mRNA_Ecto-sp13_S_contig12984.2447.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12984.2447.1
Unique NamemRNA_Ecto-sp13_S_contig12984.2447.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12984.2447.1 vs. uniprot
Match: D7G2R7_ECTSI (Protein RFT1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R7_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 1.600e-73
Identity = 140/150 (93.33%), Postives = 141/150 (94.00%), Query Frame = 1 
Query:    1 QRASTFVLNVLLQRAMLSAEASDTRQPRNSALEEYGAAAITLDLISSTALFLAREPFRVALARSKVPIADENTWVAGGNKGAASSGQQLTGEREXXXXXXXXXXEAYRRRFVNTAWISAPVGLAFAGLVRLAYPWVIRNDDFQGLEENRQ 450
            QRASTFVLNVLLQRAMLSA ASDTRQPRNSALEEYGAAAITLDLISSTALFLAREPFRVALARSKVPIADE TWVAGGNKG A  GQQLTGERE   XXXXXX EAYRRRFVNTAWISAPVGLAFAGLVRLAYPWVIRNDDFQG+EENRQ
Sbjct:    7 QRASTFVLNVLLQRAMLSAAASDTRQPRNSALEEYGAAAITLDLISSTALFLAREPFRVALARSKVPIADEKTWVAGGNKGVAP-GQQLTGERERARXXXXXX-EAYRRRFVNTAWISAPVGLAFAGLVRLAYPWVIRNDDFQGVEENRQ 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12984.2447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2R7_ECTSI1.600e-7393.33Protein RFT1 homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12984contigEcto-sp13_S_contig12984:194..894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score222.2
Seed ortholog evalue1.6e-55
Seed eggNOG ortholog2880.D7G2R7
Preferred nameRFT1
Model size701
KEGG koko:K02738,ko:K06316,ko:K11369
KEGG TC2.A.66.3
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006810,GO:0006869,GO:0008150,GO:0009987,GO:0010876,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0031224,GO:0031984,GO:0033036,GO:0034203,GO:0034204,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046836,GO:0051179,GO:0051234,GO:0061024,GO:0065007,GO:0065008,GO:0071702,GO:0071840,GO:0097035,GO:0098827,GO:1901264
Exons1
EggNOG free text desc.glycolipid translocation
EggNOG OGsKOG2864@1,KOG2864@2759
EC3.4.25.1
Cds size444
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03036,ko03051
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.7118075-UTR-Ecto-sp13_S_contig12984:193..2381681462694.7118075-UTR-Ecto-sp13_S_contig12984:193..238Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12984 194..238 +
1681462694.7341342-UTR-Ecto-sp13_S_contig12984:682..8941681462694.7341342-UTR-Ecto-sp13_S_contig12984:682..894Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12984 683..894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.7246966-CDS-Ecto-sp13_S_contig12984:238..6821681462694.7246966-CDS-Ecto-sp13_S_contig12984:238..682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12984 239..682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12984.2447.1prot_Ecto-sp13_S_contig12984.2447.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12984 239..682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12984.2447.1

>prot_Ecto-sp13_S_contig12984.2447.1 ID=prot_Ecto-sp13_S_contig12984.2447.1|Name=mRNA_Ecto-sp13_S_contig12984.2447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MLSAEASDTRQPRNSALEEYGAAAITLDLISSTALFLAREPFRVALARSK
VPIADENTWVAGGNKGAASSGQQLTGERERARRRRRRRREAYRRRFVNTA
WISAPVGLAFAGLVRLAYPWVIRNDDFQGLEENRQVPCWMSSVGVIS*
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mRNA from alignment at Ecto-sp13_S_contig12984:194..894+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12984.2447.1 ID=mRNA_Ecto-sp13_S_contig12984.2447.1|Name=mRNA_Ecto-sp13_S_contig12984.2447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12984:194..894+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGCGCGTCGACGTTCGTCCTGAACGTCCTGCTTCAGCGAGCGATGCT
CTCGGCGGAAGCCTCCGACACTCGCCAGCCTCGCAACTCCGCCCTCGAAG
AGTACGGAGCAGCGGCAATCACCCTCGACTTGATCTCCTCCACGGCTCTT
TTCCTCGCGAGAGAGCCGTTTCGAGTCGCCCTGGCGCGGTCGAAGGTGCC
AATCGCTGACGAAAATACGTGGGTGGCGGGGGGCAACAAAGGTGCCGCCT
CCTCGGGGCAGCAGCTGACGGGGGAAAGGGAGCGGGCGCGACGGCGGCGG
CGGCGGCGGCGAGAGGCGTACCGTCGGCGCTTTGTCAACACCGCTTGGAT
ATCCGCCCCGGTAGGGCTAGCGTTCGCGGGGCTCGTGCGGTTAGCGTACC
CGTGGGTTATCCGCAACGACGACTTCCAAGGCCTCGAAGAGAACCGGCAG
GTACCCTGTTGGATGAGTTCTGTTGGAGTCATTTCGTAGAACAACCCGTC
AACAGTGCGTGTGTCAATTTTGCCTTCGTCAGCAACCCGTGGAGGTCTGT
CTCTCCGAAGCATCTGGTTTTGCTATCCAGGGGCCTGCCCTGATGCAGCC
CGCTTAGTCTACTGTGCATTGAGTAGCGGCTACAAACCGGCCGTGCAACG
TTTCGCCGTTCCTTCGGAGAGAATTGGGCTTGAAGATGACTGGCCACGCC
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12984:194..894+

>mRNA_Ecto-sp13_S_contig12984.2447.1 ID=mRNA_Ecto-sp13_S_contig12984.2447.1|Name=mRNA_Ecto-sp13_S_contig12984.2447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12984:194..894+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTCGGCGGAAGCCTCCGACACTCGCCAGCCTCGCAACTCCGCCCT
CGAAGAGTACGGAGCAGCGGCAATCACCCTCGACTTGATCTCCTCCACGG
CTCTTTTCCTCGCGAGAGAGCCGTTTCGAGTCGCCCTGGCGCGGTCGAAG
GTGCCAATCGCTGACGAAAATACGTGGGTGGCGGGGGGCAACAAAGGTGC
CGCCTCCTCGGGGCAGCAGCTGACGGGGGAAAGGGAGCGGGCGCGACGGC
GGCGGCGGCGGCGGCGAGAGGCGTACCGTCGGCGCTTTGTCAACACCGCT
TGGATATCCGCCCCGGTAGGGCTAGCGTTCGCGGGGCTCGTGCGGTTAGC
GTACCCGTGGGTTATCCGCAACGACGACTTCCAAGGCCTCGAAGAGAACC
GGCAGGTACCCTGTTGGATGAGTTCTGTTGGAGTCATTTCGTAG
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