mRNA_Ecto-sp13_S_contig130.2460.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig130.2460.1 vs. uniprot
Match: A0A6H5L4Z6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z6_9PHAE) HSP 1 Score: 155 bits (393), Expect = 1.150e-41 Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 1
Query: 1 KWSKKAGTGKNENFHGNINRLVHGVSRMSAQACGARLMQRIHRHNLDMDRKHGRTSKQTTPWQWRERDANDAAKECGVEVPFPKAGPRPNVAEEHLEPMGFEYYDKNRADELQVCRNTAAVNVAAARRREGRSTSG 408
+WSKK GTGKNENFHG INRLV+GV+R+ A+AC ARL+QRIHRHN DMDRK GRTSKQ+T W WRER AN AA+ PFP+AG P VA E EPMGFEY ++ RA+ L + AA ++ R +T+G
Sbjct: 109 RWSKKGGTGKNENFHGGINRLVNGVARLGAEACDARLLQRIHRHNHDMDRKLGRTSKQSTLWVWRERKANAAAESILTSRPFPRAGDTPTVAAEDFEPMGFEYAEQRRANALTNAKTAAANSLVLTRTSLPSTTAG 244
BLAST of mRNA_Ecto-sp13_S_contig130.2460.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 154 bits (388), Expect = 2.490e-40 Identity = 79/136 (58.09%), Postives = 97/136 (71.32%), Query Frame = 1
Query: 1 KWSKKAGTGKNENFHGNINRLVHGVSRMSAQACGARLMQRIHRHNLDMDRKHGRTSKQTTPWQWRERDANDAAKECGVEVPFPKAGPRPNVAEEHLEPMGFEYYDKNRADELQVCRNTAAVNVAAARRREGRSTSG 408
+WSKK GTGKNENFHG INRLV+GV+R+ A+AC ARL+QRIHRHN DMDRK GRTSKQ+T W WRER AN AA+ PFP+AG P VA E EP+GFEY ++ RA+ L + AA ++ R +T+G
Sbjct: 1325 RWSKKGGTGKNENFHGGINRLVNGVARLGAEACDARLLQRIHRHNHDMDRKLGRTSKQSTLWVWRERKANAAAESILTSRPFPRAGDTPTVAAEDFEPIGFEYAEQRRANALTHAKTAAANSLVNTRTSLPSTTAG 1460
BLAST of mRNA_Ecto-sp13_S_contig130.2460.1 vs. uniprot
Match: A0A6H5KAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH5_9PHAE) HSP 1 Score: 139 bits (350), Expect = 1.110e-37 Identity = 69/100 (69.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query: 1 KWSKKAGTGKNENFHGNINRLVHGVSRMSAQACGARLMQRIHRHNLDMDRKHGRTSKQTTPWQWRERDANDAAKECGVEVPFPKAGPRPNVAEEHLEPMG 300
+WSKK GTGKNENFHG INRLV+GV+R+ A+AC ARL+QRIHRHN DMDRK GRTSKQ+T W WRER AN AA+ PFP+AG P VA E EPMG
Sbjct: 19 RWSKKGGTGKNENFHGGINRLVNGVARLGAEACDARLLQRIHRHNHDMDRKLGRTSKQSTLWVWRERKANAAAESILTSRPFPRAGDTPTVAAEDFEPMG 118
BLAST of mRNA_Ecto-sp13_S_contig130.2460.1 vs. uniprot
Match: D7FTB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB2_ECTSI) HSP 1 Score: 132 bits (331), Expect = 5.730e-35 Identity = 69/134 (51.49%), Postives = 87/134 (64.93%), Query Frame = 1
Query: 1 KWSKKAGTGKNENFHGNINRLVHGVSRMSAQACGARLMQRIHRHNLDMDRKHGRTSKQTTPWQWRERDANDAAKECGVEVPFPKAGPRPNVAEEHLEPMGFEYYDKNRADELQVCRNTAAVNVAAARRREGRST 402
+WSKK GTGKNENFHG INRLV GV+R+ +AC ARL+QR++RHNLD+DRK G TS+Q+T W WRE N+A + +PFP A P + + LEP GFEY +A + N AA VA R RS+
Sbjct: 2 RWSKKGGTGKNENFHGGINRLVAGVARIGVEACDARLLQRVYRHNLDVDRKLGNTSEQSTRWPWREHVVNEAVRGVLGSLPFPTAPPDSKIPTKDLEPTGFEYRTARKAAGRREAMNAAARIVAERRGNNPRSS 135
BLAST of mRNA_Ecto-sp13_S_contig130.2460.1 vs. uniprot
Match: A0A6H5KMP1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP1_9PHAE) HSP 1 Score: 131 bits (330), Expect = 5.540e-33 Identity = 74/150 (49.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query: 1 KWSKKAGTGKNENFHGNINRLVHGVSRMSAQACGARLMQRIHRHNLDMDRKHGRTSKQTTPWQWRERDANDAAKECGVEVPFPKAGPRPN----------------VAEEHLEPMGFEYYDKNRADELQVCRNTAAVNVAAARRREGRST 402
+WSKK GTGKNENFHG INRLV GV+R+ +AC ARL+QR+ RHNLDMDRK G TSKQ+T W WRER N AA +PFPKA P P + + LEPMGFE++ +A + N A VA R RS+
Sbjct: 67 RWSKKGGTGKNENFHGGINRLVAGVARIGVEACDARLLQRVCRHNLDMDRKLGNTSKQSTRWPWRERVVNKAASGILASLPFPKAPPDPKHDVCDANSLLFVCRCQIPTKDLEPMGFEFHTARKAAGRREAMNAATRIVAERRGNNPRSS 216
BLAST of mRNA_Ecto-sp13_S_contig130.2460.1 vs. uniprot
Match: D8LRE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE7_ECTSI) HSP 1 Score: 132 bits (331), Expect = 1.150e-32 Identity = 67/121 (55.37%), Postives = 82/121 (67.77%), Query Frame = 1
Query: 1 KWSKKAGTGKNENFHGNINRLVHGVSRMSAQACGARLMQRIHRHNLDMDRKHGRTSKQTTPWQWRERDANDAAKECGVEVPFPKAGPRPNVAEEHL--EPMGFEYYDKNRADELQVCRNTA 357
++ KK GT KNE+FH ++N + VSR+ C RL+Q +HR NLD DRK GR SK +T W WRERD NDAA++C V PFPKAGPRP+V +E L EPMGFEY + R D L CR A
Sbjct: 811 RYVKKGGTAKNESFHRSLNAMTSSVSRLGPGVCDQRLLQLVHRFNLDKDRKLGRASKHSTLWVWRERDINDAARKCLVAEPFPKAGPRPDVQQEDLDAEPMGFEYAKRLREDRLGACRQAA 931 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig130.2460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig130.2460.1 >prot_Ecto-sp13_S_contig130.2460.1 ID=prot_Ecto-sp13_S_contig130.2460.1|Name=mRNA_Ecto-sp13_S_contig130.2460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp KWSKKAGTGKNENFHGNINRLVHGVSRMSAQACGARLMQRIHRHNLDMDRback to top mRNA from alignment at Ecto-sp13_S_contig130:27..754- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig130.2460.1 ID=mRNA_Ecto-sp13_S_contig130.2460.1|Name=mRNA_Ecto-sp13_S_contig130.2460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig130:27..754- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig130:27..754- >mRNA_Ecto-sp13_S_contig130.2460.1 ID=mRNA_Ecto-sp13_S_contig130.2460.1|Name=mRNA_Ecto-sp13_S_contig130.2460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig130:27..754- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |