mRNA_Ecto-sp13_S_contig130.2465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig130.2465.1
Unique NamemRNA_Ecto-sp13_S_contig130.2465.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig130.2465.1 vs. uniprot
Match: D7FQJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ1_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 5.570e-65
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 3 
Query:  789 MPDLTSRMREANSSPEANRELMLRIRRSNVQLGDGRIKTLTTSQHDSMDEIVEATSKMEPGFNARTKQDPRFSSIELGNPAAENLWTTSNRMPNWYAPETYARQTTPNF 1115
            MPDL SRMREANSSPEANRELMLRIRRSNVQLGDGRIKTLTTSQHDSMDEIVEATSKMEPGFNARTKQDPRFSSIELG+PAAENLWTTSNRMPNWYAPETYARQTTPNF
Sbjct:    1 MPDLRSRMREANSSPEANRELMLRIRRSNVQLGDGRIKTLTTSQHDSMDEIVEATSKMEPGFNARTKQDPRFSSIELGDPAAENLWTTSNRMPNWYAPETYARQTTPNF 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig130.2465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQJ1_ECTSI5.570e-6598.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig130contigEcto-sp13_S_contig130:30224..34598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1814
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_008870.1
Cds size987
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig130.2465.1prot_Ecto-sp13_S_contig130.2465.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig130 30920..34467 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462696.6244748-UTR-Ecto-sp13_S_contig130:30223..309191681462696.6244748-UTR-Ecto-sp13_S_contig130:30223..30919Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig130 30224..30919 -
1681462696.718045-UTR-Ecto-sp13_S_contig130:34467..345981681462696.718045-UTR-Ecto-sp13_S_contig130:34467..34598Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig130 34468..34598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462696.6337934-CDS-Ecto-sp13_S_contig130:30919..309941681462696.6337934-CDS-Ecto-sp13_S_contig130:30919..30994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 30920..30994 -
1681462696.651661-CDS-Ecto-sp13_S_contig130:31461..316021681462696.651661-CDS-Ecto-sp13_S_contig130:31461..31602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 31462..31602 -
1681462696.665543-CDS-Ecto-sp13_S_contig130:32219..323981681462696.665543-CDS-Ecto-sp13_S_contig130:32219..32398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 32220..32398 -
1681462696.685523-CDS-Ecto-sp13_S_contig130:32880..330171681462696.685523-CDS-Ecto-sp13_S_contig130:32880..33017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 32881..33017 -
1681462696.6953275-CDS-Ecto-sp13_S_contig130:33543..336851681462696.6953275-CDS-Ecto-sp13_S_contig130:33543..33685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 33544..33685 -
1681462696.70532-CDS-Ecto-sp13_S_contig130:34154..344671681462696.70532-CDS-Ecto-sp13_S_contig130:34154..34467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig130 34155..34467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig130.2465.1

>prot_Ecto-sp13_S_contig130.2465.1 ID=prot_Ecto-sp13_S_contig130.2465.1|Name=mRNA_Ecto-sp13_S_contig130.2465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=329bp
MQFVSLVTPILTSSEINVGCRRNSVSSHKGRMRNAYRRKLEPPLGPSVLA
ARNKEMKTRLSSSSLVLGDAGPETRDWSLSSTQQRPGAGALDASQRKNNL
AMKKALQTAQIVLGEDRAEWGSSNTMPAPTGDVSRYRGRLSTETANFIKT
SSLKMGSSRPGSQFTTSMSREGLKVPDYDASVELFKSNKSLHNRLREAGR
TTRIIDPDGEVGRYESSNIMPDLTSRMREANSSPEANRELMLRIRRSNVQ
LGDGRIKTLTTSQHDSMDEIVEATSKMEPGFNARTKQDPRFSSIELGNPA
AENLWTTSNRMPNWYAPETYARQTTPNF*
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mRNA from alignment at Ecto-sp13_S_contig130:30224..34598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig130.2465.1 ID=mRNA_Ecto-sp13_S_contig130.2465.1|Name=mRNA_Ecto-sp13_S_contig130.2465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig130:30224..34598- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTCTCGTTTGTTCCATATTCGAAAGAGAGGGTGAAGAGCAGCAAGGAG
CTTTGGGGGTCTGTTCGGGGCTATCTCTGTCGCTGGTGACCTGATGTATT
CCGACGCGCGTACCCACAGCGTGTCTGTTACATGCAGTTTGTTTCGTTGG
TCACCCCAATCTTGACGTCCAGTGAGATCAACGTTGGCTGTCGGCGCAAT
AGCGTCTCTTCCCATAAGGGTAGGATGCGCAATGCATACAGGAGAAAGTT
GGAGCCGCCACTAGGGCCGAGCGTGCTCGCTGCTCGCAACAAGGAGATGA
AGACAAGGTTGTCTTCTTCGTCGTTGGTCCTTGGCGATGCGGGCCCCGAG
ACAAGGGACTGGAGTCTCTCGAGCACGCAGCAGCGGCCGGGTGCCGGAGC
ACTAGATGCATCCCAGCGAAAAAACAATTTGGCAATGAAAAAAGGTGTCC
CAATTACGTCGTAGGCAGTTTGTTCTTAATTAATCGTGCGAGGTTGCAGC
GGGATACTTGTGATTTGGAGCTGTGCACTCTGATATGTACTGTGGGTCAT
CTTGTCAAGGCACCTCTTGTTCACAGACTCCCGAAATGATGGGTTGTTGA
ATCGTTTCCACAAACGGGTGGTGGGGATGAAACTTATACTCGTAAGTAGG
GGTGCCGCGGACGGGAGGCTTTCCGTGACGGAAACCGGCTTGGTTGTACT
TCGGAAGGAAATTGAAGGTTACGTTTGACGAATGGGTGGGACGAAAGGAT
AACCAAGTACACTGAAAGGGTGGTCACCTCTTCACGTGAATGACTCTCCA
CACGTGAGTGATGTCGTCGCCATGTCTTCACACCCTGTCCCCGGCCACCC
TCCCTGAACGATTATTTCCGGCCTTGTCTGCTCATCACCGCACCCACCAC
TCCTCTTTTGTAGCGTTACAAACAGCTCAAATTGTGTTAGGGGAAGATCG
CGCCGAGTGGGGATCGTCAAACACCATGCCGGCGCCAACTGGCGATGTTT
