAVKFVNKRDFWSLVEVGKERNDTISREIATQLYLTHLSQDRSE----------------------KRCGGIVKLRDIFETKDFLVMEMDLMDRVDLF-QLVSKKKRLSENHTARIIKHLAKTI 275
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BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Match: A0A485KY82_9STRA (Aste57867_13497 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KY82_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.700e-11
Identity = 57/149 (38.26%), Postives = 78/149 (52.35%), Query Frame = 3 
Query: 1806 LGTGRFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXXGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV 2252
            LG GRFS V  A+RK P A A    SA+KIV+K AFW  V  G ER DTL REV  Q+ LT++                                 +V++ S+FET D L++EM+LM   D+FDR+ ++ G F ER+AA    +L+  +
Sbjct:  556 LGQGRFSVVKRAQRKIPSACA--KESALKIVDKAAFWELVAQGIERNDTLFREVLTQSVLTMR-------------------------CPRSHECFVVQLLSLFETHDHLVIEMELMHGGDVFDRIADQ-GPFPERQAAVFVSHLVQGI 676
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BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Match: K0SDA8_THAOC (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SDA8_THAOC)

HSP 1 Score: 77.4 bits (189), Expect = 1.880e-11
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 3 
Query: 1884 AIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXXGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV 2252
            A+KIV+K  FWSRVR G+ER DTL REV  QT+L ++    ++G                           +R+ ++FETA+ L+LE++L+  TDLF  +  R G   E EAA + R+LL  +
Sbjct:   92 ALKIVDKSEFWSRVRKGRERADTLVREVSVQTSLAVRPYAGSTGPPSGTSPSP-----------------FLRLRNVFETAESLVLELELLGGTDLFRHVSSR-GVLDEVEAASIMRDLLSCL 196
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BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Match: A0A836CCD0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.860e-10
Identity = 58/163 (35.58%), Postives = 77/163 (47.24%), Query Frame = 3 
Query: 1806 LGTGRFSRVVWARRKR---PWARAGGSVSA-----------IKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXXGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV 2252
            LG GR++ V  ARR+    P   A  +V A           +K+++K+ F+ RV  GKER D L REV  Q  LT +   AA   XX                       IVR+   FET   L+LE++LMS  DLFDRL    G   + +AA L R++L A 
Sbjct:  177 LGRGRYTSVHRARRRALPPPQGPAAAAVDAAAAEHDLALCALKLIDKRRFFRRVAEGKERPDALVREVLAQAVLTARCGGAAXXXXXDGGC------------------AIVRLRGAFETESQLVLELELMSGVDLFDRL-SSGGVLGDADAAALVRSVLRAA 320
