prot_Ecto-sp13_S_contig12984.2447.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12984.2447.1
Unique Nameprot_Ecto-sp13_S_contig12984.2447.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length148
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12984.2447.1 vs. uniprot
Match: D7G2R7_ECTSI (Protein RFT1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R7_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 4.370e-65
Identity = 125/146 (85.62%), Postives = 128/146 (87.67%), Query Frame = 0 
Query:    1 MLSAEASDTRQPRNSALEEYGAAAITLDLISSTALFLAREPFRVALARSKVPIADENTWVAGGNKGAASSGQQLTGEREXXXXXXXXXXEAYRRRFVNTAWISAPVGLAFAGLVRLAYPWVIRNDDFQGLEENRQVPCWMSSVGVI 146
            MLSA ASDTRQPRNSALEEYGAAAITLDLISSTALFLAREPFRVALARSKVPIADE TWVAGGNKG A  GQQLTGERE   XXXXXX EAYRRRFVNTAWISAPVGLAFAGLVRLAYPWVIRNDDFQG+EENRQ    +     +
Sbjct:   22 MLSAAASDTRQPRNSALEEYGAAAITLDLISSTALFLAREPFRVALARSKVPIADEKTWVAGGNKGVAP-GQQLTGERERARXXXXXX-EAYRRRFVNTAWISAPVGLAFAGLVRLAYPWVIRNDDFQGVEENRQAASLVCLAAAV 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12984.2447.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2R7_ECTSI4.370e-6585.62Protein RFT1 homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007594RFT1PFAMPF04506Rft-1coord: 20..122
e-value: 5.0E-9
score: 35.5
IPR007594RFT1PANTHERPTHR13117ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATEDcoord: 17..121
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..118
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 119..147
NoneNo IPR availableTMHMMTMhelixcoord: 96..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12984contigEcto-sp13_S_contig12984:239..682 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12984.2447.1mRNA_Ecto-sp13_S_contig12984.2447.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12984 194..894 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12984.2447.1 ID=prot_Ecto-sp13_S_contig12984.2447.1|Name=mRNA_Ecto-sp13_S_contig12984.2447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MLSAEASDTRQPRNSALEEYGAAAITLDLISSTALFLAREPFRVALARSK
VPIADENTWVAGGNKGAASSGQQLTGERERARRRRRRRREAYRRRFVNTA
WISAPVGLAFAGLVRLAYPWVIRNDDFQGLEENRQVPCWMSSVGVIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007594RFT1