mRNA_Ecto-sp13_S_contig12963.2435.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig12963.2435.1
Unique Name	mRNA_Ecto-sp13_S_contig12963.2435.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Match: A0A6H5JW48_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW48_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 2.950e-127
Identity = 220/311 (70.74%), Postives = 225/311 (72.35%), Query Frame = 1

Query:    1 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEMEDALEQELQAKIDAREAKEAGKSTTSAPLA---PDHDRIG-------------------WASN------PTPEA--RPGTK----TGV-------------------------GKYLGA----AAATTLPRSASTSSAAKAPEGAARAAG 744
            GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEMEDALEQELQAKIDARE  + GK       A   P  +R+G                   W SN      P  EA   PG      TG+                           YL A    +AATTLPRSAS SSAA APEGAARAAG
Sbjct:   46 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEMEDALEQELQAKIDAREVSKGGKKVDKVRTARPRPRPNRLGKQPDARSTAGHQDRHIAEHWLSNMCDLYEPEGEAFVSPGDSWRSCTGLLTDASLPPRLTSGADIPGIEALLTPPGYLFALLLPSAATTLPRSASMSSAATAPEGAARAAG 356

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BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Match: D8LLL2_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL2_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 1.090e-98
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 1

Query:    1 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPRED 435
            GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSC+HLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPRED
Sbjct:  308 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCKHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPRED 452

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BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Match: A0A836CDG8_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG8_9STRA)

HSP 1 Score: 246 bits (628), Expect = 8.840e-76
Identity = 110/162 (67.90%), Postives = 133/162 (82.10%), Query Frame = 1

Query:    1 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEME 486
            GY QLQT+ GNIN+E+H D+VP+ AENFLGLCEK YYDGT FHRSIR+F++QGGDPTG+G GGES WG K +DEF+ R++HDKRG+L+MANSGP T  SQF+ITYKSC+HLD +HSVFG VVGG+  L  +EAVPTD  DKP  +I L+KA V  NP+ EME
Sbjct:  308 GYVQLQTSHGNINIEVHVDMVPKTAENFLGLCEKGYYDGTIFHRSIRHFVIQGGDPTGTGTGGESIWGEKFRDEFDERLSHDKRGILAMANSGPHTNASQFYITYKSCKHLDRKHSVFGSVVGGLATLGNMEAVPTDKADKPEREITLLKAIVLQNPIPEME 469

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BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Match: A0A7R9Y1U7_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y1U7_9VIRI)

HSP 1 Score: 245 bits (625), Expect = 9.330e-76
Identity = 121/222 (54.50%), Postives = 150/222 (67.57%), Query Frame = 1

Query:    1 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEMEDALEQELQAKIDAREAKEAGKSTTSAPLAPDHDRIGWASNPTPEARPGTKTGVGKYLGAA 666
            GY +L T+ G++NVE+HCD+VPR  ENFLGLC K YYDG  FHRSIRNFM+QGGDPTGSGRGGES WG   KDEF++R+ HD RGVLSMANSGP T  SQFF+ Y+  RHLDN+HSVFGRVVGG+  L A+EAVPT   D+P + + + K T+F +P  ++++  E   +A  DA+  +      T   L    D   W   P   A     +GVGKYL AA
Sbjct:  188 GYVRLHTSHGDLNVELHCDLVPRTCENFLGLCRKGYYDGVGFHRSIRNFMIQGGDPTGSGRGGESMWGKPFKDEFDNRLAHDARGVLSMANSGPHTNKSQFFVLYRQARHLDNKHSVFGRVVGGLDVLNALEAVPTGEGDRPTQPVTIEKVTIFVDPYQKIKEEEEARTRASADAQREQAEQAHRTQIDL---DDGQSWLGVPKVSAPAQRGSGVGKYLPAA 406

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BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Match: A0A7M7KJN9_VARDE (RING-type E3 ubiquitin transferase n=3 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7KJN9_VARDE)