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BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Match: A0A7S2KLW1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KLW1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.860e-10
Identity = 51/149 (34.23%), Postives = 75/149 (50.34%), Query Frame = 3 
Query: 1806 LGTGRFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXXGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV 2252
            +G GR++ +  A+R      + GS  A+K+++K  FW RV  G+ERVDTL REV  Q TLT       SG                           V+IH IFET ++ +LE++L+  TDLF R +       E EAA + R++L ++
Sbjct:  219 MGHGRYASIFKAQR----VSSAGSECALKVIDKNEFWGRVSSGRERVDTLVREVAVQATLT-------SGEYQDF---------------------FVKIHGIFETTENFVLELELLDGTDLF-RHISSKMVLEEYEAALIMRDILMSL 334
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BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Match: T0R5M1_SAPDV (Serine/threonine protein kinase n=3 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R5M1_SAPDV)

HSP 1 Score: 73.6 bits (179), Expect = 1.090e-9
Identity = 52/149 (34.90%), Postives = 77/149 (51.68%), Query Frame = 3 
Query: 1806 LGTGRFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREVFCQTTLTIKGADAASGAXXXXXXXXXXXXXXXXXXXXXXXXGIVRIHSIFETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV 2252
            LG GRF+ V  A RK   AR      AIK+++K AFW  V+ G ER DTL REV  Q+ LT++G                                +VR+ S+FET D L++EM+LM+  D++D ++   G  SE +AA +  +L+ ++
Sbjct:  628 LGKGRFAMVKRAERKH-LARCSHEC-AIKVIDKAAFWDLVQEGVERNDTLFREVLTQSVLTLRGHGVPHHGY------------------------VVRLLSLFETHDHLVMEMELMAGGDIYDHIVTH-GPLSEPQAALVMTHLVQSI 749
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1300.2467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZN9_ECTSI5.760e-30780.06Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KPH2_9PHAE5.970e-28878.16Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A836CCZ2_9STRA5.740e-1438.71Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A4D9D3Z8_9STRA6.850e-1441.27Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A7S3PNM5_9STRA9.590e-1437.58Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A485KY82_9STRA1.700e-1138.26Aste57867_13497 protein n=1 Tax=Aphanomyces stella... [more]
K0SDA8_THAOC1.880e-1137.40Protein kinase domain-containing protein (Fragment... [more]
A0A836CCD0_9STRA3.860e-1035.58Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2KLW1_9STRA3.860e-1034.23Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
T0R5M1_SAPDV1.090e-934.90Serine/threonine protein kinase n=3 Tax=Saprolegni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1300contigEcto-sp13_S_contig1300:698..6781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score868.2
Seed ortholog evalue2.7e-249
Seed eggNOG ortholog2880.D7FZN9
Model size2252
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-08_001170.1
Cds size2235
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1300.2467.1prot_Ecto-sp13_S_contig1300.2467.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1300 698..6764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462696.818807-CDS-Ecto-sp13_S_contig1300:697..8141681462696.818807-CDS-Ecto-sp13_S_contig1300:697..814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1300 698..814 -
1681462696.8311486-CDS-Ecto-sp13_S_contig1300:1993..22361681462696.8311486-CDS-Ecto-sp13_S_contig1300:1993..2236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1300 1994..2236 -
1681462696.8411694-CDS-Ecto-sp13_S_contig1300:2705..29661681462696.8411694-CDS-Ecto-sp13_S_contig1300:2705..2966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1300 2706..2966 -
1681462696.848831-CDS-Ecto-sp13_S_contig1300:3872..40801681462696.848831-CDS-Ecto-sp13_S_contig1300:3872..4080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1300 3873..4080 -
1681462696.8568847-CDS-Ecto-sp13_S_contig1300:4564..55201681462696.8568847-CDS-Ecto-sp13_S_contig1300:4564..5520Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1300 4565..5520 -
1681462696.8654544-CDS-Ecto-sp13_S_contig1300:6314..67641681462696.8654544-CDS-Ecto-sp13_S_contig1300:6314..6764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1300 6315..6764 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462696.8744016-UTR-Ecto-sp13_S_contig1300:6764..67811681462696.8744016-UTR-Ecto-sp13_S_contig1300:6764..6781Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1300 6765..6781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1300.2467.1

>prot_Ecto-sp13_S_contig1300.2467.1 ID=prot_Ecto-sp13_S_contig1300.2467.1|Name=mRNA_Ecto-sp13_S_contig1300.2467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=745bp
MTAAAAAAAATGRAAAAEEPTVPAHGPPAGQARSVAGAAAPPAESSGGPS
RRDGGSSNSSSVVGGAQQRQHEDEEQEEKQQKARGSETTPRRPPAGVDAA
GEWGATSKSNLRPIPADSSKGIGMGGGGIGARSTSALLDKLAHEQDRGQA
VMMPLMNWDDWTPDRLHWTYPAVVHAFPRCLYEGASTTTTRRSRQEGTRR
NRCRSDGAPAMPPVAAGEGEGAREARGRASGVLLPQGGAGKRDGPDEDTS
PWGAAVIDREAEVAAAAAAAAAANPPSPFEPLSLGEVYIRTAPASDLAPV
GVGAGPWRRRWLVLRQTYMFELLEPPSPPVPTLVLTSRQAGAQPQPQPQP
PPLSDAVAVDDTAAFFDSRRRGGDEGGATAVEQGGGSLEDEAGRRKVRKL
DQEQPQQRLPGEMGPPLPPPPPPARDEDREGNDDGGAQKYVAPVGFVCLS
KASVEDGGIDWGPKTLLLRCQARPADISREEASAAAVIGGGDDDVIGGSA
SVRARRRVGTKICVELRVPSPEVGERWAALFRERAALEMASLFEPSPPDF
EDNTKGGGSSDSGSGDHLSGGGDGGGGGGFSGGAEGGVETDTGFSVLGTG
RFSRVVWARRKRPWARAGGSVSAIKIVNKQAFWSRVRVGKERVDTLAREV
FCQTTLTIKGADAASGAAAGDDPSSEESSEELIASDGTGGGGIVRIHSIF
ETADDLILEMDLMSRTDLFDRLLERDGAFSEREAAGLTRNLLHAV
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mRNA from alignment at Ecto-sp13_S_contig1300:698..6781-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1300.2467.1 ID=mRNA_Ecto-sp13_S_contig1300.2467.1|Name=mRNA_Ecto-sp13_S_contig1300.2467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6084bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1300:698..6781- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGAAAGCGGCAAGTCATGACCGCCGCTGCCGCCGCCGCCGCCGCCACT
GGCCGGGCGGCAGCGGCAGAAGAGCCGACTGTGCCCGCCCATGGGCCGCC
GGCCGGACAAGCTAGATCCGTGGCTGGTGCAGCAGCCCCGCCTGCCGAAA
GCAGCGGCGGCCCTTCGCGCCGTGATGGCGGCAGCAGCAACAGCAGCAGC
GTCGTTGGAGGTGCGCAGCAACGCCAGCACGAGGACGAGGAGCAGGAGGA
GAAACAACAGAAGGCTCGGGGATCGGAGACGACCCCGAGGCGACCGCCCG
CGGGGGTAGACGCGGCGGGTGAGTGGGGGGCTACCAGCAAGAGCAACCTT
CGACCGATTCCCGCAGACAGCAGCAAGGGGATCGGCATGGGAGGTGGGGG
CATAGGCGCGAGGTCGACATCGGCGCTGCTGGACAAGCTGGCCCACGAGC
AAGATCGCGGGCAGGCGGTGAGTGAGACTCCGGCGCAGCAGTCTACGCAG
GTTTATATGTCAGAAAGCATTTTTGGATTCAGAATCGGCTAAGTTTGGGT
GTTAGGGTCTGCGTACCCCTGCCTGGTGTTTTTTCGTGATAAGCTTGCGT
TCTTTGCGTAAGCATTTCCCTCCAGCGGGAGGGAAACGTATCCTGCCGCC
GAATGCGCATGCATGGTACTAGGCGCGGGATAGACGTACATCTTTATTTC
AATATGCGGGACCTTGCCAGCTGGTTAGCTGCTGTGCGTGTTCGGTCGTG
TTGTAGGTTGTGTAGAATTGGTTCCGGTCCGTGCATCGTTTGACGTTTTT
TTTTGTTTCGTTGTTTTTTGTTTGTTTAGGTGTTTCTTGTTTTTTTGTCG
TCGACGTGTTTTTTTCGATTTGGTTTTTCGATTTGGTGTTTCGATTCTAA
TTCTTTTTGCGAAACACTTCACTCCTCCTCGCACCCTAACTGGTGGGGCT
GTAGAGTAGTGGTCCCGTGAAGGCCGCGTATACAGGGCCGGTCGCCCTTG
ATCAAGGTCGTTGAAATTGCTTCGCACGGATTGTCCAAGCTGTCTTCCAC
GCTGAAAATCGCCGGGTGTCCGGTACAAGGCGCGGCAGATCCCTTGACTC
CGTACGGCCTTATTCAGGGATCACTGGGGCACGCGTAACGCTTAGCCACC
ACCACTACAGCCGCAGTCTGGTGTCGCCTCCTGCACTACCGCGGCAGCGG
GACACGGCATTCTCCTCTGACGTCGAACACGCCGCCGTGCACAACAACTC
AACCGACACAGGTGATGATGCCTTTGATGAACTGGGACGACTGGACCCCG
GACCGCCTGCACTGGACGTACCCGGCCGTCGTGCACGCCTTCCCGCGGTG
CCTCTACGAGGGCGCGAGCACCACCACCACCCGGCGCAGCCGGCAAGAAG
GAACGCGGCGAAACCGGTGCCGTTCCGATGGTGCACCGGCGATGCCGCCG
GTAGCGGCGGGGGAGGGAGAGGGAGCCAGGGAAGCACGAGGTCGAGCAAG
CGGGGTACTGCTGCCCCAGGGGGGGGCCGGCAAACGGGATGGACCGGACG
AGGATACCTCCCCGTGGGGGGCGGCGGTGATTGATCGAGAGGCGGAGGTG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCAAACCCTCCAAGCCCGTTCGA
GCCGCTCTCGCTGGGGGAGGTGTACATCAGAACGGCACCCGCTTCCGACC
TCGCCCCGGTCGGGGTGGGCGCGGGGCCGTGGAGGCGGCGGTGGCTCGTG
CTGCGGCAGACGTACATGTTCGAGCTCTTGGAGCCGCCGTCGCCTCCGGT
GCCCACCCTGGTTCTCACCAGCCGGCAGGCGGGGGCGCAACCGCAACCGC
AACCGCAACCGCCGCCGCTGTCTGATGCCGTGGCCGTCGACGACACCGCC
GCCTTTTTCGACAGCCGAAGGAGAGGAGGGGACGAGGGGGGGGCGACGGC
TGTCGAGCAGGGTGGCGGTAGCCTAGAAGACGAAGCGGGAAGGCGGAAGG
TCAGGAAACTCGATCAGGAGCAGCCGCAGCAACGGCTGCCGGGAGAAATG
GGGCCGCCGCTACCGCCGCCGCCGCCGCCGGCCAGAGACGAGGACCGGGA
GGGCAACGACGACGGTGGTGCCCAAAAGTACGTCGCGCCCGTGGGGTTTG
TATGTCTGAGCAAGGCGTCCGTCGAAGACGGCGGGATCGACTGGGGTCCG
AAAACCCTGCTTCTTAGGTACGTCAGCACGGGGTTCCCGGGTGTGTGTGG
GGGGGGAGATGGGTGTGATTGATTGCTCTCGCTCTCCTGTTTTGGTTACA
CCCTATCCCACTGCCGCGGTTCTCGGTGAAAACCAGCTCGGATTTTCCTC
CTGGAGCCTTTGACCGAGAGGGGTTGCAAGCGGCTGTAGGATTTGGTCAA
TCGCGGGGTGTGTAGGAGCGTCAATCTGAACCATCGCTTCGGCCAGGGCT
GGTTGTGCCAGTGATATTGTCGTTCTCGCCCAACCACGATCGAGTCAGGA
GGAATAAATACCTGCGAAAAGTTTAACAGACTCTTGCTGGTACCGTTCTG
GTTCAGGTCAGGAGAAACCCACAACTGCGAGCACTAGAGCTGTTGTCGTC
ACTGCCCAAGCGTGCGGCTGCGGGGGTCTCCACTATCCGTCGGAACCTGC
GGTTTGATCCTCCCACCGCGTGCATGTAAACGCCTGCTGGACTCGAAACA
GGTGCCAAGCTCGCCCCGCGGACATCTCTCGCGAAGAGGCTAGCGCCGCC
GCCGTCATCGGCGGCGGCGACGACGACGTCATTGGCGGGAGCGCTAGCGT
AAGGGCAAGGAGGCGGGTCGGTACGAAGATCTGCGTGGAGCTGAGGGTGC
CTAGCCCCGAGGTCGGCGAGCGCTGGGCAGCCCTCTTCCGAGAACGGGCA
GCTCTAGAGGTGAGCGGTGTGTGTATGTGTGTGTGCGTGTGTGTTCGTCG
CGTCTGTTCTGGCGCCGGTTTACAGGACTTTCGGCGTATATACCTGACGT
ATCAGCCGGGGTCACACAAGAGGAAGGCCACGCAGAAGTTTATTACTTGT
TTTTTTTCCTGTTCGTTGTTTTGCTCCATCGTTCCCCTTGGGTGCTTGCT
CTGTTGTTTTTCGCTGCAATGGTTCAGCCTTCCTTTTCCCTCGTGCGTGG
AACTATTTTTTCGGGACGGATCCACTCCATCTTCGCTGAATCCGCTTTTT
TTTCTTTTCGTCCTTGGGGATCATGACGAAGAGTCGAAACTTCGAACTAG
AGCGAAGGGGAAGGAGGGGGGTTGACACATTGCAGCCAATGGCTTACGCG
GAATGGATGGTGATCGTGACACCCGCACGCTGAGCATGAGTTTTCACTGT
GGTTGTCGTTTTGGGGACAGCGTGGGTGTACACGGCAAGGTCAATCACTG
CGGCTCGATTTGCGAACGAATAGATACGGTGAAGGCGAAGAACGGGGGTG
GGCCGGGGGTCATACATGTCTCTATCACAGCAAAGTACAGATGTCAGCCG
GTAGGAGATAAGTTGCCCGCGCGCGTGTGTGTGGGAGACAACAACTTGTT
CGTATCTCAGAGGGGACGTTATCGGTGCCAGCCTGTAACCTACATCCATT
CATGCCCCAGGATGTCAGCCAGCCATGGCTCGGTGCCAGCCTATAACCTA
AATCCATTCATGCCCCAGGAGTCAGCCAGCCAGGCCATCACTAACTCGCT
CGCCGACCGCTGGCCACAATCCCCATAATGAAGACGTCAACGCACACCAC
CCCAACTCAAATCCCTCCGCGTGTCGTCAACGTCCCGCCTCCCTAAAAAC
TCGTCCGCATGTTAGATGGCCTCTCTTTTCGAGCCCAGCCCCCCTGACTT
CGAAGACAACACCAAGGGTGGCGGCAGCAGTGACAGTGGCAGCGGTGACC
