mRNA_Ecto-sp13_S_contig12965.2437.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12965.2437.1
Unique NamemRNA_Ecto-sp13_S_contig12965.2437.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12965.2437.1 vs. uniprot
Match: D8LIV9_ECTSI (Novel protein containing a T-complex protein 11 domain (Zgc:73347) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV9_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 2.010e-85
Identity = 179/248 (72.18%), Postives = 180/248 (72.58%), Query Frame = 3 
Query:   15 MEEAKAAAA-PETNQEDEAQEESASNVLRRLSSPIFGTAGFNSDSEGNDHSDGDFSTTKESRGDGEGSDDEEETERKEGAAEVVQRWWRECRRASKRIGAVVAARPAFVRIQQLFDKLDAGQMSFERTGLALQNPDIQRAVTKALGTVPRDDALLAMPKASRSTRAVLSSLMIVYHPGEVLTAEGDXXXXXXXXXXXXXXXXXXXXXXXSPTRLGSTEEPTPVEGVAATKKKLDPVAAALRNASALLL 755
            MEEAKAAAA PETNQEDE QEESASNVLRRLSSPIFG AGFNSDSE                            ERKEGAAE+VQRWWRECRRASKR  AVVAARPAFVRIQQLFDKLDAGQMSFERTGLALQNPDIQRAVTKAL  VPRDDALLAMPKASRSTRAVLSSLMIVYHPGEVLTAEGD                                EPTPVEGVAA KKKLDPVAAALRNASALLL
Sbjct:    1 MEEAKAAAAAPETNQEDETQEESASNVLRRLSSPIFGAAGFNSDSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXERKEGAAELVQRWWRECRRASKRTRAVVAARPAFVRIQQLFDKLDAGQMSFERTGLALQNPDIQRAVTKALSAVPRDDALLAMPKASRSTRAVLSSLMIVYHPGEVLTAEGDDEE-------------------------SGDAEPTPVEGVAA-KKKLDPVAAALRNASALLL 222
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BLAST of mRNA_Ecto-sp13_S_contig12965.2437.1 vs. uniprot
Match: A0A6H5L8M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M3_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 8.370e-43
Identity = 90/121 (74.38%), Postives = 97/121 (80.17%), Query Frame = 3 
Query:    3 GSPSMEEAKAAAAPETNQEDEAQEESASNVLRRLSSPIFGTAGFNSDSEGNDHSDGDFSTTKESRGDGEGSDDEEETERKEGAAEVVQRWWRECRRASKRIGAVVAARPAFVRIQQLFDKL 365
            GSPSM+EAKAAAAPETNQEDEAQEESASNVLRRLSSPIFG AGFNSDS+ ++HSDGDF+  +ESRGD                  VVQRWWRECRRASKR  AVVAARPAFVRIQQLFDK+
Sbjct:   14 GSPSMKEAKAAAAPETNQEDEAQEESASNVLRRLSSPIFGAAGFNSDSKDSNHSDGDFNINEESRGDXXXXXXXXXXXXXXXXXXVVQRWWRECRRASKRTRAVVAARPAFVRIQQLFDKV 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12965.2437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIV9_ECTSI2.010e-8572.18Novel protein containing a T-complex protein 11 do... [more]
A0A6H5L8M3_9PHAE8.370e-4374.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12965contigEcto-sp13_S_contig12965:728..4473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score283.9
