mRNA_Ecto-sp13_S_contig12985.2448.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Match: A0A6H5KX57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX57_9PHAE) HSP 1 Score: 149 bits (375), Expect = 4.840e-40 Identity = 74/80 (92.50%), Postives = 75/80 (93.75%), Query Frame = 1
Query: 1 PAKTLRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEVIKRLGPPALFLVPTCLLVDQQAEALGSWTRLSVAKYRGGAGL 240
PAKTLRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAE IKRLGPPALFLVPT L+VDQQAEALGSWT LSV KY GGAGL
Sbjct: 20 PAKTLRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEAIKRLGPPALFLVPTRLMVDQQAEALGSWTGLSVTKYMGGAGL 99
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Match: A0A6H5L3L3_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L3_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 9.790e-24 Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 1
Query: 1 PAKTLRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEVIKRLGPPALFLVPTCLLVDQQAEALGSWT-RLSVAKYRGG 231
P +TLR YQSRIA C DNT+VVLPTGSGKT++AAEVIK+ P ALFLVPT LV QQA+ L +WT R +A+ RGG
Sbjct: 44 PERTLRPYQSRIARACERDNTLVVLPTGSGKTIIAAEVIKQRPPRALFLVPTRHLVKQQAKVLRAWTFRRRIAQLRGG 121
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Match: A0A7S4V2U7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V2U7_9DINO) HSP 1 Score: 101 bits (252), Expect = 2.420e-23 Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 13 LRGYQSRIANKC-LHDNTIVVLPTGSGKTLLAAEVIKRLGPPALFLVPTCLLVDQQAEALGSWTRLSVAKYRGGAGL 240
LR YQSRI + NT+VVLPTG+GKTL+AAE+IKR+G LFLVPTCLLV+QQA+A+G WT+LSV +Y GGA L
Sbjct: 3 LRPYQSRIVGQAEASGNTVVVLPTGAGKTLIAAELIKRVGGTCLFLVPTCLLVEQQAKAVGKWTKLSVGEYMGGATL 79
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Match: A0A812RBN0_9DINO (DCL2A protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RBN0_9DINO) HSP 1 Score: 100 bits (249), Expect = 6.220e-23 Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 13 LRGYQSRIANKCLHD-NTIVVLPTGSGKTLLAAEVIKRLGPPALFLVPTCLLVDQQAEALGSWTRLSVAKYRGGAGL 240
LRGYQ RI + L NTIVVLPTG+GKTL+A+E++KRLGP LFLVPTCLLV+QQA+A+ WT L VA++ GGA +
Sbjct: 19 LRGYQQRIVDDALTTGNTIVVLPTGAGKTLIASELMKRLGPGCLFLVPTCLLVEQQAKAIREWTGLRVAEFMGGASM 95
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Match: A0A1Q9EU77_SYMMI (Endoribonuclease Dicer-like 2a n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EU77_SYMMI) HSP 1 Score: 99.4 bits (246), Expect = 1.580e-22 Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 13 LRGYQSRIANKCLHD-NTIVVLPTGSGKTLLAAEVIKRLGPPALFLVPTCLLVDQQAEALGSWTRLSVAKYRGGAGL 240
LR YQ+R+ + L NT+VVLPTG+GKTL+A+E+I+RLGPP LFLVPTCLLV+QQA+A+ WT L VA++ GG L
Sbjct: 3 LRAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSL 79
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Match: A0A812TEW1_9DINO (DCL2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TEW1_9DINO) HSP 1 Score: 99.4 bits (246), Expect = 1.640e-22 Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 13 LRGYQSRIANKCLHD-NTIVVLPTGSGKTLLAAEVIKRLGPPALFLVPTCLLVDQQAEALGSWTRLSVAKYRGGAGL 240
LR YQ+R+ + L NT+VVLPTG+GKTL+A+E+I+RLGPP LFLVPTCLLV+QQA+A+ WT L VA++ GG L
Sbjct: 3 LRAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSL 79
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Match: A0A2V3IZ19_9FLOR (Endoribonuclease Dicer-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ19_9FLOR) HSP 1 Score: 87.4 bits (215), Expect = 2.430e-18 Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1
Query: 1 PAKTLRG--YQSRIANKCLHDNTIVVLPTGSGKTLLAAEVIKRLGPPALFLVPTCLLVDQQAEALGSWTRLSVAKYRGGAGL 240
PA LR YQ RI ++ + NT+VVLPTG+GKTL+A EVI+ L PPALF+VPT LLV QQ+EA+ + T VA+ GG L
Sbjct: 8 PAARLRPRPYQQRIIDQAVLKNTLVVLPTGAGKTLIATEVIRTLSPPALFIVPTVLLVKQQSEAIAAHTNYKVAQLHGGKSL 89
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Match: A0A812IWI1_SYMPI (CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IWI1_SYMPI) HSP 1 Score: 80.5 bits (197), Expect = 7.090e-16 Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 19 GYQSRIANKC-LHDNTIVVLPTGSGKTLLAAEVIKRLGPPALFLVPTCLLVDQQAEALGSWTRLSVAKYRGG 231
GYQ RI + N IVVLPTG+GKTL+A+E+I LGPP L VPTC+LV+QQA A WT L VA++ GG
Sbjct: 1997 GYQERIVTEVRAAGNAIVVLPTGAGKTLIASELITGLGPPCL--VPTCMLVEQQARAAREWTGLQVAEFMGG 2066
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Match: A0A0L0FPA9_9EUKA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPA9_9EUKA) HSP 1 Score: 65.9 bits (159), Expect = 6.570e-12 Identity = 38/80 (47.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 7 KTLRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEVIKRL-----GPPALFLVPTCLLVDQQAEALGSWTRLSVAKYRGG 231
K LRGYQ RI + N+IVVLPTG+GKTL+A +I L LF+VPT L+DQQA + T L V GG
Sbjct: 16 KQLRGYQERIVAEASERNSIVVLPTGTGKTLIACALILHLMRTRSARKTLFIVPTIALMDQQAAVIARETGLGVITMGGG 95
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Match: A0A836C8Q2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q2_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.480e-11 Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 13 LRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEVI-----KRLGPPALFLVPTCLLVDQQAEALGSWTRLSVAKYRGG 231
LRGYQ RI N +VVLPTG+GKTL+AAE I K+ ALFLVPT LV QQA+ + T L VA+ +GG
Sbjct: 28 LRGYQERICMDMAKGNHLVVLPTGAGKTLVAAECIAAELWKQPTKRALFLVPTRNLVHQQAQVIEGETGLDVAELKGG 105 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12985.2448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12985.2448.1 >prot_Ecto-sp13_S_contig12985.2448.1 ID=prot_Ecto-sp13_S_contig12985.2448.1|Name=mRNA_Ecto-sp13_S_contig12985.2448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp PAKTLRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEVIKRLGPPALFLVback to top mRNA from alignment at Ecto-sp13_S_contig12985:567..806- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12985.2448.1 ID=mRNA_Ecto-sp13_S_contig12985.2448.1|Name=mRNA_Ecto-sp13_S_contig12985.2448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12985:567..806- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12985:567..806- >mRNA_Ecto-sp13_S_contig12985.2448.1 ID=mRNA_Ecto-sp13_S_contig12985.2448.1|Name=mRNA_Ecto-sp13_S_contig12985.2448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12985:567..806- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |