mRNA_Ecto-sp13_S_contig12966.2438.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12966.2438.1
Unique NamemRNA_Ecto-sp13_S_contig12966.2438.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12966.2438.1 vs. uniprot
Match: D7FNA1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA1_ECTSI)

HSP 1 Score: 613 bits (1582), Expect = 2.730e-215
Identity = 351/414 (84.78%), Postives = 360/414 (86.96%), Query Frame = 1 
Query:   28 FSAHQGATSKNGGXXXXELGGPAAGPPVNQGRPIKNWRVSKEAASLLACHGKKNKAVKGAEAYSVAHCLEVPPPASGYTRGASARDRSKQPPETVEGEVSAVERRCVTGEGRVDKDLLLSELLVELHRRVKLLVGLQRQKRNQQRRTRVEPLMPLMPRQAAAPAPAPASPEEVAE-GEGDELYGLEALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIANNNRASSRDSLTQLADHLLDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVHIAAQNGAREV 1266
            F +H  ATS  GG    ELG PA GPPVNQGRP KNWRVSKEAASLLAC G KNKA KGAEAYSVAHCLEVP P+SG  RG S     KQ PETV G+VSA+E+RC+TGEGRVDKDLLLSELLVELHRRVKLLVGLQRQKRNQQRRTRVEPL                      E GEGDELYGLEALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQ+KFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIA N++ SSRDSL QLADHLLDGMSKTLIYPSAPTVK LVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIV IAAQNGAREV
Sbjct:  106 FVSHLDATSNIGGGGGGELGAPAVGPPVNQGRPTKNWRVSKEAASLLACQGNKNKAAKGAEAYSVAHCLEVPSPSSGDARGVS-----KQTPETVGGKVSALEQRCLTGEGRVDKDLLLSELLVELHRRVKLLVGLQRQKRNQQRRTRVEPLXXXXXXXXXXXXXXXXXXXMAEEEGEGDELYGLEALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQKKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIAKNHQVSSRDSLAQLADHLLDGMSKTLIYPSAPTVKTLVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVRIAAQNGAREV 514
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BLAST of mRNA_Ecto-sp13_S_contig12966.2438.1 vs. uniprot
Match: A0A6H5JYJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ8_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 3.530e-101
Identity = 151/157 (96.18%), Postives = 155/157 (98.73%), Query Frame = 1 
Query:  796 MEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIANNNRASSRDSLTQLADHLLDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVHIAAQNGAREV 1266
            MEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLW+HM+WHSIRPKESFLLDLIEGIANN+ ASSR+SLTQLADHLLDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVHIAAQNGAR V
Sbjct:   18 MEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWQHMKWHSIRPKESFLLDLIEGIANNHHASSRNSLTQLADHLLDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVHIAAQNGARAV 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12966.2438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA1_ECTSI2.730e-21584.78PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYJ8_9PHAE3.530e-10196.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12966contigEcto-sp13_S_contig12966:479..4493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score621.3
Seed ortholog evalue3.3e-175
Seed eggNOG ortholog2880.D7FNA1
Model size1269
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
Ec32 ortholog descriptionZc3h12a-like Ribonuclease NYN domain protein
Ec32 orthologEc-15_003520.1
Cds size1269
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12966.2438.1prot_Ecto-sp13_S_contig12966.2438.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12966 479..4493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.0686712-CDS-Ecto-sp13_S_contig12966:478..6341681462694.0686712-CDS-Ecto-sp13_S_contig12966:478..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12966 479..634 -
1681462694.081279-CDS-Ecto-sp13_S_contig12966:1008..11611681462694.081279-CDS-Ecto-sp13_S_contig12966:1008..1161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12966 1009..1161 -
1681462694.0895493-CDS-Ecto-sp13_S_contig12966:1565..17511681462694.0895493-CDS-Ecto-sp13_S_contig12966:1565..1751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12966 1566..1751 -
1681462694.1001859-CDS-Ecto-sp13_S_contig12966:2742..29411681462694.1001859-CDS-Ecto-sp13_S_contig12966:2742..2941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12966 2743..2941 -
1681462694.1152112-CDS-Ecto-sp13_S_contig12966:3476..37601681462694.1152112-CDS-Ecto-sp13_S_contig12966:3476..3760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12966 3477..3760 -
1681462694.124941-CDS-Ecto-sp13_S_contig12966:4202..44931681462694.124941-CDS-Ecto-sp13_S_contig12966:4202..4493Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12966 4203..4493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12966.2438.1

>prot_Ecto-sp13_S_contig12966.2438.1 ID=prot_Ecto-sp13_S_contig12966.2438.1|Name=mRNA_Ecto-sp13_S_contig12966.2438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=423bp
MSSYPPTLSFSAHQGATSKNGGGGGGELGGPAAGPPVNQGRPIKNWRVSK
EAASLLACHGKKNKAVKGAEAYSVAHCLEVPPPASGYTRGASARDRSKQP
PETVEGEVSAVERRCVTGEGRVDKDLLLSELLVELHRRVKLLVGLQRQKR
NQQRRTRVEPLMPLMPRQAAAPAPAPASPEEVAEGEGDELYGLEALEFFK
RIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLPSESCAT
MVIRLRVQRGKLAEAMEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRG
EMDGVMQLWKHMEWHSIRPKESFLLDLIEGIANNNRASSRDSLTQLADHL
LDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTP
EDRARMRSSIVHIAAQNGAREVR
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mRNA from alignment at Ecto-sp13_S_contig12966:479..4493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12966.2438.1 ID=mRNA_Ecto-sp13_S_contig12966.2438.1|Name=mRNA_Ecto-sp13_S_contig12966.2438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4015bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12966:479..4493- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATCGTATCCTCCAACCCTGTCGTTCTCGGCCCATCAGGGCGCTAC
GTCCAAAAACGGAGGGGGGGGGGGGGGCGAGTTAGGGGGCCCTGCCGCTG
GGCCACCGGTGAACCAGGGCCGTCCCATCAAGAACTGGAGGGTCAGCAAG
GAAGCCGCAAGTCTTCTCGCTTGCCATGGAAAAAAGAACAAGGCGGTGAA
AGGGGCGGAGGCTTACTCGGTGGCGCATTGCCTCGAGGTTCCGCCGCCTG
CTTCGGGCTACACGCGGGGCGCTTCTGCAAGGGATCGATCGGTTCGGCGT
TTGGGTAGTGCTTTTCGCTTATTTTTTGTCGAAAGGAATTCCTACGGTAT
TTTACAAGGAGCTTGCGTTGTTCGAAGGAAGGAGCACACGGCTGATGATT
TGTCTTGGACATGTTAGCTGGGATAACGCAGGAGAAGCGAAATCACCATT
GCGCATTTAACGTGCACATCGCTAGGATAAGACAAGCGAAGAGTGTATGT
GCCCCCTTTAGTGATGCAGATAGGATGTAGATGAGATACGAAAAGTTGTT
TTGCGCCACCTCTGGCAAGGTGGAAAAGAGACGACTGGCCATCGTTCTCG
TGGGGAAAACGCTCCATCCTTCCTCTCGCTGACGCGCGGTAAAAACGGTC
GAACTAAGGCATGCAAAACATGAACAACCACCTACCTTAACCGTCCCCCC
TCCCCACCCCCCCCCCCAAAACCGCGAACGCAGAAGCAACCCCCCGAAAC
GGTAGAGGGAGAGGTCTCCGCCGTCGAGCGGAGGTGCGTAACCGGTGAGG
GCCGGGTGGACAAGGACCTGCTGCTTTCCGAGCTGCTGGTAGAGCTCCAC
CGAAGGGTCAAACTCTTGGTGGGGCTTCAGCGCCAGAAGAGAAACCAGCA
GCGACGGACTAGGGTCGAGCCGCTGATGCCGCTGATGCCGCGGCAAGCGG
CGGCGCCGGCGCCGGCGCCGGCGAGTCCAGAGGAGGTGGCCGAGGGGGAG
GGGGACGAGCTATACGGGTGAGTGGGGTGCGAAGGGGTTGTACTAGCGTT
CGGTTCCGGTTTTTGAAGGCTTAGCTGGGGGGTGGAGATAGCCAGTAGGA
CGGCGCACAGATCACGAACACCGGCAGCAGTGAGCAGTAACGTACTAAAT
ATCGGTAGCAGTAACGCCCACCGTCGCCAACGACAATACCACTGCCATGG
TAATTTAAGGACATTCATATGTTTTTCTGTGGGTGAGTCCTTCAGTTCGG
AGTTTCCCTAAGTTTGTTCCTGCCCAACGTTTTTTTCGTCTACGGTGAGC
CATGCGTTGGAAAATTACGGTGGCGGCCCTTGGGGAGAATGAATTGATTG
ATTTTGAACGCACCGAAAACATCCAACGAAAAACTAGAGCAGGTCGCTGG
AAGCGCTTGATATCTTGGAGTGCTTCCGCCAAGCGTACCCGCCGCGTCCT
TGGCAAACCCCGCCATCATCGTCATTCTGCGGGGCCCCATCTCCCGGAAT
AATTGTGTCCTCAAAAGCGGGGACGAATACTTGCAACAATAATCTTGCGC
AGGTTGGAAGCGCTGGAGTTCTTCAAGCGCATCCGCAGCCTGGGCGCGTA
CCCGCCGCCGACCCTGTGCAGCCTCTTGGTGCAGCTCCTGGCGGCCGAGG
GTATGCTGGAGGAGGCGGAGGAGCAGTTCGCCGACATGCTCAAGTACGGC
ATGCTCCCCTCGGAGTCTTGCGCGACCATGGTCATCCGTCTTCGCGTACA
GGTGAATCCCCCCCCCCCCCTTCACTTCGCGCTTAGTGATGTGGTAGCGT
GGGCCGGCGAAGAACCCGGCACGTCGCTCCGTCCCGGCGTTGTCGGGATG
CGAAGTCAATGATCTACCTAGGGACTACACGATGTGTTTGCATGAGTACA
CCCCTGTCCCCCGTTCTTCCTTCCTCCTGTTCATAAGTACATAAATATGA
CCCATGGTGTGTCTGGGCGTGATGATTTTCTGTATCTTCGCGTACAGCGG
ACCCCAAGCAACCATGACGTTGTAGCGTGCAGGTGACTCTATCCAACCAT
GGTCATATTTTCTGTCTTGCTGGTGGTGGTTATCTGTCTTGGCGTACACG
TGACCCCGAGCATGTCATGATGACTCTCTGTCCTAGCATCATGCACATGG
CCCCGAGCAACCATGACGGTGAGCTTTCGTAAGCGTGGGAGGGTTAGACC
CCAAGCTACCACCATGGTTACCCGTTTGAGCGCAACTAACCCCAAGCGAA
CCATGTTAATTAGTCTCTTGGCTCACAAGCCCATCCCCAAGGAAAACAAC
GGCAATTTTCTGTCCATGGCGCAAAGTGGCCCCAAGCAACCCCTATGGTT
TTCCGTCTTTGCGTACCGGTTACCCCACACGCGACTCACCCGGACACCTA
CGAACACTTTTGGAGCGCGCAGCACGTGTGGTGTCATCGTTCCTTGGCTA
GCTTCTGTTCATTGGTCGTCGGACCCAGCGAGACAACAGCAACGAAACCG
CAATTTGTGAGAAGATAGTTTTTAGTTCCTCCCTTTCTCACTCCACCGCC
TCCCGGCTTTCGAAAATCCGTCGTTGTTGGCCGTATATTTTGTTCGATAC
TGTAGCAGACAAAAACCTGGCGTAAGCGTTAGGCCGACGGAGACTTGCGC
ATTGGCAGGGGAACGGAGAACTGACAACACATACGCGCCGTTGTCTGTTT
CAAACCGACACAATGTTTATGGGGGCTGGACTGGACCGATAGAGAGGGAA
GCTGGCGGAGGCGATGGAGGTCTTGGCCATGATGGAGGGGAGGGAGTACC
AGCAGAAGTTCTGTCGCCCCCGCTTCCGTTCGTACCAACCGGTCATCTGC
GAGCTCTTGCGAAGAGGGGAGATGGACGGGGTGATGCAGCTGTGGAAGCA
CATGGAGTGGCACAGCATCCGCCCCAAGGTGATGCAAAGGAAATGATCCA
GCGTGGTGCAGCCCACTGTTAGGATCATACCATATACTACCACGCATGTT
GTGTGTGTTTTTCGTTCGTCCCAAAGATTATTGTTGTTTATTACTTCATA
AAAGGATATGCCAGCAGGTGTTTATTTGTTCATGTTCGGTGACGGAAGCC
GTCCTTGCTTCGTTCTTCGGAGCATGCTGTATTTTTCTTTTTCCGTTTTC
TGCGTTTTTTGTTCGTTTGTTTGGTGCAGAGGCCGTTCTGATCGTACTTC
GAAGTACATTCCCTTCACCAGTTGCCACGTTTTTTTACTTTTTTAATGTT
CCAGGAGTCGTGTTGTTGCTCCATACTTGATTGCGTTGGCCTTTGTTCCT
CGTCTTCGTTATTTTTTGTTTTTGGGCGGCAGGAGTCATTCTTGCTGGAC
CTCATCGAGGGGATCGCGAACAACAACCGCGCCTCTTCCAGAGACTCCCT
CACGCAACTCGCGGACCACCTCCTGGACGGGATGTCCAAGACGCTCATCT
ACCCCTCCGCACCAACCGTCAAGGCTCTTGTAGAGGTATGCACGATAACC
GCGTTCCGTACAGGTCGCTGCTCTGGTTGTGAGAGCTGCACCCCCCGTCT
TACCTACCTCCTGAACCGTTTTCCCTGGTGCTTGTAATAGGATTGGGGGG
CGGGGAGGGTAGGCCGCCGTGCCCCATGTCTGGTGCATGTTTTCCGTCGC
CGCCCTCTTTTGGCTCGACTAGTCATCTTGCAAGCCCCGCATTTTCAAGT
ATTCCTCTTCACGTGATGATGGCGTAGGGGTGGAACACGAAGTGCACGGA
CGTGTCGCAGCAGCGTACAATGCACCACGTGCGGCGAGATGCTCCACTGC
ACGAGGCTGACCCCGCCCCCCCGATTTCTACCATTATGCCTAACGTGATG
ATGGCTTAGGGGTGGAACGCGAAGTGGACGGACGTATCGGAGCAGGGAAC
ATGCACCACATGCGGCGAGATGCTCCAGGGCACGAGGCTCACCCCGGAGG
ACCGAGCGAGGATGAGGAGTTCGATCGTGCACATCGCCGCGCAGAATGGG
GCGAGAGAGGTGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12966:479..4493-

>mRNA_Ecto-sp13_S_contig12966.2438.1 ID=mRNA_Ecto-sp13_S_contig12966.2438.1|Name=mRNA_Ecto-sp13_S_contig12966.2438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1269bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12966:479..4493- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATCGTATCCTCCAACCCTGTCGTTCTCGGCCCATCAGGGCGCTAC
GTCCAAAAACGGAGGGGGGGGGGGGGGCGAGTTAGGGGGCCCTGCCGCTG
GGCCACCGGTGAACCAGGGCCGTCCCATCAAGAACTGGAGGGTCAGCAAG
GAAGCCGCAAGTCTTCTCGCTTGCCATGGAAAAAAGAACAAGGCGGTGAA
AGGGGCGGAGGCTTACTCGGTGGCGCATTGCCTCGAGGTTCCGCCGCCTG
CTTCGGGCTACACGCGGGGCGCTTCTGCAAGGGATCGATCGAAGCAACCC
CCCGAAACGGTAGAGGGAGAGGTCTCCGCCGTCGAGCGGAGGTGCGTAAC
CGGTGAGGGCCGGGTGGACAAGGACCTGCTGCTTTCCGAGCTGCTGGTAG
AGCTCCACCGAAGGGTCAAACTCTTGGTGGGGCTTCAGCGCCAGAAGAGA
AACCAGCAGCGACGGACTAGGGTCGAGCCGCTGATGCCGCTGATGCCGCG
GCAAGCGGCGGCGCCGGCGCCGGCGCCGGCGAGTCCAGAGGAGGTGGCCG
AGGGGGAGGGGGACGAGCTATACGGGTTGGAAGCGCTGGAGTTCTTCAAG
CGCATCCGCAGCCTGGGCGCGTACCCGCCGCCGACCCTGTGCAGCCTCTT
GGTGCAGCTCCTGGCGGCCGAGGGTATGCTGGAGGAGGCGGAGGAGCAGT
TCGCCGACATGCTCAAGTACGGCATGCTCCCCTCGGAGTCTTGCGCGACC
ATGGTCATCCGTCTTCGCGTACAGAGAGGGAAGCTGGCGGAGGCGATGGA
GGTCTTGGCCATGATGGAGGGGAGGGAGTACCAGCAGAAGTTCTGTCGCC
CCCGCTTCCGTTCGTACCAACCGGTCATCTGCGAGCTCTTGCGAAGAGGG
GAGATGGACGGGGTGATGCAGCTGTGGAAGCACATGGAGTGGCACAGCAT
CCGCCCCAAGGAGTCATTCTTGCTGGACCTCATCGAGGGGATCGCGAACA
ACAACCGCGCCTCTTCCAGAGACTCCCTCACGCAACTCGCGGACCACCTC
CTGGACGGGATGTCCAAGACGCTCATCTACCCCTCCGCACCAACCGTCAA
GGCTCTTGTAGAGGGGTGGAACGCGAAGTGGACGGACGTATCGGAGCAGG
GAACATGCACCACATGCGGCGAGATGCTCCAGGGCACGAGGCTCACCCCG
GAGGACCGAGCGAGGATGAGGAGTTCGATCGTGCACATCGCCGCGCAGAA
TGGGGCGAGAGAGGTGCGA
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