prot_Ecto-sp13_S_contig12966.2438.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12966.2438.1
Unique Nameprot_Ecto-sp13_S_contig12966.2438.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length423
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12966.2438.1 vs. uniprot
Match: D7FNA1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA1_ECTSI)

HSP 1 Score: 613 bits (1582), Expect = 2.730e-215
Identity = 351/414 (84.78%), Postives = 360/414 (86.96%), Query Frame = 0 
Query:   10 FSAHQGATSKNGGXXXXELGGPAAGPPVNQGRPIKNWRVSKEAASLLACHGKKNKAVKGAEAYSVAHCLEVPPPASGYTRGASARDRSKQPPETVEGEVSAVERRCVTGEGRVDKDLLLSELLVELHRRVKLLVGLQRQKRNQQRRTRVEPLMPLMPRQAAAPAPAPASPEEVAE-GEGDELYGLEALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIANNNRASSRDSLTQLADHLLDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVHIAAQNGAREV 422
            F +H  ATS  GG    ELG PA GPPVNQGRP KNWRVSKEAASLLAC G KNKA KGAEAYSVAHCLEVP P+SG  RG S     KQ PETV G+VSA+E+RC+TGEGRVDKDLLLSELLVELHRRVKLLVGLQRQKRNQQRRTRVEPL                      E GEGDELYGLEALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQ+KFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIA N++ SSRDSL QLADHLLDGMSKTLIYPSAPTVK LVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIV IAAQNGAREV
Sbjct:  106 FVSHLDATSNIGGGGGGELGAPAVGPPVNQGRPTKNWRVSKEAASLLACQGNKNKAAKGAEAYSVAHCLEVPSPSSGDARGVS-----KQTPETVGGKVSALEQRCLTGEGRVDKDLLLSELLVELHRRVKLLVGLQRQKRNQQRRTRVEPLXXXXXXXXXXXXXXXXXXXMAEEEGEGDELYGLEALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQKKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIAKNHQVSSRDSLAQLADHLLDGMSKTLIYPSAPTVKTLVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVRIAAQNGAREV 514
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BLAST of mRNA_Ecto-sp13_S_contig12966.2438.1 vs. uniprot
Match: A0A6H5JYJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ8_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 3.530e-101
Identity = 151/157 (96.18%), Postives = 155/157 (98.73%), Query Frame = 0 
Query:  266 MEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIANNNRASSRDSLTQLADHLLDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVHIAAQNGAREV 422
            MEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLW+HM+WHSIRPKESFLLDLIEGIANN+ ASSR+SLTQLADHLLDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVHIAAQNGAR V
Sbjct:   18 MEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWQHMKWHSIRPKESFLLDLIEGIANNHHASSRNSLTQLADHLLDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVHIAAQNGARAV 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12966.2438.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA1_ECTSI2.730e-21584.78PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYJ8_9PHAE3.530e-10196.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 226..336
e-value: 9.7E-12
score: 44.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 192..414
e-value: 2.7E-26
score: 94.7
NoneNo IPR availablePANTHERPTHR13547UNCHARACTERIZEDcoord: 194..417
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 245..279
score: 6.369
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 210..244
score: 9.109
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 285..319
score: 7.728

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12966contigEcto-sp13_S_contig12966:479..4493 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12966.2438.1mRNA_Ecto-sp13_S_contig12966.2438.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12966 479..4493 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12966.2438.1 ID=prot_Ecto-sp13_S_contig12966.2438.1|Name=mRNA_Ecto-sp13_S_contig12966.2438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=423bp
MSSYPPTLSFSAHQGATSKNGGGGGGELGGPAAGPPVNQGRPIKNWRVSK
EAASLLACHGKKNKAVKGAEAYSVAHCLEVPPPASGYTRGASARDRSKQP
PETVEGEVSAVERRCVTGEGRVDKDLLLSELLVELHRRVKLLVGLQRQKR
NQQRRTRVEPLMPLMPRQAAAPAPAPASPEEVAEGEGDELYGLEALEFFK
RIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLPSESCAT
MVIRLRVQRGKLAEAMEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRG
EMDGVMQLWKHMEWHSIRPKESFLLDLIEGIANNNRASSRDSLTQLADHL
LDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTP
EDRARMRSSIVHIAAQNGAREVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat