mRNA_Ecto-sp13_S_contig12987.2450.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12987.2450.1 vs. uniprot
Match: D8LCZ6_ECTSI (NYN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ6_ECTSI) HSP 1 Score: 720 bits (1859), Expect = 1.910e-254 Identity = 453/524 (86.45%), Postives = 462/524 (88.17%), Query Frame = 1
Query: 1 SRQPTGTFSELAFAVPLPAAARPPARSPAGGAWTSRSSDRAVSTTTTRGDLERSGVCPLALTRRGRADTTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRAAPARLEPLDAGSKGRRKGXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXAAMDPYPTGSAFVATPMTTTESDGGGADLKVDAVAPQAAAXXXXXA--RRPRSGSHTTNRRAGGVYTRGTARNRRGEGAKKQRYGDVSAKRAKALRTGGKAFLIVCDAESITSPELLESIDILDELGTRDVGVIYADWNKTLDWRSELFGRSKARDFQLLQREPLPLGSNPLADDTMTAEVLALARSEELKKHEFCLLSADGSLSELAAKLRGEGRVVRGVGRRQAPKEFVDNCDAFMYIDPANRYELLDNEGLVISVALCIALAAAGQERCDWVRMKTIVNSLHAWDLGLESPNYFGYSDYDEMVVKMDTYVTGVEDTSGEVVVKVPPKPKAGEVPRGLEDVATYLYTKWVSFTDEPRMNDILLACIP 1566
+RQPT FSELAFAVP PAA RP ARSPA GAWTSRSS+RAVSTTTT GD R GVCPLALTRRGRADTTATAXXXXXXXXXXXXXXXXXXXXXXXXX TRAAPARLEPLDAGSKGRRKG XXXXXXXXXXXXXXXXXXXX LSXXXXXX DPYP GSAFVATPM XXXXX RRPR+G+ RR GGVYTR TARNRRGEGAKKQRYGDVSAKRAKALRTGGKAFLIVCDAESITSPELLESIDILDELGTRDVGVIYADWNKT DWRSELFGRSKARDF+LLQREPLP GSNPL DDTMTAEVLALARSEEL K+EFCLLSADGSLSELAAKLRGEGR VRGVGRRQAP+EF+DNCD FMYIDPANRYELLDNEGLVISVALCIALAAAGQERCDWVRMKTIVNSLHAWDLGLESPNYFGYSDYDEMVVKMD YVTGVEDTSGEVVVKVPPKPKAGEVPRGLEDVATYLY KWVSFT+EPRMNDILLACIP
Sbjct: 32 TRQPTVAFSELAFAVPPPAAVRPLARSPACGAWTSRSSNRAVSTTTT-GDSPRIGVCPLALTRRGRADTTATAXXXXXXXXXXXXXXXXXXXXXXXXXEA--TRAAPARLEPLDAGSKGRRKGGRXXXXXXXXXXXXXXXXXXXXKGLSXXXXXXXXXDPYPAGSAFVATPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPRNGTPAPGRRTGGVYTRRTARNRRGEGAKKQRYGDVSAKRAKALRTGGKAFLIVCDAESITSPELLESIDILDELGTRDVGVIYADWNKTQDWRSELFGRSKARDFKLLQREPLPPGSNPLGDDTMTAEVLALARSEELNKYEFCLLSADGSLSELAAKLRGEGRAVRGVGRRQAPEEFLDNCDTFMYIDPANRYELLDNEGLVISVALCIALAAAGQERCDWVRMKTIVNSLHAWDLGLESPNYFGYSDYDEMVVKMDAYVTGVEDTSGEVVVKVPPKPKAGEVPRGLEDVATYLYAKWVSFTNEPRMNDILLACIP 552
BLAST of mRNA_Ecto-sp13_S_contig12987.2450.1 vs. uniprot
Match: UPI00082C3C3D (NYN domain-containing protein n=1 Tax=Moraxella oblonga TaxID=200413 RepID=UPI00082C3C3D) HSP 1 Score: 67.4 bits (163), Expect = 9.810e-9 Identity = 41/140 (29.29%), Postives = 70/140 (50.00%), Query Frame = 1
Query: 769 IVCDAESITSPELLESIDILDELGTRDVGVIYADWNKT--LDWRSELFGRSKARDFQLLQREPLPLGSNPLADDTMTAEVLALARSEELKKHEFCLLSADGSLSELAAKLRGEGRVVRGVGRRQAPKEFVDNCDAFMYID 1182
++ DA++ ++ L ++ + LG +V YADW K W+S L S Q +Q+ G N D ++ + + L + FCL+S+D + LA ++R EG +V G G++ PK F+ CD F Y++
Sbjct: 11 VLIDADNASTTHLEALLNEIATLGRSNVRRAYADWTKPQLASWKSVLLSHS----IQPIQQFSYTNGKNA-TDSSLIIDAMDLLYKGKFDG--FCLVSSDSDFTRLAQRIREEGLIVYGFGKKHTPKAFMQACDRFTYLE 143
BLAST of mRNA_Ecto-sp13_S_contig12987.2450.1 vs. uniprot
Match: A0A388SLX8_9DELT (Maebl n=2 Tax=Cupidesulfovibrio sp. HK-II TaxID=2009266 RepID=A0A388SLX8_9DELT) HSP 1 Score: 59.7 bits (143), Expect = 3.350e-6 Identity = 42/137 (30.66%), Postives = 64/137 (46.72%), Query Frame = 1
Query: 778 DAESITSPELLESIDILDELGTRDVGVIYADWNKT--LDWRSELFGRSKARDFQLLQREPLPLGSNPLADDTMTAEVLALARSEELKKHEFCLLSADGSLSELAAKLRGEGRVVRGVGRRQAPKEFVDNCDAFMYID 1182
+A+ +P LL I + G V +Y DW + W++ L S +Q+ G N D + + + L + FCL+S+D + LAA+LR EG VV G GRR P+ FV C F+Y++
Sbjct: 7 NAQPSATPNLLVEIA---KFGVACVRRVYGDWTQPNLTGWKALLHAHSLLP----VQQFQYTTGKNS-TDSALIIDAMDLMHTGRFDG--FCLVSSDSDFTRLAARLREEGLVVYGFGRRHTPEAFVKACTRFIYVE 133
