mRNA_Ecto-sp13_S_contig10224.247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10224.247.1
Unique NamemRNA_Ecto-sp13_S_contig10224.247.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10224.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10224contigEcto-sp13_S_contig10224:1035..3375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size176
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.642584-UTR-Ecto-sp13_S_contig10224:1034..10841681462516.642584-UTR-Ecto-sp13_S_contig10224:1034..1084Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10224 1035..1084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.6579645-CDS-Ecto-sp13_S_contig10224:1084..11141681462516.6579645-CDS-Ecto-sp13_S_contig10224:1084..1114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10224 1085..1114 -
1681462516.6723952-CDS-Ecto-sp13_S_contig10224:3279..33751681462516.6723952-CDS-Ecto-sp13_S_contig10224:3279..3375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10224 3280..3375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10224.247.1prot_Ecto-sp13_S_contig10224.247.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10224 1085..3375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10224.247.1

>prot_Ecto-sp13_S_contig10224.247.1 ID=prot_Ecto-sp13_S_contig10224.247.1|Name=mRNA_Ecto-sp13_S_contig10224.247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MRARFISRLQPKCTRPDGNDQRCTFGAGGCRNGVDVPDSIM*
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mRNA from alignment at Ecto-sp13_S_contig10224:1035..3375-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10224.247.1 ID=mRNA_Ecto-sp13_S_contig10224.247.1|Name=mRNA_Ecto-sp13_S_contig10224.247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10224:1035..3375- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGCCAGGTTTATCAGCCGGTTGCAACCTAAATGCACGCGACCAGA
CGGGAATGACCAACGCTGTACCTTCGGGGCTGGTGGTTGTCGTAATGTAA
GCCAAGGACCGCGGTGCACTAGGAGGAACAGTTCAAAGCATGACATCTAC
TTGGCACGACGGAAGACTCGTCGAAGTTACCCACGAGCTGAGTTATGTTC
GAAACTTGCCCTACATATTCGAACCGCACAACGCGACCGAATTGTTTTTT
GTTGCTCGTACACGTTGCAAACTTAGCCGAGAGATTCGCCAACATGTAGC
CAAGGGAACCCATGCTATGTTCGTTGCTACGGCAGAAGACGAATGTGCCG
TAGCGGACGGGACAAACACCTGCGGGTTGTAGCGCCTCCTGATTTCCTCT
ACGGTGTAGCGAGAAAAACTGTTGCCGATTCATAAATTCGTAAACTCCGA
ACAAGTGCACCTCGTTCAGCGCTCGTTAAAGTTGCGATCCTGCAGCAGCC
CCTTGTAATATCTTCATTCGGTTATCCATGGTTTATCCATGCGCCTGTTC
GGACACCAGTATACTCCCTGATCGTTCGTTGGACAAGTTGACAATGCTGA
TTTTGGTTTGGCTTGAATGCGCTGCTGTCCGAAAGAAGTTGCTCAAGTAG
ACATGTTGAGCACCTTGTTTGTGGCAGCTCGCTTTTATTTTTTATTGTCT
ACTCGAGCACCGATACAATATTCGAATGCAGCACCTGAGGCACGCCGGGC
ACGACGGTTAGTGCACGTACAGTGCTAGTTTTCGGGTGGCAACACCGTAC
CAAGATGACGTAGTCGTACCAAGACATTTGTCCATTTTTTAGGAAAAGGT
AGTAAGTAAACAGGAGAGGGAGTTGAAGTACGTCGGGATAGGGTATCTCG
TCTTCCTATCTGTACACTTCTTTCTGGGAAAGAATGCGCCGTTGGGTGCT
CTTGGGCCCTTAAAAATACCAGTCGCCCGGAGCCAATATCTGCAGCGGCC
TGGTGTTGAGGTAGGTGCGTTGCTTTGTGACCTTTTGTCAGGGAATTGTC
TGAAACTCAGCGCCGGGCGAACGATGTTCGAAAGCAGGAACCGGGTCCGG
AAAGATGAAGAAGCGATAAACCTCCTAGGTAAGGAGCACGTGCTCTTCTT
TTTCCCGCGGTTTGAAGTGGTTGTGGCTTCGCACCCATCCATTGATCGGC
GAGTTGTTTCGTCGAAGTGTGTTTGTGTGATTTTTGCTGTCCTCTTTTTC
TGGGTTGTGGTGAGGCTGTATTTTTTTCGCCATGCATTTTTCCTCTCTGC
GTCACGAGGGGTGATCATCCGATATTATGCAGTTTTTCTTGCTTGGTCTT
TATTTGATGAACACAGTTCATGAGTAACGCACGAATTTGTCTTGTGAGCA
AACATGTTGGATATGTTCATGTATGTGGAATTGGTGTAACTCCGAGGTTC
GGTTTGGGCTAGAGTTCAGGGCTATGAGTAATGTACATGGAGCATCTCCC
GGCAGTGTAACCTGATTTGTGTGCGGGTTGTTTTGTAGTAGGCTTCGGGT
GGTCAGCTAAAGATGTGGTCGCTACATTGATAACTAGCTGCAATGCTCGA
CAGGTCTGGGTCCTTTCGCACAATGAGGTGCACCCACAGGATCTACGTAG
TACCCCCTGCGCCTCTCGATGTTCTATAATAACGTTATCTCTTCATATCT
AGGGGGTCCCTCTGTCAAGGTTCGAAGTTCATTAATTCAGTAGAGGGATC
GGTACCTCTCCATTGTAGATAATGGCATTTCGGTGCTGACCCAGCGTCCA
CACTCGGCCAGGGCTTTCCTTTTGGGTTTTTGGTGTCCTTTTTTTCTCTG
GTCTGGAGTCATGTGACGTATTGGCTTGCTTTTTTTAGTAGTTGTTTTCG
TTTGAACTTTGGAAGATCACCTGTGCAGTAGGAAAATCCACATGCAGGCG
GTTAGGTGCTCTCAATGACTAAGTACAGGCCTCCTGTACGAAATCGCGCC
TTGATGGTTCAGTTAAATGTTGACGTTACACGAGCTACATACACGCCGTG
CCGCCAGACGCACCCCACTACCGAAATGTTCGCATTAGGTATTTTTAGTG
GTTCGATCGTAGCCACGATAGGGATGAGGCCTGGGTTGCGCATTGTCAGT
CCGACAGTTCGGACCCCCATGACATCGCCATACGTAGATGGAGTCCCAGG
GGGTGTTCCAAGGACACGGATGTATTGACGAAAACCCTTGCTACATTTCA
CCACCCCACAGGGAGTCGATGTCCCTGACTCGATTATGTAAAGGCTTGGA
ACACGTCTACTTCGTTCGGGAGGTCTGTCTCGATCCGGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10224:1035..3375-

>mRNA_Ecto-sp13_S_contig10224.247.1 ID=mRNA_Ecto-sp13_S_contig10224.247.1|Name=mRNA_Ecto-sp13_S_contig10224.247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10224:1035..3375- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGCCAGGTTTATCAGCCGGTTGCAACCTAAATGCACGCGACCAGA
CGGGAATGACCAACGCTGTACCTTCGGGGCTGGTGGTTGTCGTAATGGAG
TCGATGTCCCTGACTCGATTATGTAA
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