mRNA_Ecto-sp13_S_contig12989.2452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12989.2452.1
Unique NamemRNA_Ecto-sp13_S_contig12989.2452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12989.2452.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 7.400e-97
Identity = 160/197 (81.22%), Postives = 179/197 (90.86%), Query Frame = 3 
Query:    3 QDIALSAPIRMTMRASMATPSSNSPSCAYYNENTGLWDEDGLVTEAATTPMDEGHAAGLTGLNVSCWSFHLSDFTISADEVGSGFQHVELTAGIAVALKVREISKTGVLVLLFVLLLLVVVRSASRMADVKTKLSKQLAGKTDEVYIATGKSRNRPTLAALVEADPTPDTHHRRARRRSKRRAKTTFRQHMIKRWAG 593
            +DI LSAP+RMTMRASMAT SS SPSCAYYNE TGLWDEDGLVTEAA TP+DE +A GLT LNV+CWSFHLSDFTISADEVGSGFQHV+LTAGIAV L+VR+ISK GVL+LLFVLLLLVV+R+ SRMADVKT LSK+L GKTDEVY+ATGKSRNRPTL ALV+A+PTPDTHHR AR+R +RR KTTFRQHM+KR+ G
Sbjct:  275 EDITLSAPVRMTMRASMATTSSKSPSCAYYNELTGLWDEDGLVTEAAITPIDESNAGGLTDLNVTCWSFHLSDFTISADEVGSGFQHVDLTAGIAVVLEVRDISKMGVLLLLFVLLLLVVLRTISRMADVKTNLSKELEGKTDEVYLATGKSRNRPTLGALVQANPTPDTHHRHARKRLERRVKTTFRQHMMKRYRG 471
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BLAST of mRNA_Ecto-sp13_S_contig12989.2452.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 9.040e-90
Identity = 157/193 (81.35%), Postives = 171/193 (88.60%), Query Frame = 3 
Query:    3 QDIALSAPIRMTMRASMATPSSNSPSCAYYNENTGLWDEDGLVTEAATTPMDEGHAAGLTGLNVSCWSFHLSDFTISADEVGSGFQHVELTAGIAVALKVREISKTGVLVLLFVLLLLVVVRSASRMADVKTKLSKQLAGKTDEVYIATGKSRNRPTLAALVEADPTPDTHHRRARRRSKRRAKTTFRQHMIK 581
            QDIALSAP+RMTMRASMAT  SNSPSC YYNE TGLWDEDGLVTEAA TPMDE +A GLTGLNV+CWSFHLSDFTISADEVGSGFQHV+LTAGIAV LKVREISK G L+LLFV     ++R+ +RMADVKT LSKQLA KTDEVY+ATGKSRNRPTLAALV+ADPTPDTHHR ARRR +RRAKT  RQ+M+K
Sbjct: 1247 QDIALSAPVRMTMRASMATTLSNSPSCVYYNEITGLWDEDGLVTEAAITPMDESNADGLTGLNVTCWSFHLSDFTISADEVGSGFQHVDLTAGIAVFLKVREISKMGGLLLLFVXXXXXLLRTTARMADVKTNLSKQLARKTDEVYVATGKSRNRPTLAALVQADPTPDTHHRHARRRLQRRAKTAVRQYMMK 1439
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BLAST of mRNA_Ecto-sp13_S_contig12989.2452.1 vs. uniprot
Match: D7G3A1_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A1_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.890e-28
Identity = 74/178 (41.57%), Postives = 115/178 (64.61%), Query Frame = 3 
Query:    3 QDIALSAPIRMTMRASMATPSSNSPSCAYYNENTGLWDEDGLVTEAATTPMDEGHAAGLTGLNVSCWSFHLSDFTISADEVGSGFQHVELTAGIAVALKVREISKTGVLVLLFVLLLLVVVRSASRMADVKTKLSKQLAGKTDEVYIATGKSRNRPTLAALVEADPTPDTHHRRARRR 536
            +DIAL+ P+++TMRASM T S+  PSC+YYNE TGLWD +GL   A   P+D G +A    + VSC +FHLSDF ++  E+ + FQ V L AG++V    R+++  G+++ +  L+LL +V S SR+AD ++K +++L  +  + YI TG  +  PTL  + +   T +  H+R R+R
Sbjct:  775 EDIALAGPVQLTMRASM-TSSALLPSCSYYNEETGLWDSEGLAIGAVAVPIDAGDSA--LDVLVSCVTFHLSDFGVATTEIETVFQPVTLGAGLSVV-SGRDMTVWGLVLTVGALILLGIVWSVSRIADHRSKTAEKLQTRAYDHYIETGHPQRLPTLEDIKDLKQTLERKHKRRRKR 948
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BLAST of mRNA_Ecto-sp13_S_contig12989.2452.1 vs. uniprot
Match: D7G3A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A0_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.700e-27
Identity = 73/178 (41.01%), Postives = 113/178 (63.48%), Query Frame = 3 
Query:    3 QDIALSAPIRMTMRASMATPSSNSPSCAYYNENTGLWDEDGLVTEAATTPMDEGHAAGLTGLNVSCWSFHLSDFTISADEVGSGFQHVELTAGIAVALKVREISKTGVLVLLFVLLLLVVVRSASRMADVKTKLSKQLAGKTDEVYIATGKSRNRPTLAALVEADPTPDTHHRRARRR 536
            +DIAL+ P+++TMRASM T S+  PSC+YYNE+TGLWD +GL   A     D   +A    + VSC +FHLSDF ++  EV   FQ V L AG++V  + REI+  G+++ +  L+LL +V S SR+AD ++K +++L  +  + YI TG  +  PTL  +++   T +  H+  R++
Sbjct:  730 EDIALAGPVQLTMRASM-TSSAQLPSCSYYNEDTGLWDSEGLAIGAVAVLTDAADSA--VDVLVSCVTFHLSDFGVATTEVEPVFQPVTLGAGLSVV-RGREITAWGLVLTVGALILLGIVWSVSRIADHRSKTAERLQTRAYDHYIETGHPQRLPTLEDIMDLKQTLEKKHKTRRKK 903
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BLAST of mRNA_Ecto-sp13_S_contig12989.2452.1 vs. uniprot
Match: D7G398_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G398_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.860e-27
Identity = 75/178 (42.13%), Postives = 112/178 (62.92%), Query Frame = 3 
Query:    3 QDIALSAPIRMTMRASMATPSSNSPSCAYYNENTGLWDEDGLVTEAATTPMDEGHAAGLTGLNVSCWSFHLSDFTISADEVGSGFQHVELTAGIAVALKVREISKTGVLVLLFVLLLLVVVRSASRMADVKTKLSKQLAGKTDEVYIATGKSRNRPTLAALVEADPTPDTHHRRARRR 536
            +DIAL+ P+++TMRASM T S+  PSC+YYNE+TGLWD +GL   A     D   +A    + VSC +FHLSDF ++  EV   FQ V L AG++V  K REI+  G+++ +  L+LL VV S SR+AD ++K +++L  +  + YI TG  +  PTL  + +   T +  H+  R++
Sbjct: 1183 EDIALAGPVQLTMRASM-TSSAQLPSCSYYNEDTGLWDSEGLAIGAVAVLTDAADSA--VDVLVSCVTFHLSDFGVATTEVEPVFQPVTLGAGLSVV-KGREITVWGLVLTVGALILLGVVWSVSRIADHRSKTAERLQTRAYDHYIETGHPQRLPTLEDIKDLKQTLEKKHKTRRKK 1356
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BLAST of mRNA_Ecto-sp13_S_contig12989.2452.1 vs. uniprot
Match: D7FLQ3_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ3_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 6.860e-27
Identity = 72/178 (40.45%), Postives = 113/178 (63.48%), Query Frame = 3 
Query:    3 QDIALSAPIRMTMRASMATPSSNSPSCAYYNENTGLWDEDGLVTEAATTPMDEGHAAGLTGLNVSCWSFHLSDFTISADEVGSGFQHVELTAGIAVALKVREISKTGVLVLLFVLLLLVVVRSASRMADVKTKLSKQLAGKTDEVYIATGKSRNRPTLAALVEADPTPDTHHRRARRR 536
            +DIAL+ P+++TMRASM T S+  PSC+YYNE TGLWD +GL   A   P+D G +A    + VSC +FHLSDF ++  E+ + FQ     AG++V    R+++  G+++ +  L+LL +V S SR+AD ++K +++L  +  + YI TG  +  PTL  + +   T +  H+R R+R
Sbjct:  153 EDIALAGPVQLTMRASM-TSSALLPSCSYYNEETGLWDSEGLAIGAVAVPIDAGDSA--LDVLVSCVTFHLSDFGVATTEIETVFQP---GAGLSVV-SGRDMTVWGLVLTVGALILLGIVWSVSRIADYRSKTAEKLQTRAYDHYIETGHPQRLPTLEDIKDLKQTLERKHKRRRKR 323
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12989.2452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JLT2_9PHAE7.400e-9781.22GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4X3_ECTSI9.040e-9081.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3A1_ECTSI1.890e-2841.57GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3A0_ECTSI5.700e-2741.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G398_ECTSI5.860e-2742.13GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLQ3_ECTSI6.860e-2740.45GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12989contigEcto-sp13_S_contig12989:2445..3974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score285.4
Seed ortholog evalue2e-74
Seed eggNOG ortholog2880.D7G4X3
Model size651
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
Cds size603
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12989.2452.1prot_Ecto-sp13_S_contig12989.2452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12989 2461..3942 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462695.045242-UTR-Ecto-sp13_S_contig12989:2444..24601681462695.045242-UTR-Ecto-sp13_S_contig12989:2444..2460Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12989 2445..2460 -
1681462695.0856755-UTR-Ecto-sp13_S_contig12989:3942..39741681462695.0856755-UTR-Ecto-sp13_S_contig12989:3942..3974Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12989 3943..3974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462695.0543513-CDS-Ecto-sp13_S_contig12989:2460..24741681462695.0543513-CDS-Ecto-sp13_S_contig12989:2460..2474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12989 2461..2474 -
1681462695.0621898-CDS-Ecto-sp13_S_contig12989:2792..29581681462695.0621898-CDS-Ecto-sp13_S_contig12989:2792..2958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12989 2793..2958 -
1681462695.0700018-CDS-Ecto-sp13_S_contig12989:3129..33121681462695.0700018-CDS-Ecto-sp13_S_contig12989:3129..3312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12989 3130..3312 -
1681462695.0778098-CDS-Ecto-sp13_S_contig12989:3702..39421681462695.0778098-CDS-Ecto-sp13_S_contig12989:3702..3942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12989 3703..3942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12989.2452.1

>prot_Ecto-sp13_S_contig12989.2452.1 ID=prot_Ecto-sp13_S_contig12989.2452.1|Name=mRNA_Ecto-sp13_S_contig12989.2452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
MTMRASMATPSSNSPSCAYYNENTGLWDEDGLVTEAATTPMDEGHAAGLT
GLNVSCWSFHLSDFTISADEVGSGFQHVELTAGIAVALKVREISKTGVLV
LLFVLLLLVVVRSASRMADVKTKLSKQLAGKTDEVYIATGKSRNRPTLAA
LVEADPTPDTHHRRARRRSKRRAKTTFRQHMIKRWAGSKAHHQRKEDVEA
*
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mRNA from alignment at Ecto-sp13_S_contig12989:2445..3974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12989.2452.1 ID=mRNA_Ecto-sp13_S_contig12989.2452.1|Name=mRNA_Ecto-sp13_S_contig12989.2452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12989:2445..3974- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGATATTGCCCTCTCCGCACCGATTCGAATGACGATGAGGGCCTCA
ATGGCGACACCGTCGTCCAACAGCCCATCCTGCGCATATTACAATGAGAA
TACCGGGCTCTGGGACGAGGACGGGCTGGTGACCGAGGCCGCCACAACGC
CAATGGACGAAGGCCACGCGGCTGGACTAACGGGTTTGAACGTTTCCTGT
TGGTCGTTTCACTTGTCGGACTTCACAATATCTGCGGACGAAGTCGGCTC
GGGTTTTCAGCATGTGGAGTTGGTGAGAGCCTTAGCTAAACAGCTTTCAA
AATAATCCAGACGTACCAGCATTGCAAGTGCGGACTCATGGAGGTTCGGA
AATGGGCCCTCGAAGGGAACCCGCTCGAAGAGGAGCAGCGGTGGTGGAAG
AGCAGAGACAGAGGCTCTCGTCGACGTGGGCGTAGACTAGTGCAATTCCG
TCGACACGCTTCTTGAGCATGCCCAAACACGGAGGCAACACGCATGCATT
GCCGTTTTCCCTGGCGAGCCATGGTTGGTCTTCCCACTGCAATGTGTCAA
TAACCTCCGGAACACACTGTGTTCGAGTGCATATATTTAACTCGTCGATC
TGTTTGTTTGCCACTTTTTCTGCGAATTAACCTCCAAACGCTACCTTTTT
ATCACACTATAGACCGCGGGGATAGCCGTCGCTCTAAAGGTGCGGGAAAT
CTCCAAGACGGGTGTCCTGGTACTGCTTTTTGTCCTGCTCCTGCTCGTGG
TCGTCCGATCCGCCTCAAGAATGGCGGATGTCAAGACTAAGCTCAGCAAG
CAGTTGGCAGGGAAGACCGACGAGGTCTACATTGCCACCGGGAAGGTATG
GGAGTGATTGCTTGTACAATAACTGTTGTGCGTGGTTGCGGGTGAAGTTG
TACATGCGTTGGATGGCGTGATCTGTTGGGGCCGGCTCCGCAACTGATCT
TCCGCGTGACGAACGCTCTTCCCCGCATCCGACCGAAATGTGTCTCTTGA
ACGAACCCCTCGGTAGTCTCGGAATCGCCCTACCTTGGCAGCGTTGGTCG
AAGCGGACCCGACACCTGACACGCACCACCGCCGCGCGAGAAGGCGGTCG
AAAAGACGCGCCAAGACGACGTTTCGGCAGCACATGATAAAAAGGTGGGC
GGGGTCGAAAGCTCACCACCAGCGCAAGGAAGGTAATGTTCCTCAAACGG
TACGTCCACTCACGACACCATAGTTGGCGAAGATCAGCAAGACCGAACAC
GAAAGCCGAGGTCTTAGCCTTTGTGTTCTCGTCTATTTGCCAAGAGAAAA
GACATCGTAGGTGTTTGGAAGTATGTTTCTTGGTTCGGGATCGGTGTGGT
ATTCATGCCGGAACACCGACCCAAATTTGGGGCCAGCCATCTATGTTATC
AGTAGACATGCGGCAAGGGGACAATTTCGCCTCTCTTCACCGACGCGGTT
CCATGCGACGAGTCGTCTGAGACGTCCAGCATTTGCCTGCTGAACCACAG
ATGTCGAAGCTTAGCGCGCCGGATTCGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12989:2445..3974-

>mRNA_Ecto-sp13_S_contig12989.2452.1 ID=mRNA_Ecto-sp13_S_contig12989.2452.1|Name=mRNA_Ecto-sp13_S_contig12989.2452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12989:2445..3974- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGATGAGGGCCTCAATGGCGACACCGTCGTCCAACAGCCCATCCTG
CGCATATTACAATGAGAATACCGGGCTCTGGGACGAGGACGGGCTGGTGA
CCGAGGCCGCCACAACGCCAATGGACGAAGGCCACGCGGCTGGACTAACG
GGTTTGAACGTTTCCTGTTGGTCGTTTCACTTGTCGGACTTCACAATATC
TGCGGACGAAGTCGGCTCGGGTTTTCAGCATGTGGAGTTGACCGCGGGGA
TAGCCGTCGCTCTAAAGGTGCGGGAAATCTCCAAGACGGGTGTCCTGGTA
CTGCTTTTTGTCCTGCTCCTGCTCGTGGTCGTCCGATCCGCCTCAAGAAT
GGCGGATGTCAAGACTAAGCTCAGCAAGCAGTTGGCAGGGAAGACCGACG
AGGTCTACATTGCCACCGGGAAGTCTCGGAATCGCCCTACCTTGGCAGCG
TTGGTCGAAGCGGACCCGACACCTGACACGCACCACCGCCGCGCGAGAAG
GCGGTCGAAAAGACGCGCCAAGACGACGTTTCGGCAGCACATGATAAAAA
GGTGGGCGGGGTCGAAAGCTCACCACCAGCGCAAGGAAGATGTCGAAGCT
TAG
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