BLAST of mRNA_Ecto-sp13_S_contig12987.2450.1 vs. uniprot
Match: G2HAF0_9DELT (HTH OST-type domain-containing protein n=2 Tax=Desulfovibrio sp. A2 TaxID=298701 RepID=G2HAF0_9DELT) HSP 1 Score: 55.8 bits (133), Expect = 5.950e-5 Identity = 35/110 (31.82%), Postives = 52/110 (47.27%), Query Frame = 1
Query: 859 IYADWNKT--LDWRSELFGRSKARDFQLLQREPLPLGSNPLADDTMTAEVLALARSEELKKHEFCLLSADGSLSELAAKLRGEGRVVRGVGRRQAPKEFVDNCDAFMYID 1182
+Y DW + W+ L S +Q+ G N D + + + L ++ FCL+S+D + LAA+LR EG VV G GRR P+ FV C F+Y +
Sbjct: 15 VYGDWTQPNLAGWKKLLHAHSLLP----VQQFQYTTGKNS-TDSALIIDAMDLMHTKRFDG--FCLVSSDSDFTRLAARLREEGLVVYGFGRRHTPEAFVKACTRFIYTE 117
BLAST of mRNA_Ecto-sp13_S_contig12987.2450.1 vs. uniprot
Match: A0A7S2V2S3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2S3_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 5.990e-5 Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1
Query: 1042 FCLLSADGSLSELAAKLRGEGRVVRGVGRRQAPKEFVDNCDAFMYID 1182
FCL+S+D + LA +LR EG++V GVGRR PK V C F+Y++
Sbjct: 154 FCLVSSDSDFTRLAMRLREEGKIVIGVGRRHTPKSLVQACSKFIYVE 200
BLAST of mRNA_Ecto-sp13_S_contig12987.2450.1 vs. uniprot
Match: A0A0D6ACX9_9CHRO (Maebl n=1 Tax=Geminocystis sp. NIES-3708 TaxID=1615909 RepID=A0A0D6ACX9_9CHRO) HSP 1 Score: 55.1 bits (131), Expect = 8.480e-5 Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = 1
Query: 793 TSPELLESI-DILDELGTRDVGVIYADW-NKTLD-WRSELFGRSKARDFQLL--QREPLPLGSNPLADDTMTAEVLALARSEELKKHEFCLLSADGSLSELAAKLRGEGRVVRGVGRRQAPKEFVDNCDAFMYID 1182
TS +++ES+ + + GT V IY DW N ++ W+ L DF +L Q+ G N D + + + L +++ FC++S+D + LA ++R G VV G G++ PK FV CD F+ D
Sbjct: 5 TSTKVMESLLREIAKFGTAYVKRIYGDWTNPQMNTWKKLL------NDFAVLPIQQFSYTTGKNS-TDTALIIDAMDLLYTDKFDG--FCIVSSDSDFTRLAHRIRQNGLVVYGFGKKTTPKAFVSACDRFICTD 130
BLAST of mRNA_Ecto-sp13_S_contig12987.2450.1 vs. uniprot
Match: A0A1M3BIW0_9HYPH (NYN domain-containing protein n=3 Tax=unclassified Shinella TaxID=2643062 RepID=A0A1M3BIW0_9HYPH) HSP 1 Score: 55.5 bits (132), Expect = 8.660e-5 Identity = 35/115 (30.43%), Postives = 57/115 (49.57%), Query Frame = 1
Query: 1042 FCLLSADGSLSELAAKLRGEGRVVRGVGRRQAPKEFVDNCDAFMYIDPANRYELLDNEGLVISVA-------------LCIALAAAGQERCDWVRMKTIVNSLHAWDLGLESPNY 1347
FC+ ++DG ++LA ++R EG+ V G+GR +A F + CDAF+ + G S A L A AAA + +WVR++ ++N+L A G + +Y
Sbjct: 97 FCIATSDGDFTQLAIRIRQEGKTVIGLGRERASLRFREACDAFVATEVVKAPPPAVTAGKKPSPAAKAPTPRKLEADLLHRAFAAAPRVDGEWVRLQDMLNALQACRPGFKVKSY 211 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12987.2450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12987.2450.1 >prot_Ecto-sp13_S_contig12987.2450.1 ID=prot_Ecto-sp13_S_contig12987.2450.1|Name=mRNA_Ecto-sp13_S_contig12987.2450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=386bp MDPYPTGSAFVATPMTTTESDGGGADLKVDAVAPQAAAAAPAAARRPRSGback to top mRNA from alignment at Ecto-sp13_S_contig12987:80..4701+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12987.2450.1 ID=mRNA_Ecto-sp13_S_contig12987.2450.1|Name=mRNA_Ecto-sp13_S_contig12987.2450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4622bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12987:80..4701+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12987:80..4701+ >mRNA_Ecto-sp13_S_contig12987.2450.1 ID=mRNA_Ecto-sp13_S_contig12987.2450.1|Name=mRNA_Ecto-sp13_S_contig12987.2450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12987:80..4701+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |