mRNA_Ecto-sp13_S_contig12976.2441.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12976.2441.1
Unique NamemRNA_Ecto-sp13_S_contig12976.2441.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12976.2441.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.550e-15
Identity = 56/65 (86.15%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:  232 MAEMREALAAMKASLDAANGQVRQVQAEKEDREAXXXXXXGEPT--SNGGGQTPAGDSLPAESAT 420
            MAEMREALAAMKASLDAANGQVRQ+QAEKEDREA XXXXX      S GGGQTPAGDSLPAESAT
Sbjct:    1 MAEMREALAAMKASLDAANGQVRQLQAEKEDREAAXXXXXXXXXXXSTGGGQTPAGDSLPAESAT 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12976.2441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE6.550e-1586.15Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12976contigEcto-sp13_S_contig12976:167..2474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size420
Hectar predicted targeting categoryother localisation
Exons2
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.2653458-CDS-Ecto-sp13_S_contig12976:166..5171681462694.2653458-CDS-Ecto-sp13_S_contig12976:166..517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12976 167..517 -
1681462694.2748115-CDS-Ecto-sp13_S_contig12976:2405..24741681462694.2748115-CDS-Ecto-sp13_S_contig12976:2405..2474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12976 2406..2474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12976.2441.1prot_Ecto-sp13_S_contig12976.2441.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12976 167..2474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12976.2441.1

>prot_Ecto-sp13_S_contig12976.2441.1 ID=prot_Ecto-sp13_S_contig12976.2441.1|Name=mRNA_Ecto-sp13_S_contig12976.2441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
SRRHQRGQRQGGATGRGGSPNSPMPPATRSRSGGTPAGRGRGRAAPRSTS
VTARRTPTRGRTRSAAPLRSSGASAADMAEMREALAAMKASLDAANGQVR
QVQAEKEDREAAAAAAAGEPTSNGGGQTPAGDSLPAESAT
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mRNA from alignment at Ecto-sp13_S_contig12976:167..2474-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12976.2441.1 ID=mRNA_Ecto-sp13_S_contig12976.2441.1|Name=mRNA_Ecto-sp13_S_contig12976.2441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12976:167..2474- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAGACGTCATCAACGGGGGCAGAGGCAGGGCGGGGCCACTGGACGCGG
CGGCAGCCCGAACTCACCGGTACGGTTATGATGCTTGTTGAGGGAGCGAT
AGGCGGGGAATGACGAAGCCTTGCTAAGATGATGGCTCACGACTAATGAT
GACGGGTCACGACGCCTTTTGTCGGGGTCCTTGTCTTTCTTGGGCGGTGC
CTACACTGCTGTGTACAAACACCGAGGGAGAGGAAAAACACAAAAAACAC
AGTTGTTGCGGCTTGGGTGGTGGTGTCGCAAGACGCACAACCACAAGGGT
ACTGGCTCGAATTGCAGCACGCCCGCGTACACGCGCATGGGATGCAATTT
GCCGCTGCGAGGTCCCAAATGTCCATCGCAGCTGTCGGTCTGTGACCGAA
GCGCAGTGCGCCGCCCACCCGCAGGATTAGCCATGCGCCACAACAATTTG
TGCAAAGAGTCACATACGAAAGGAGACACTGGTTCAAATTGCAGAGACAG
CGCGTACACGCGCAAGCGATGGAATTTGCCGCTGCGAAGCCGTAAACGTC
CATCGCAGCTGTCGGTCCTTGACCGAAGCGCAGCAGCACCTCCCTAGGTA
TCGCCGCTGAATAGTGTTTTCGCATACGTGTACAGCTATGTACAGCAACC
CAGTGTATGCGACAAATATTGCCGCCAAGCACACGGGCTCGCAACCGCTT
GGCTGTTGACAATAGTCGAAGAGCAGCGGGGCTGATACGGTTACCACCAG
AATACGAGCTACTAATTCAAACGTGCACACGAGTGCCGTTTACCGCTGTG
GTGCGCATTATCACCACAGCTGTCGGCCATGGGCTGAGCAGCAGTAGCAG
AGGACGTATGTAGTGCCGCTGAACGATTTGTTTTTTGCGAATAAGACAAT
TTTGCCGCCAAGCACAAGCGGGATTGCCACCCCGCTTGGCTGTCGACAGC
AGCAGCAGTCGAAGAGCAGCGGGGCTATTACGATTGCAACTAGACATTGC
GGAGCTACTGATTCCAACGTACACATAAGTGTCGTTGGCCGCCGTGGTGT
GCATAATCGCCACGGCCGTCGGCCATGGGCTGAGCAGCAGTAGCACAGAA
TACGATGCGCGCCGTTGAACAAAAAGGGTTGTTGCATGCATTTGTAATTG
GTATCAGAGTGGTCCCAACCATTTCAGTTGGACCGGTCATAAATCCACGG
ATCTCGGAAAATTGTTTTTTTTCACGTACGTACTGCCCGTGACGGCACCC
ACCAGACACGGTGACGGACAATGAAAAAATTGTAAGATCAACGAATACTA
ACGAAGAGAAAAAAATCTAGTACAAAATACAAAATAACGAAAAAACAAAA
CGACCATCGAGGCCATGCGAGATTTGAACTCGTGATCTCTGATACCATCT
TGCCACGACAACATGCGGACTACCAGTCGGCCGCTACGACGTTTCAGATC
TACATGAAACCCACGCCTCGATATGGAGGTAATTGTTACGATCGTTCCAT
TGCAATCGTTTATCAATTCATTTACTCCTTGAGTCATGGGTCCTGGATAG
GGTCGTTGCACCAGCTGCAGCTGGGAATCGCGCTAGGTCACCGTCGTGTC
ATGCATTACCGCGGGAGTGTGCACGCCATATGACCAAGCTGTGATGCCGA
AAGCCAGCACCCCAAGCTGTTTCTGAAAGAGCATTACGCACCCCACTCAA
CCCAGACACGGCCTGCACAGGCAGCCGCATTCTCCCGAAAGGGAAATCAA
CCAAAGAGGCCCGCGGTCCACATACACGGAGTTACTTTTTTTTGGGACCA
CACTAGCCACGAAGTTTTCCATTGCGATGCACACATCGACGTGATTCCGC
AACGGTCGGCGCTCGCCAAGCAGCAGGAGCGACCGCCCAAGACTACACTT
TCAACTCGTTGTGTTGTCTTCGTCCTTTTCGCCGTGGTGTGTCGGGACAC
ACAACAGATGCCACCCGCGACGAGGTCTAGGTCTGGTGGGACGCCGGCGG
GGCGGGGTCGGGGGCGCGCTGCTCCTCGATCCACCAGTGTTACGGCACGA
CGAACGCCGACTCGGGGTCGGACGCGATCGGCGGCGCCGCTACGTAGCAG
CGGGGCGAGCGCCGCCGACATGGCCGAAATGCGCGAAGCGTTGGCGGCAA
TGAAAGCAAGCTTGGACGCTGCGAATGGTCAGGTTCGCCAGGTACAGGCG
GAAAAGGAAGATCGCGAGGCGGCGGCGGCGGCGGCGGCTGGTGAGCCGAC
ATCGAACGGGGGCGGGCAAACACCGGCCGGAGACTCGCTGCCGGCCGAGA
GTGCGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12976:167..2474-

>mRNA_Ecto-sp13_S_contig12976.2441.1 ID=mRNA_Ecto-sp13_S_contig12976.2441.1|Name=mRNA_Ecto-sp13_S_contig12976.2441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12976:167..2474- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAGACGTCATCAACGGGGGCAGAGGCAGGGCGGGGCCACTGGACGCGG
CGGCAGCCCGAACTCACCGATGCCACCCGCGACGAGGTCTAGGTCTGGTG
GGACGCCGGCGGGGCGGGGTCGGGGGCGCGCTGCTCCTCGATCCACCAGT
GTTACGGCACGACGAACGCCGACTCGGGGTCGGACGCGATCGGCGGCGCC
GCTACGTAGCAGCGGGGCGAGCGCCGCCGACATGGCCGAAATGCGCGAAG
CGTTGGCGGCAATGAAAGCAAGCTTGGACGCTGCGAATGGTCAGGTTCGC
CAGGTACAGGCGGAAAAGGAAGATCGCGAGGCGGCGGCGGCGGCGGCGGC
TGGTGAGCCGACATCGAACGGGGGCGGGCAAACACCGGCCGGAGACTCGC
TGCCGGCCGAGAGTGCGACG
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