mRNA_Ecto-sp13_S_contig12968.2439.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12968.2439.1 vs. uniprot
Match: D7G815_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G815_ECTSI) HSP 1 Score: 644 bits (1661), Expect = 2.450e-227 Identity = 331/351 (94.30%), Postives = 337/351 (96.01%), Query Frame = 1
Query: 1 QAVLEAGKLASPACEEASWDQLHDTAVADLSRRGRGFSVQDSFLGEEWVSPLLEDSARFQAAGKLHPLGLEPEHGEMAWVEPDNLEFGFPALHELVVNLHALAFELNLKDPKLGLRRAFQGSTMLLRLTEGCRVPVRLDSVAGGAETGHKISAVYFIGRKGGGDAHKSQQALSEEGDAINAGGQLRLQNMETNAPLAEGIVGGSSGNASPLEGNPPQEREQVNTSTLDGSRNTDVNGGGSAPDELGFTGPRGGKGGEESTVGQGAVVVLEPTADRLVMFRSDCVSTQTLEVLGHEREQYAMLFWMHGARGGAGDVAGGDGGGGLATEAEDLSSSSQFEDGGEEKDGSEGTG 1053
QAV+EAGK+ASP CEEASWDQLHDT VADLSRRGR FSVQDSFLGEEWVSPLLEDSARFQAAGKLHPLGLEPEHGEMAWVEPDNLEFGFPALHELVVNLHALAFELNLKDPKLGLRRAFQGSTMLLRLTEGCRVPVRLDSVAGGAETGHKISAVYF+GRKGG DA KSQQALSEEGDAINAGGQLRL+NMETNAPLAEGIVGGSSGNASPLEGNPPQ RE+VNTSTLDGSRNTDVNGGGSAPD LGF GPRGGKGGEESTVGQGAVV LEPTADRLVMFRSDCVSTQTLEVLGHEREQYAMLFWMHGARGGAGDVAGGDGGGGL TEAEDLS SSQ EDGGEEKD +GTG
Sbjct: 332 QAVIEAGKVASPVCEEASWDQLHDTTVADLSRRGRRFSVQDSFLGEEWVSPLLEDSARFQAAGKLHPLGLEPEHGEMAWVEPDNLEFGFPALHELVVNLHALAFELNLKDPKLGLRRAFQGSTMLLRLTEGCRVPVRLDSVAGGAETGHKISAVYFVGRKGGSDADKSQQALSEEGDAINAGGQLRLKNMETNAPLAEGIVGGSSGNASPLEGNPPQGREEVNTSTLDGSRNTDVNGGGSAPDGLGFAGPRGGKGGEESTVGQGAVVELEPTADRLVMFRSDCVSTQTLEVLGHEREQYAMLFWMHGARGGAGDVAGGDGGGGLKTEAEDLSPSSQREDGGEEKDVGKGTG 682
BLAST of mRNA_Ecto-sp13_S_contig12968.2439.1 vs. uniprot
Match: A0A6H5KHU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU1_9PHAE) HSP 1 Score: 628 bits (1619), Expect = 4.790e-226 Identity = 327/352 (92.90%), Postives = 337/352 (95.74%), Query Frame = 1
Query: 1 QAVLEAGKLASPACEEASWDQLHDTAVADLSRRGRGFSVQDSFLGEEWVSPLLEDSARFQAAGKLHPLGLEPEHGEMAWVEPDNLEFGFPALHELVVNLHALAFELNLKDPKLGLRRAFQGSTMLLRLTEGCRVPVRLDSVAGGAETGHKISAVYFIGRKGGGDAHKSQQALSEEGDAINAGGQLRLQNMETNAPLAEGIVGGSSGNASPLEGNPPQEREQVNTSTLDGSRNTDVNGGGSAPDELGFTGPRGGKGGEESTVGQGAVVVLEPTADRLVMFRSDCVSTQTLEVLGHEREQYAMLFWMHGARGGAGDVAGGDGGGGLATEAEDLSSSSQFEDGGEEKDGSEGTGS 1056
QAV+EAGKLASPACEEASWDQLHDT VADLSRRGR FSVQDSFLGEEWVSPLLEDSARFQAAGKLHPLGLEPEHGEMAWVEPDN+EFGFPALHELVVNLHALAFELNLKDP+L LRRAFQGSTMLLRLTEGCRVPVRLDSVAGGAETGHKISAVYFIGRKGGGDA KSQQALSEEGDAINAGGQLRLQNMETNAPLAE IVG SSG+ASPLEGNPPQERE+VNTST DGSRNTDV GGGSAPDELGFTGPRGGKGGEEST+GQGAVVVLEPTADRLVMFRSDCVST+TLEVLGHEREQYAMLFWMHGA GGAGDVAG DGGGGL T+AEDLSSSSQ E G EE+DGS+G GS
Sbjct: 4 QAVVEAGKLASPACEEASWDQLHDTTVADLSRRGRRFSVQDSFLGEEWVSPLLEDSARFQAAGKLHPLGLEPEHGEMAWVEPDNVEFGFPALHELVVNLHALAFELNLKDPELRLRRAFQGSTMLLRLTEGCRVPVRLDSVAGGAETGHKISAVYFIGRKGGGDADKSQQALSEEGDAINAGGQLRLQNMETNAPLAEDIVGSSSGDASPLEGNPPQEREEVNTSTSDGSRNTDVIGGGSAPDELGFTGPRGGKGGEESTMGQGAVVVLEPTADRLVMFRSDCVSTETLEVLGHEREQYAMLFWMHGASGGAGDVAG-DGGGGLKTDAEDLSSSSQGEVGVEERDGSKGAGS 354
BLAST of mRNA_Ecto-sp13_S_contig12968.2439.1 vs. uniprot
Match: A0A835Z026_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z026_9STRA) HSP 1 Score: 127 bits (319), Expect = 9.140e-29 Identity = 105/329 (31.91%), Postives = 135/329 (41.03%), Query Frame = 1
Query: 28 ASPACEEASWDQLHDTAVADLSR---RGRGFSVQDSFLGEEWVSPLLEDSARFQAAGKLHPLGLEPEHGEMAWVEPDNLEFGFPALHELVVNLHALAFELNLKDPKLGLRRAFQGSTMLLRLTEGCRVPVRLDSVAGGAETGHK-------------------------ISAVYFIGRKGGGDAHKSQQALSEEGDAINAGGQLRLQNMETNAPLAEGIVGGSSGNASPLEGNPPQEREQVNTSTLDGSRNTDVNGGGSAPDELGFTGPRGGKGGEESTVGQGAVVVLEPTADRLVMFRSDCVSTQTLEVLGHEREQYAMLFWMHGARG 930
ASP +EA+WDQL AV L+R + G +V D +LG EW + D R AAG+L G MAWVEP L +PALHELV+ LHAL FELN K P L L RA GSTM+ RL G V RLDSV G TG K I+A+YF+G E+ GG++RL + P G G G++S A V+EP DRL++FRS+ V + V + + ++FW+HGA G
Sbjct: 364 ASPDQDEATWDQLTLPAVEGLARMSGKAGGVAVVDGYLGGEWPKLVAGDCRRMLAAGRL---GAGGGAEAMAWVEPAELAQAYPALHELVIALHALPFELNAKAPALALARALPGSTMVSRLPRGGDVGRRLDSVISGQRTGFKGQLQHESADRGCVEGAGSAAVAAFKITAIYFVG---------------EDEWLPGMGGEVRLMHQAVVEPRKSAAADGDGG-------------------------------------------------GDDS-----APTVVEPRPDRLLLFRSEGVWNERAAV--EAEDMWTVVFWLHGAAG 618
BLAST of mRNA_Ecto-sp13_S_contig12968.2439.1 vs. uniprot
Match: A0A7S3Y2I6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2I6_HETAK) HSP 1 Score: 115 bits (287), Expect = 1.050e-25 Identity = 74/173 (42.77%), Postives = 96/173 (55.49%), Query Frame = 1
Query: 79 VADLSRRGRGFSVQDSFLGEEWVSPLLEDSARFQAAGKLHPLGL-----EPEHGEMAWVEPDNLEFGFPALHELVVNLHALAFELNLKD-PKLGLRRAFQGSTMLLRLTEGCRVPVRLDSVAGGAETGHKISAVYFIGRKG--GGDAHKSQQALSEEGDAINA---GGQLRLQ 564
+ADL R RG +VQD FLGEEW+ L+ED+ R A G+L P+ + E +G++A+VEP LE GFPAL ELV NLHAL FEL + L GST ++ + GC P RLD G TG+ + +YF GGD S + L+EE + GG L LQ
Sbjct: 82 LADL--RARGVAVQDEFLGEEWLPLLVEDTKRLVATGQLTPVPVPERAKEGVYGDIAFVEPSQLEEGFPALAELVKNLHALPFELQRNSVSQTPLASPLPGSTAIIEMRNGCSQPKRLDCGEGADFTGYFYTCIYFFSSSAVAGGDPVSSHEKLTEEDGKESTRIDGGSLILQ 252
BLAST of mRNA_Ecto-sp13_S_contig12968.2439.1 vs. uniprot
Match: A0A329RR12_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A329RR12_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 4.800e-13 Identity = 56/171 (32.75%), Postives = 80/171 (46.78%), Query Frame = 1
Query: 25 LASPACEEASWDQLHDTAVADL---SRRGRGFSVQDSFLGEEWVSPLLEDSARFQAAGKL----------HPLGLEPEHGE--------MAWVEPDNLEFGFPALHELVVNLHALAFELNLKDP-KLGLRRAFQGSTMLLRLTEGCRVPVRLDSVAGGAETGHKISAVYFI 471
LA P + A+WDQL D + +L RG +V D F+GEEW LL D R G L + L + + + +VE + +PA+ EL+ LHAL +E+N+K P K L F T + +L G P+RLD G + G K++ VYF
Sbjct: 321 LADPNSDFATWDQLDDKFLDELFVEKSDVRGVAVMDEFMGEEWTQLLLNDVFRMAKNGLLMSTVPNVDGKYVLSRQNADNQTESLPGAKLRFVEHQDCTAEYPAIAELIEKLHALPYEINMKQPEKAKLCAQFVHCTAIHQLPPGHHQPLRLDCGVGDKDNGFKLTCVYFF 491
BLAST of mRNA_Ecto-sp13_S_contig12968.2439.1 vs. uniprot
Match: A0A7S3MGN2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGN2_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.060e-9 Identity = 56/169 (33.14%), Postives = 78/169 (46.15%), Query Frame = 1
Query: 25 LASPACEEASWDQLHDTAVADLSRRGRGFSVQDSFLGEEWVSPLLEDSARFQAAGK---LHPLGLEPEHGE-----------MAWVEPDN-LEFGFPALHELVVNLHALAFELNLKDP---KLGLRRAFQGSTMLLRLTEGCRVPVRLDSVAGGAE--TGHKISAVYFI 471
+A P +A DQL + V+ L + VQ FLG+EW + D R+ K L+P G G+ M W+EP L + AL EL+ +HAL FELNLK +L L +G TMLL G R+DS G++ +G +I+ Y I
Sbjct: 178 VALPTAPQAQLDQLDEDVVSGLFGDVK-VVVQREFLGDEWTPLIRNDIVRYMRNEKMSVLNPDGAVKVEGKGSSVVPAHLTRMCWIEPSKTLSENYAALAELITQVHALPFELNLKGKDVSELSLLEPSKGCTMLLHYPHGSSQMSRIDSRDDGSDLDSGIRITCSYAI 345 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12968.2439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12968.2439.1 >prot_Ecto-sp13_S_contig12968.2439.1 ID=prot_Ecto-sp13_S_contig12968.2439.1|Name=mRNA_Ecto-sp13_S_contig12968.2439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=353bp QAVLEAGKLASPACEEASWDQLHDTAVADLSRRGRGFSVQDSFLGEEWVSback to top mRNA from alignment at Ecto-sp13_S_contig12968:208..2040+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12968.2439.1 ID=mRNA_Ecto-sp13_S_contig12968.2439.1|Name=mRNA_Ecto-sp13_S_contig12968.2439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1833bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12968:208..2040+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12968:208..2040+ >mRNA_Ecto-sp13_S_contig12968.2439.1 ID=mRNA_Ecto-sp13_S_contig12968.2439.1|Name=mRNA_Ecto-sp13_S_contig12968.2439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12968:208..2040+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |