mRNA_Ecto-sp13_S_contig12971.2440.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12971.2440.1
Unique NamemRNA_Ecto-sp13_S_contig12971.2440.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12971.2440.1 vs. uniprot
Match: D7FYF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF0_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 2.880e-69
Identity = 198/230 (86.09%), Postives = 200/230 (86.96%), Query Frame = 2 
Query:   11 MQPGQKLQPPGGR-QSRXXXXXXAPGPARLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQGEVASRILERQRLRLEERGGEASGAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SAPESDGETLARAGGGGDQEGPPGARVRGRTRLRPPG-GEIGALTASARSTALGGSGGVVRCRPSPAGASRGLNAAREVFRSSDGRAGRAAGGR 685
            MQPGQK+QPP GR Q R      APGPARLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQGEVA+RILERQRLRLE RG EASGAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      SAP SDGETLARAGGGGDQEG PGA VRGRTRLRP G G IGA TASA STALGGSGGVVRCR SPAGASRGLNAAREVFR S G  GRAAGGR
Sbjct:    1 MQPGQKMQPPSGRRQLRPGPEAPAPGPARLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQGEVATRILERQRLRLEGRGDEASGAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEGRQSAPGSDGETLARAGGGGDQEGTPGAGVRGRTRLRPSGVGGIGATTASATSTALGGSGGVVRCRSSPAGASRGLNAAREVFRGSGGSVGRAAGGR 230
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BLAST of mRNA_Ecto-sp13_S_contig12971.2440.1 vs. uniprot
Match: A0A6H5KA79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA79_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 1.570e-58
Identity = 149/242 (61.57%), Postives = 152/242 (62.81%), Query Frame = 2 
Query:   11 MQPGQKLQPPGGRQSRXXXXXXAPGPARLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQGEVASRILERQRLRLEERGGEASGAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPESDGETLARAGGGGDQEGPPGARVRGRTRLRPPGGEIGALTASARSTALGGSGGVVRCRPSPAGASRGLNAAREVFRSSDGRAGRAAGGRTASGGGVAGAMAAEVQQ 736
            MQPGQK++P G RQSR      APGP RLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQ           RLRLE RGGE         XXXXXX                                      SAP SDGETLARA GGGDQEG PGA VRGR RLRP G  IGALTAS+RSTALGGSGGVVRCR SPAG SRGLNA RE FRSS G A RAAGG      GVAGAMAAE QQ
Sbjct:    1 MQPGQKMKPSGRRQSRPGPEAPAPGPVRLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQ-----------RLRLEGRGGELGHGAACEEXXXXXXDDEAEGRQ------------------------------SAPGSDGETLARASGGGDQEGVPGAGVRGRARLRPTGRRIGALTASSRSTALGGSGGVVRCRSSPAGTSRGLNADREAFRSSGGSARRAAGG------GVAGAMAAETQQ 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12971.2440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYF0_ECTSI2.880e-6986.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA79_9PHAE1.570e-5861.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12971contigEcto-sp13_S_contig12971:2820..4061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size736
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003810.1
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.2118363-CDS-Ecto-sp13_S_contig12971:2819..33711681462694.2118363-CDS-Ecto-sp13_S_contig12971:2819..3371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12971 2820..3371 -
1681462694.2227955-CDS-Ecto-sp13_S_contig12971:3877..40511681462694.2227955-CDS-Ecto-sp13_S_contig12971:3877..4051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12971 3878..4051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.2321851-UTR-Ecto-sp13_S_contig12971:4051..40611681462694.2321851-UTR-Ecto-sp13_S_contig12971:4051..4061Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12971 4052..4061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12971.2440.1prot_Ecto-sp13_S_contig12971.2440.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12971 2820..4051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12971.2440.1