CTCGCTATAGGGGGAGGCTTAGTACCGAGACTGCAAACTTTATCAAGACC
TCCAGGTGGGCGCAGTTTTCAGTAGACCGTGGAGCACAGTCCAGGTCACG
CGACAAACCCCACTCCACTTAAGGCGGCCGTAGACTCAACGTCTTCTCGT
TTCGAGTCCCGGCGGGTCACACCACTTGAAAGCATTGGAGAAGTTGAAAA
AGGTTGAATCAGTATCTGGTTATGCGAGAAGATTACTATCCAAAAATGCC
CTTTTCAAACCTCAACAACACCTCTTTCTTAAACTACTTTGAAGCGCCCG
CTCGGTTGACCAGCACGCAACGGTACGGTTTATTGCGCAGCAGACGCGCC
TCCCAGAGACTCGGTCGCTCAATCTAGACAACATTTGGTTTCAAGGGTTT
TTATCCCTGGATGAGGCTGCTGCCAATGTGTTCTTGTTTGTGGCACCGAA
TCTTTATTTGGTGCCTTTCCTGAATGAATAAAAGCTGCTCAGGAACCTCG
CTGGACACACAACACTACCATGTACCGACGCAACGACCCCCCCCGACTCC
CTCTCCGAACACCCGCTACCCCCTTCACAAGCTTGAAAATGGGCTCGTCA
CGCCCGGGCTCTCAATTCACAACATCCATGTCAAGAGAAGGGTTGAAGGT
TCCCGACTACGACGCCTCGGTTGAGCTCTTCAAGAGCAACAAATCTCTCC
ACAACAGGCTGCGCGAAGGTGACGCGTTGACCACGGCTTCAAATCTACGA
GCGCTTAATCTAGGTGCCGTCGATTTTCCCACACACCAGTTGCACGTCTG
CTCGTTTCGATTGTTGCGCGCCCATGCGTTAGCTTGCTAGCAAAAGTCTA
TTTTGCTGCTGTGTCATCACCAACCCACAACATGCTGCATAGTGGCTGAA
AAAAGCATGGTATTACGCTGTAGGTCATGATACAGGGAGAAAAGCCCTGC
CAGTGCCCTTACCGCTCAGGCACCTGAACCACTAGGAGAAAACCAACGGT
TTATCTCCCAAGGATTTCTGAGGTTCTTCGGCATTCGGTTCACCGAGCTT
CTCGCTGGCAAGAAGTAGCATGTCACGACTTTGGAGCTGGTTCCACGAGA
AATGGGAACTGGGATCCATCTTCCTCTTCGTCGGTGTGTTTAAGTCCAGA
CAAACAGCATGAAGCGAGCGCGCCCTCCCCCCCCCCCCGCCTCCCACCAG
CGGGACGAACAACACGAATAATCGATCCCGATGGGGAGGTTGGGCGGTAC
GAGAGCAGCAACATCATGCCCGATCTGACAAGCCGGATGCGTGAGGCCAA
TTCTTCGCCGGAGGCAAACCGGGAACTGATGCTGAGGATCCGGCGTTCGA
ACGTCCAGCTCGGGGACGGCCGGATCAAGGTGATGGGATGGAACGGGGTG
GGGATGTACATGTTGTTTTCACTGTTCAGCGTTTTCCGTGTTTGGGGCCG
TTGGATGTACAACTACCGTTGCCTTTCTATACGTGTACTTGACGCACCCT
CAATCCTGGACCCCCTTCTCTAAGCTGTGTAAAAGCGCGAGGACTTCCTC
ACATCAGAAGGTTAAGAATGATGAAAAATCGGACCCTGAACGCGCTCTGT
TGTGTGTGTCCTCGCCTCTCGAAGGGGGCTATCCTATAACGCGTTATCTC
TCGTGCTCTTGCCGCTTGCTGGCCGTGGCAACACTTGCTGCACAATCGAA
TGTTGTGGTCGTGTTCCGCCCGGTATCCCTGAACCGCTCCAGTTGCGATT
GATCGTCAAACGAGTGTGTTTGGTCCTCCTGCGGTGCTGCGGACTGATTC
TATTCTTGTTTGACTCTGCTGATCACATGCCTCCCTCTCCCTGTTTTTAC
CAGAGACGACTTCTCGTGGAAACGCTGGGAACGGCAATATTTGCTACTTG
AAGAGACGACACCCATGCCCGCCCCTGATTCCTCTCGTTGTTGTTCGATT
GTTCCTACGTTCCTTCGTCGGTTGGTGTACATGCCCTGACTCGCAGACGC
TGACAACATCCCAACACGACTCGATGGACGAGATAGTGGAGGCGACGAGC
AAGATGGAGCCCGGCTTCAACGCGAGAACCAAGCAGGACCCTCGATTCTC
GAGTATCGAGCTCGGAAATCCAGCTGCGGAGAACCTTGTGCGTGCCACCA
CCGCTTGAAGAGTTGTAGATCCCGCCAAAATTACGTGCGTACTTGTGGAT
GAATGTTTTAGGAAGGAATGAGAACGTTGATTTGGATACCTGTAACTTTC
TTTGTGAGCTGAGAAAGTTGGGAGAGAAAGCTGTCAAACGACAAGAGGGT
GCACTGCGGTAGTAACGGAAACGGTCGTGATCTGGCAGAATGGCGTGCGG