ACCTCAGCGGAGGGGGTGACGGCGGTGGAGGGGGGGGATTCAGTGGCGGC
GCAGAGGGGGGGGTCGAGACGGACACCGGTTTTTCCGTGCTCGGGACAGG
GCGTTTCTCCAGGGTGGTGTGGGCCAGAAGGAAGCGGCCCTGGGCGAGGG
CTGGGGGTAGCGTCTCGGCGATAAAGGTATGTTTCGGCAATAATTCGTTG
CTGGCTGACCTCAAAGCCTGGTTTCGATCGTAGAAGATGGGAGTCAGAGA
GAGGCGCGCTGGCCAGCTTTTGATCGCCACAAACAGTAGTTGATACGTTT
GTGTATTGCATGTTAGTCTAAACAGGAGCTGCGCGAATCGTGGAAGGGTA
GTTGCTCTACCTGCAGATCTGCTCTAGATGATGCCAGCTACAAAACATCG
TTTCTGCTACATTTTCGTGCAGAGGTTGAACATTGCAGCTACTTGGCGGG
GGCGGGGCCAAGGGTGTTTTTCTTCATCACACAGGTCACTGTAAGTAAGA
TGTGCATTTTTCCGTTGAAGCAATGCCTATCTTTCTCTGCTGATATCAGT
ATCATGTTGTAAGCTAGAGACATCCCCGTACCAATAACACTGCTGTACCT
GAAAGACTTGAGCTACTCCAACCCCCTGTCCCCCGTATTTGGCAGATTGT
CAACAAGCAGGCGTTCTGGTCCCGCGTCCGCGTCGGCAAGGAGCGGGTGG
ACACCCTTGCCAGGGAAGTCTTCTGCCAGACCACCCTGACCATCAAGGGC
GCGGATGCCGCTTCGGGAGCAGCAGCCGGCGATGACCCCTCCTCCGAAGA
AAGTTCCGAAGAACTGATCGCCTCTGACGGCACCGGGGGCGGGGGGATCG
TCCGCATCCACAGCATCTTTGAGACGGCGGATGACTTGGTGAGTGATTGG
GAGTGCGGGGCGGAGACGCGCCTCCTTTTGTGTGGGAGGTGGTTGAGAGA
GGCGTGTCTTGTGTTTGGGCTTTGTGGTTGGTTGCAAACAGGCGTTGGGG
GGAGCTAATATCGGTTGATCGCCAGCATGTGCTGCTGCAGTGTGCTGTCG
CGGTTGAGCGGGTGATGTTGCGACCCTGCAAGTGGAGTCTCGCTGTGGCC
TACCATAAGGCTAAGGTTATTTGCGATGCTAGTGGAGCTCCATTTTGACC
TAAAGGACCCGCGAAAGGTTTCCGTGACAGACCACAGCTAGTGAGATCGA
GAGGGCATGCAAAGGTTTTGGGACGATCGAGTAGCAGCGCACCCCATGCA
TGCCCTTATGCACGGTCGAAGTCGAAGAATACCTGGAACGGAAACGGATC
CTGAAAAATGAGCCTGCCTGTATCTCCTTGTTTTGCGTCAGCTGTGGCGG
GGAGGATGGACGGCGAGCAGCAATTTCAGAAACCCCAGCAACTTTAAAAG
CGCACGTCGTTGCCAGGATGCTTTGAGCTAGCATCGAGTACGATGCAGTA
CCTTCAACACGTGCCAGAATTACACACTTAGAAACTATATAGGGCAGCTA
TATACAACCGAGTACGGTACAGTACCTTCAACATGTGCCAGAATTGCAAA
CTTTGAAACTATATAGGGCAGCTATTTACAACTTCGAATAGAACTGTTTC
GGTTTGTTCGAAGAGCAGTTGAAGACTTGCTACATCCCACCGACATCTTA
CTTCATTTGCCAGCTCCCAAACCTCAAGCAAGTCGTCGAACTGAATAACA
AAGTACAGGCGGCGGGAGCGCGTCATGGCTTCGGGTTTCGCCGTTAGACG
AAAGGCCTCTGCCTGTACGTATGGATGATGTATGCACGTGTCACTCCTCA
GCATACATTCCCGACGATGCGGACATGATCATTGGTGGAGTTGGCTCGCA
AACGAGTATTGTGTGCCACCATATATCCTGGTTGAAAAAATGCCTGGAAT
GCCGAAGTGACCAACACATTGCTGCGAATCAAACTCGCAAATGAGAACTG
TACGCCACAAAATTCGCCCTCAAAAAGTGCCTGGAATGAAACTCATTGTG
TCAAGCTGCTGAGTATTCCGCGACCAACTAGAGCCGTGCAACCTTTTCCC
GCGAAATCTACTTCCAGATCCTGGAGATGGACCTCATGTCGAGGACGGAC
CTGTTCGACCGCCTGTTGGAGCGGGACGGCGCCTTTTCGGAGAGGGAGGC
GGCGGGGTTGACCCGAAACTTGCTTCACGCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1300:698..6781-

>mRNA_Ecto-sp13_S_contig1300.2467.1 ID=mRNA_Ecto-sp13_S_contig1300.2467.1|Name=mRNA_Ecto-sp13_S_contig1300.2467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1300:698..6781- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGCCGCTGCCGCCGCCGCCGCCGCCACTGGCCGGGCGGCAGCGGC
AGAAGAGCCGACTGTGCCCGCCCATGGGCCGCCGGCCGGACAAGCTAGAT
CCGTGGCTGGTGCAGCAGCCCCGCCTGCCGAAAGCAGCGGCGGCCCTTCG
CGCCGTGATGGCGGCAGCAGCAACAGCAGCAGCGTCGTTGGAGGTGCGCA
GCAACGCCAGCACGAGGACGAGGAGCAGGAGGAGAAACAACAGAAGGCTC
GGGGATCGGAGACGACCCCGAGGCGACCGCCCGCGGGGGTAGACGCGGCG
GGTGAGTGGGGGGCTACCAGCAAGAGCAACCTTCGACCGATTCCCGCAGA
CAGCAGCAAGGGGATCGGCATGGGAGGTGGGGGCATAGGCGCGAGGTCGA
CATCGGCGCTGCTGGACAAGCTGGCCCACGAGCAAGATCGCGGGCAGGCG
GTGATGATGCCTTTGATGAACTGGGACGACTGGACCCCGGACCGCCTGCA
CTGGACGTACCCGGCCGTCGTGCACGCCTTCCCGCGGTGCCTCTACGAGG
GCGCGAGCACCACCACCACCCGGCGCAGCCGGCAAGAAGGAACGCGGCGA
AACCGGTGCCGTTCCGATGGTGCACCGGCGATGCCGCCGGTAGCGGCGGG
GGAGGGAGAGGGAGCCAGGGAAGCACGAGGTCGAGCAAGCGGGGTACTGC
TGCCCCAGGGGGGGGCCGGCAAACGGGATGGACCGGACGAGGATACCTCC
CCGTGGGGGGCGGCGGTGATTGATCGAGAGGCGGAGGTGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCAAACCCTCCAAGCCCGTTCGAGCCGCTCTCGC
TGGGGGAGGTGTACATCAGAACGGCACCCGCTTCCGACCTCGCCCCGGTC
GGGGTGGGCGCGGGGCCGTGGAGGCGGCGGTGGCTCGTGCTGCGGCAGAC
GTACATGTTCGAGCTCTTGGAGCCGCCGTCGCCTCCGGTGCCCACCCTGG
TTCTCACCAGCCGGCAGGCGGGGGCGCAACCGCAACCGCAACCGCAACCG
CCGCCGCTGTCTGATGCCGTGGCCGTCGACGACACCGCCGCCTTTTTCGA
CAGCCGAAGGAGAGGAGGGGACGAGGGGGGGGCGACGGCTGTCGAGCAGG
GTGGCGGTAGCCTAGAAGACGAAGCGGGAAGGCGGAAGGTCAGGAAACTC
GATCAGGAGCAGCCGCAGCAACGGCTGCCGGGAGAAATGGGGCCGCCGCT
ACCGCCGCCGCCGCCGCCGGCCAGAGACGAGGACCGGGAGGGCAACGACG
ACGGTGGTGCCCAAAAGTACGTCGCGCCCGTGGGGTTTGTATGTCTGAGC
AAGGCGTCCGTCGAAGACGGCGGGATCGACTGGGGTCCGAAAACCCTGCT
TCTTAGGTGCCAAGCTCGCCCCGCGGACATCTCTCGCGAAGAGGCTAGCG
CCGCCGCCGTCATCGGCGGCGGCGACGACGACGTCATTGGCGGGAGCGCT
AGCGTAAGGGCAAGGAGGCGGGTCGGTACGAAGATCTGCGTGGAGCTGAG
GGTGCCTAGCCCCGAGGTCGGCGAGCGCTGGGCAGCCCTCTTCCGAGAAC
GGGCAGCTCTAGAGATGGCCTCTCTTTTCGAGCCCAGCCCCCCTGACTTC
GAAGACAACACCAAGGGTGGCGGCAGCAGTGACAGTGGCAGCGGTGACCA
CCTCAGCGGAGGGGGTGACGGCGGTGGAGGGGGGGGATTCAGTGGCGGCG
CAGAGGGGGGGGTCGAGACGGACACCGGTTTTTCCGTGCTCGGGACAGGG
CGTTTCTCCAGGGTGGTGTGGGCCAGAAGGAAGCGGCCCTGGGCGAGGGC
TGGGGGTAGCGTCTCGGCGATAAAGATTGTCAACAAGCAGGCGTTCTGGT
CCCGCGTCCGCGTCGGCAAGGAGCGGGTGGACACCCTTGCCAGGGAAGTC
TTCTGCCAGACCACCCTGACCATCAAGGGCGCGGATGCCGCTTCGGGAGC
AGCAGCCGGCGATGACCCCTCCTCCGAAGAAAGTTCCGAAGAACTGATCG
CCTCTGACGGCACCGGGGGCGGGGGGATCGTCCGCATCCACAGCATCTTT
GAGACGGCGGATGACTTGATCCTGGAGATGGACCTCATGTCGAGGACGGA
CCTGTTCGACCGCCTGTTGGAGCGGGACGGCGCCTTTTCGGAGAGGGAGG
CGGCGGGGTTGACCCGAAACTTGCTTCACGCGGTG
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