>prot_Ecto-sp13_S_contig12971.2440.1 ID=prot_Ecto-sp13_S_contig12971.2440.1|Name=mRNA_Ecto-sp13_S_contig12971.2440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MQPGQKLQPPGGRQSRPGPEARAPGPARLGAAVDAIVGHLRRLVLLQAWA
KWQPKLTQGEVASRILERQRLRLEERGGEASGAEPPTAAAAAGRRWRRAG
GQSRRAGGKLRDGPAGEEEEEDDGDDEAEGQQSAPESDGETLARAGGGGD
QEGPPGARVRGRTRLRPPGGEIGALTASARSTALGGSGGVVRCRPSPAGA
SRGLNAAREVFRSSDGRAGRAAGGRTASGGGVAGAMAAEVQQ
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mRNA from alignment at Ecto-sp13_S_contig12971:2820..4061-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12971.2440.1 ID=mRNA_Ecto-sp13_S_contig12971.2440.1|Name=mRNA_Ecto-sp13_S_contig12971.2440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12971:2820..4061- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCAGCAAAATGCAGCCGGGGCAAAAACTGCAGCCGCCCGGGGGGAGAC
AATCGCGGCCGGGGCCGGAAGCACGCGCTCCCGGCCCTGCGCGCCTCGGG
GCCGCGGTGGACGCCATCGTGGGACATCTGCGCAGGCTGGTGCTTCTGCA
GGCGTGGGCTAAGTGGCAACCCAAGCTGACCCAGGTGAGGAGTCGCAGCC
AGCCCCGTGTCTGGCAGTCGCCGCCCGTCTTCCCTTGCCTTGGTTTTGGT
TGCTTGTCCCCCTGGGCTACAGCAAGTTGTGTATCGAACGCGACTCTAGT
CTGTCATGCATGATACATGTCTTGGCGAACGGCGAGACATATGTGCGGAG
CCTGCGCAATCTAACCAGCTCTCGTGAGGCACATGCCGCGTTTCGGACCC
AACCGCCGTGCGGGGACTCGTGTAGTACGAACCAAAGAAACGCCAAGACT
CAGAAGATTTTTTGCACGGGGAACAGGGGACTTCGTTCAGTTCCGCACAG
CAGTGCTCGATGAAAGGGCACACACCCACTCGTTTGACCCCAACAAAAAC
AGCGAGCTTATCTCTTCCAACTTCCTTCCGCGCAACGTTGCTGTTTCCCC
ACTTGAAACGTCGGGTAACCCCGTGGATGTATGTTGTTTTTCTGGGTGGC
TGCCTTCCTTACCCTGTCCCACGCCCCGTCGCCCGCCCAGGGCGAGGTCG
CCTCCAGGATACTGGAACGGCAGCGCTTGAGACTCGAAGAGAGGGGCGGC
GAAGCCTCCGGCGCAGAACCTCCTACCGCCGCCGCTGCCGCCGGGCGTCG
GTGGCGGCGAGCGGGGGGGCAGTCACGCAGGGCCGGCGGCAAGCTCAGAG
ACGGACCCGCCGGCGAGGAGGAGGAGGAAGATGACGGCGACGACGAAGCC
GAAGGCCAGCAGAGTGCGCCGGAGTCCGATGGCGAGACGCTAGCTCGTGC
CGGCGGCGGCGGAGACCAAGAGGGACCGCCTGGTGCCCGAGTACGAGGGC
GGACACGCTTGCGGCCGCCAGGGGGGGAGATTGGAGCGCTGACGGCGTCT
GCTAGGAGTACAGCTCTCGGGGGGAGTGGGGGCGTCGTGAGGTGTCGTCC
CTCGCCGGCAGGAGCCAGCAGGGGCCTGAACGCTGCTCGCGAGGTTTTTC
GAAGTAGCGATGGCAGAGCGGGGCGGGCCGCCGGCGGGAGGACAGCTTCT
GGCGGTGGCGTGGCGGGAGCGATGGCGGCGGAGGTGCAGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12971:2820..4061-

>mRNA_Ecto-sp13_S_contig12971.2440.1 ID=mRNA_Ecto-sp13_S_contig12971.2440.1|Name=mRNA_Ecto-sp13_S_contig12971.2440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12971:2820..4061- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCCGGGGCAAAAACTGCAGCCGCCCGGGGGGAGACAATCGCGGCC
GGGGCCGGAAGCACGCGCTCCCGGCCCTGCGCGCCTCGGGGCCGCGGTGG
ACGCCATCGTGGGACATCTGCGCAGGCTGGTGCTTCTGCAGGCGTGGGCT
AAGTGGCAACCCAAGCTGACCCAGGGCGAGGTCGCCTCCAGGATACTGGA
ACGGCAGCGCTTGAGACTCGAAGAGAGGGGCGGCGAAGCCTCCGGCGCAG
AACCTCCTACCGCCGCCGCTGCCGCCGGGCGTCGGTGGCGGCGAGCGGGG
GGGCAGTCACGCAGGGCCGGCGGCAAGCTCAGAGACGGACCCGCCGGCGA
GGAGGAGGAGGAAGATGACGGCGACGACGAAGCCGAAGGCCAGCAGAGTG
CGCCGGAGTCCGATGGCGAGACGCTAGCTCGTGCCGGCGGCGGCGGAGAC
CAAGAGGGACCGCCTGGTGCCCGAGTACGAGGGCGGACACGCTTGCGGCC
GCCAGGGGGGGAGATTGGAGCGCTGACGGCGTCTGCTAGGAGTACAGCTC
TCGGGGGGAGTGGGGGCGTCGTGAGGTGTCGTCCCTCGCCGGCAGGAGCC
AGCAGGGGCCTGAACGCTGCTCGCGAGGTTTTTCGAAGTAGCGATGGCAG
AGCGGGGCGGGCCGCCGGCGGGAGGACAGCTTCTGGCGGTGGCGTGGCGG
GAGCGATGGCGGCGGAGGTGCAGCAA
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