TTATTTCGGCGCGGGGTAAACTCACGCACGCGTAACGGCGGCGCCCAACC
CTTGTCGTTAGACGCGTCAGGACGTTCATGCTCCTTAGGCGCGAAACGTA
GAGTTCTTGCTCTGCACAAGCACAGCAAGTGGAGGCAGGCCAGTTCCAAT
AGAACGCCCAATAACGCAACCTCTCTGCCTCAAATTTCGCTCTGTCTCTT
AATCCCCCCCTGTCCCCCCCCCCCCTCGTCTGCCCCTCTCTCTCTCGTTG
CAAGTGGACGACTTCTAACAGGATGCCAAACTGGTACGCTCCTGAAACGT
ACGCGCGACAAACGACCCCGAACTTCTGAAAACAGAAAAATTTTGAAGGA
GGTATCGTGTGGCCTCGTTGATGCTTGACTGCCCGCTGCACGCGACTGGA
CCTTGGGGGGCGACTGAGAGGAACCAAACCCTCTCTGAACAATGCCGGAA
GTAGACAACCCAGTGGCTCGAAGCAACAGAAGAATTTTGACACCGACCGG
CGGCGGACACACCCGGTCGCGAGGCGAATTTTGGTTAGAAGGGTGGGCGT
TCGAAAGACAAACTCTGAGTGGTGTTTATGGATTTCGTCCAGAGAACGGC
GGTGCGACTGCGTAATTGTTTCATTTGAACTAGTTTAAAGGCGGCATCAG
AGTAAAACAGCAACACCGACACCAAACCCACAACTACTGTACCGCACCAC
CAACGCCATGAACTGCAACAACAGCAACAGCATCGGAGAAAGAGCAGAAA
CGCCTCCTTGCGACACGACCAAGAGAGAGGAAAATGCAGAAAGGAACGGC
CACGAGGGAAAGGCTGCTGAGCACGCAAACGCCGGTAGTTGCTAGTTTTT
TTGTGGTTCATGTTCGCCCCGTTTCACGTTCTTGGAGACAAAATATTTGT
CAGAACGGCAGGGAGAGGCCGTCGTGCCAAGGCTGTCGGAGCTGCATGCT
CTTCTTGGCGTTGCGCTTGTTCCAACCGACACGGATTCTCTCGCACGTCT
CTTGCCCGATAGCATTTCTTCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig130:30224..34598-

>mRNA_Ecto-sp13_S_contig130.2465.1 ID=mRNA_Ecto-sp13_S_contig130.2465.1|Name=mRNA_Ecto-sp13_S_contig130.2465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig130:30224..34598- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTTTGTTTCGTTGGTCACCCCAATCTTGACGTCCAGTGAGATCAA
CGTTGGCTGTCGGCGCAATAGCGTCTCTTCCCATAAGGGTAGGATGCGCA
ATGCATACAGGAGAAAGTTGGAGCCGCCACTAGGGCCGAGCGTGCTCGCT
GCTCGCAACAAGGAGATGAAGACAAGGTTGTCTTCTTCGTCGTTGGTCCT
TGGCGATGCGGGCCCCGAGACAAGGGACTGGAGTCTCTCGAGCACGCAGC
AGCGGCCGGGTGCCGGAGCACTAGATGCATCCCAGCGAAAAAACAATTTG
GCAATGAAAAAAGCGTTACAAACAGCTCAAATTGTGTTAGGGGAAGATCG
CGCCGAGTGGGGATCGTCAAACACCATGCCGGCGCCAACTGGCGATGTTT
CTCGCTATAGGGGGAGGCTTAGTACCGAGACTGCAAACTTTATCAAGACC
TCCAGCTTGAAAATGGGCTCGTCACGCCCGGGCTCTCAATTCACAACATC
CATGTCAAGAGAAGGGTTGAAGGTTCCCGACTACGACGCCTCGGTTGAGC
TCTTCAAGAGCAACAAATCTCTCCACAACAGGCTGCGCGAAGCGGGACGA
ACAACACGAATAATCGATCCCGATGGGGAGGTTGGGCGGTACGAGAGCAG
CAACATCATGCCCGATCTGACAAGCCGGATGCGTGAGGCCAATTCTTCGC
CGGAGGCAAACCGGGAACTGATGCTGAGGATCCGGCGTTCGAACGTCCAG
CTCGGGGACGGCCGGATCAAGACGCTGACAACATCCCAACACGACTCGAT
GGACGAGATAGTGGAGGCGACGAGCAAGATGGAGCCCGGCTTCAACGCGA
GAACCAAGCAGGACCCTCGATTCTCGAGTATCGAGCTCGGAAATCCAGCT
GCGGAGAACCTTTGGACGACTTCTAACAGGATGCCAAACTGGTACGCTCC
TGAAACGTACGCGCGACAAACGACCCCGAACTTCTGA
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