Seed ortholog evalue7.3e-74
Seed eggNOG ortholog2880.D8LIV9
Model size757
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of sperm capacitation
EggNOG OGsKOG1981@1,KOG1981@2759
Cds size741
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12965.2437.1prot_Ecto-sp13_S_contig12965.2437.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12965 728..4459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462693.9650488-CDS-Ecto-sp13_S_contig12965:727..8911681462693.9650488-CDS-Ecto-sp13_S_contig12965:727..891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12965 728..891 -
1681462693.976684-CDS-Ecto-sp13_S_contig12965:1305..14001681462693.976684-CDS-Ecto-sp13_S_contig12965:1305..1400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12965 1306..1400 -
1681462693.987351-CDS-Ecto-sp13_S_contig12965:2273..24071681462693.987351-CDS-Ecto-sp13_S_contig12965:2273..2407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12965 2274..2407 -
1681462694.001229-CDS-Ecto-sp13_S_contig12965:2856..31881681462694.001229-CDS-Ecto-sp13_S_contig12965:2856..3188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12965 2857..3188 -
1681462694.0172708-CDS-Ecto-sp13_S_contig12965:4443..44591681462694.0172708-CDS-Ecto-sp13_S_contig12965:4443..4459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12965 4444..4459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.030793-UTR-Ecto-sp13_S_contig12965:4459..44731681462694.030793-UTR-Ecto-sp13_S_contig12965:4459..4473Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12965 4460..4473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12965.2437.1

>prot_Ecto-sp13_S_contig12965.2437.1 ID=prot_Ecto-sp13_S_contig12965.2437.1|Name=mRNA_Ecto-sp13_S_contig12965.2437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
MEEAKAAAAPETNQEDEAQEESASNVLRRLSSPIFGTAGFNSDSEGNDHS
DGDFSTTKESRGDGEGSDDEEETERKEGAAEVVQRWWRECRRASKRIGAV
VAARPAFVRIQQLFDKLDAGQMSFERTGLALQNPDIQRAVTKALGTVPRD
DALLAMPKASRSTRAVLSSLMIVYHPGEVLTAEGDDDDGGGSGAAAAATT
ASSSTTPPSPTRLGSTEEPTPVEGVAATKKKLDPVAAALRNASALLL
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mRNA from alignment at Ecto-sp13_S_contig12965:728..4473-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12965.2437.1 ID=mRNA_Ecto-sp13_S_contig12965.2437.1|Name=mRNA_Ecto-sp13_S_contig12965.2437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12965:728..4473- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAAGTCCATCTATGGAGGAAGCGAAAGGTGACTGCTAAACATTCGGT
TGTCTTCGCGTCATTGTCCACGGCAGTGTAGGACAGAGATGGACGCACAA
CACCGCCCCTACGCACTGCACCAGCCACGAGCCGAGGTTATCCACACAAG
CTCCTCCTACCCATGAGGTTCAATATCAGTGGGCTGATGTAAAAAGCCGA
AGGAAGATCTTGGTTCACCGCTTCCAATATCCCGCTGCTTCTTCCCGTTG
AAACTTGGATGACAGCTGAACCTGTTCTCGCGTGGATCCAACCCTATACA
TGGCCGCAGCAGTTTGGTCGATAGAAGTGCTGTTGTGTGAAGGAGACCCA
CGACAGAGCCAAGGTAGCTTTCAGTTACCGCGATCGATGTCGAGAGCCTA
TTCGGTCGCGTGCTTCGCCCGTCATTGAAAATTTGGACACGCACAATGAG
CAGTTGCGGATATTTCAACGGTTTTTTGGTTTTCTTGAACATGGCCAAGC
GGCAGAGGGGAGAGCAGTTTCGGGAGAGAGAAAGGGGTAAAGTCACACAC
CAAATGACCATGCCAGAATTAATTTTTTCGAGAGGAGAAATTTGGTGATG
TGCGCGAGCAGTGCTGCTGCTGTGTAGCATCTAGAACTTTGCTGGCGCTG
TATGCTACACGTTGGTGAATGCTAGAAAACGGGAAGAATTCTGAGTGTGT
GCATACTTGCATGCACAAGCAAGGGACTTTCTTCACCAACCATGCGAACG
AAACACCACAAAACACTCTGCGTGGACACTTGCAGGCACACCCGAATCGG
GGTTTTACGGAACTTGTATCCTAACCCCCCCAAGCGTATGGTTGGGGGGG
AGTAGAGTGACTGTAGTCTAGAGGACTTATCACACATCGTCATACCAGGT
AGGTGTCATCGGCCAGGACGTTTCTTGCACGAGCTCTGCGGTAGGTAGGT
CAATAGCAACCATATCGCGGCCAGAGCGATGCCCGTCAACCCGTTTGTCG
CCTGGTACCGCCTGTCCGTCGGTTTCAGTACGCTTTCCGCAGTCCGGCCT
TGATTTCGTTGCCACCAGCAAGGGAATGCTGATCATCACACCCACCGCAA
AACACCACGGGGCACAACTACCACCACCAACGAACAGCAGCAGAAGCAGA
ACAACCACCACAACAACATCGAGGAGATAAAGCGTAGTCTGAACGGTCCC
GAGCAAGGTCTTCAGGCCCTCTCACGCGCTCGAACGCATCCAATTCCACA
ATCATAACGCCATTCACAACCACCCACGCCAGCAGCAGCCGCCGCCCCGG
AAACAAACCAAGAAGACGAGGCCCAGGAAGAGAGCGCTTCCAACGTTCTC
CGGAGATTGTCCTCCCCGATCTTCGGCACGGCCGGCTTCAACTCGGACAG
CGAGGGCAACGACCACAGCGACGGTGATTTCAGCACCACCAAGGAGTCGA
GGGGTGATGGCGAGGGTAGCGATGACGAGGAGGAGACGGAGCGCAAGGAA
GGCGCCGCCGAGGTGGTTCAGCGGTGGTGGCGGGAGTGCCGGCGCGCGTC
GAAGCGCATTGGGGCTGTGGTTGCGGCGAGACCTGCGTTCGTTCGAATCC
AGCAGCTCTTTGATAAGGTGCGGTGGTGGCGTAGGGGGGGGGGCAGGGGA
GCGTGTTCCCCGTCGTTGTCGGCTCGAGTGTCTCTGTGCCGCTCATCTCA
ACCTAGAGAACAAAAGCCGTGGAGATGGACAGTGCATGTGCTGTAGCACG
ATGGGAGTGTGGGAGGGGAAGGCGAGGCGTATTAACTTATTATGGTTGAT
CGTATATCTTTGTTTCGCAAATCTCAACCGAGATAGCAAAATACTGGAGA
ACGACAGGCAGTGCATCCCCCCGCGGTCAATTTCGCCGAGCCCTCATCAT
CAGGAAGAGGTAGCCAATCAACGTCTTCAGACGTCTTGTGTGAACACGCC
CAAAAGCTCTCGGGCGCCTCCCCTCCAGGCCGTACTTCTGACCAGGCCCC
TTTTCCCCCGCTCCCATCGATTGCCTCCTTCCTTACCATCTGGTGTATCT
GCGTGTTGTGTGGCAGCTGGACGCCGGTCAGATGTCGTTCGAGAGGACCG
GACTCGCCTTGCAGAACCCCGACATCCAGCGCGCCGTTACCAAGGCCCTT
GGCACGGTGCCGAGGGACGATGCGTTGCTGGCGATGCCGAAAGCGTCCAG
GCAAGCATATACATGGGCACACATGTTTAGTGATCTGCAATATCTTGGCC
TCTACTGTACTTGCTATTTTGTTGTTGCTGTTGAACACGTATATTGTGTC
AACGTACATACCGCGCACGTTGGCTACTTGGCGGAAAAAACGAAATGAAC
AAGCCCGAGAGGTCTTAGGGCTAGTGTAGAATACGACTCAACAGGAGATC
GCGGAGAGCACATGACATAATAGACTATTTTGCTTACACGAACTGGGTCA
TTGCACCATCCCACGCGGGAAAAATCTCATCGCGTATGTATGATAGAGCA
AAAGTCGGGTCGGTGATTAATCCAACCGTTAACACGTTAACACGTCCGCT
TCGTTTGGAAGCGAAGAGAAAAGAGACCACTATTCCTTGGCAGCAATGGC
TCATGAGAAGAACAAACATGGACCACTGCGCGTGCCTGCTGCTGTAGAGA
CGTGCACATATCGTTGCAGCATGGTGTATGTCTGGAGTCCGCGCGTTCTG
CTCCGTGATGAAGGGTTGAACAGCAATACGACGGGGAGGAGGTGCTCTTT
TGTCATGGTGATGGTTACCTCCACCAGTGCTTTGCCTCTGGTACAAAACA
GTACACAGCAGTACACAGCAGTACACCGTCCTTGACAAAGGCGTCAAGTT
CTGCACAGCAGTACGTAGCCAAAGCAACCCTGTGCGCGTACATGACATTG
TACGATAATTCGGGTTTGAGAAACGCGAGCCACATGTTCTTTTGGCGAGC
TTCATTTTTTCCCGCTCTACGTTCCGCTCACGCGCTTGGCTTGCGCAACC
GTTGCCGTGCTGTTGACCGGTGTTCTCTTCCGTTCTTTTCCACCGTTGTC
CGCGTATTGCTACGCTGCTTCAGATCTACTCGGGCGGTCCTGTCATCCCT
GATGATCGTGTACCATCCTGGCGAGGTGCTGACGGCTGAAGGCGACGACG
ACGACGGTGGTGGTAGCGGTGGGTTGTTTGTTTTGATTTCCTGTGTGATC
AATGTCACGGGCGACCTCTACCTGTGTTTTGAGTTTCGTTGGGGGGGTAC
ATAGAAGCGGTGTGTATGGTGATGAACGAAGGACCATCTGGCCGACACAC
GGTGTGCGTGTTGTGTTCGGTTGTACCAAAGATCGATTGCAGCTAGTTTG
CGCGCCACTTGGACTCTGAAGGCGTTTGCCTATTTACCAGGCATATGAAG
GATTTTTTTTTCGCGAGAATACTTTTTCCACACCTACCTGGTGAGAGTAA
GCACCACGATCGTTTCGCTTTCGTGGGAGATTTTTTATTTGGCACGGGCG
CGACAGCAACACATTAGACCACCATCATCACGGCAATCAACCGCACAACA
CGTATGCGACGCCCCCATCTTCCCGGGAGCAGGAGCGGCGGCGGCAGCAA
CGACGGCGTCGTCGTCAACGACACCCCCTTCCCCGACCCGCCTGGGCTCC
ACGGAAGAACCAACACCCGTGGAAGGCGTCGCCGCCACTAAGAAGAAGCT
AGACCCGGTGGCGGCAGCTCTGCGTAACGCCTCCGCCTTGCTCTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12965:728..4473-

>mRNA_Ecto-sp13_S_contig12965.2437.1 ID=mRNA_Ecto-sp13_S_contig12965.2437.1|Name=mRNA_Ecto-sp13_S_contig12965.2437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12965:728..4473- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAGCGAAAGCAGCCGCCGCCCCGGAAACAAACCAAGAAGACGA
GGCCCAGGAAGAGAGCGCTTCCAACGTTCTCCGGAGATTGTCCTCCCCGA
TCTTCGGCACGGCCGGCTTCAACTCGGACAGCGAGGGCAACGACCACAGC
GACGGTGATTTCAGCACCACCAAGGAGTCGAGGGGTGATGGCGAGGGTAG
CGATGACGAGGAGGAGACGGAGCGCAAGGAAGGCGCCGCCGAGGTGGTTC
AGCGGTGGTGGCGGGAGTGCCGGCGCGCGTCGAAGCGCATTGGGGCTGTG
GTTGCGGCGAGACCTGCGTTCGTTCGAATCCAGCAGCTCTTTGATAAGCT
GGACGCCGGTCAGATGTCGTTCGAGAGGACCGGACTCGCCTTGCAGAACC
CCGACATCCAGCGCGCCGTTACCAAGGCCCTTGGCACGGTGCCGAGGGAC
GATGCGTTGCTGGCGATGCCGAAAGCGTCCAGATCTACTCGGGCGGTCCT
GTCATCCCTGATGATCGTGTACCATCCTGGCGAGGTGCTGACGGCTGAAG
GCGACGACGACGACGGTGGTGGTAGCGGAGCGGCGGCGGCAGCAACGACG
GCGTCGTCGTCAACGACACCCCCTTCCCCGACCCGCCTGGGCTCCACGGA
AGAACCAACACCCGTGGAAGGCGTCGCCGCCACTAAGAAGAAGCTAGACC
CGGTGGCGGCAGCTCTGCGTAACGCCTCCGCCTTGCTCTTG
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