HSP 1 Score: 242 bits (618), Expect = 7.180e-74
Identity = 118/206 (57.28%), Postives = 148/206 (71.84%), Query Frame = 1

Query:    1 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEMEDALEQ---ELQAKIDAREAKEAGKSTTSAPLAPDHDRIGWASNP 609
            GY QL T  GN+N+E+ CDIVP+  ENF+ LCE+EYYDG+ FHRSIRNF+LQGGDPTG+GRGGES WG    DEF+S + H  RGVLSMANSGP+T  SQFFITY+SCRHLDN+H+VFG+VVGG+P L  IE + TD+KD+P E++ L+KATVF NP  E +D L +   E +A  +  E KE  +  +   L      +G   NP
Sbjct:  276 GYVQLTTNHGNLNLELLCDIVPKTCENFIKLCEREYYDGSIFHRSIRNFILQGGDPTGTGRGGESAWGEPFSDEFKSHLVHQGRGVLSMANSGPNTNKSQFFITYRSCRHLDNKHTVFGKVVGGLPTLQTIEEIETDNKDRPIEEVRLIKATVFVNPFQEADDELAKKRDEEKAIQEGEELKERRRENSKVKLKTFSTGVGKYINP 481

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BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Match: B7P5X3_IXOSC (RING-type E3 ubiquitin transferase n=4 Tax=Ixodes TaxID=6944 RepID=B7P5X3_IXOSC)

HSP 1 Score: 241 bits (616), Expect = 1.360e-73
Identity = 110/183 (60.11%), Postives = 146/183 (79.78%), Query Frame = 1

Query:    1 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEMEDALEQELQAKIDAREAKEAGK 549
            GY QLQTT GN+N+E+ CD+VP+  ENFLGLC+K YYDGTKFHRSIR+FM+QGGDPTG+G+GGES WG   +DEF+  + H  RG+LSMAN GPD   SQFFITY+SCRHLD++HSVFG++VGG+ AL AIE+V TD+KD+P EDIVL++A VF +P  E+++ L ++ + +   +E  E+ +
Sbjct:  278 GYIQLQTTHGNLNLELFCDMVPKTCENFLGLCKKGYYDGTKFHRSIRHFMVQGGDPTGTGKGGESLWGKPFRDEFKPNLVHQGRGMLSMANEGPDMNKSQFFITYRSCRHLDSKHSVFGKLVGGLEALNAIESVETDNKDRPIEDIVLLRAVVFVDPYEEVDEELRKKREEERTKQEVHESAE 460

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BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Match: A0A131XE12_9ACAR (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Hyalomma excavatum TaxID=257692 RepID=A0A131XE12_9ACAR)

HSP 1 Score: 231 bits (590), Expect = 4.290e-73
Identity = 102/164 (62.20%), Postives = 135/164 (82.32%), Query Frame = 1

Query:   10 QLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEMEDALEQ 501
            QLQTT GN+N E++CD VP+  ENF+GLC+K YYD TKFHRSIR+FM+QGGDPTG+G+GG+S WG   KDEF+  + H  RG+LSMAN GP+T  SQFF+TY+SCRHLD++H+VFG++VGG+ AL  IEAV TD+KD+P EDIV++KA VF +P  E+++ L++
Sbjct:    2 QLQTTHGNLNFELYCDAVPKTCENFMGLCKKGYYDNTKFHRSIRHFMIQGGDPTGTGKGGDSLWGKPFKDEFKPNLVHQGRGMLSMANEGPNTNKSQFFVTYRSCRHLDSKHTVFGKLVGGLDALNTIEAVETDNKDRPIEDIVILKAVVFVDPYEEVDEELKK 165

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BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Match: A0A023GL60_AMBTT (RING-type E3 ubiquitin transferase n=1 Tax=Amblyomma triste TaxID=251400 RepID=A0A023GL60_AMBTT)

HSP 1 Score: 239 bits (609), Expect = 1.780e-72
Identity = 107/167 (64.07%), Postives = 136/167 (81.44%), Query Frame = 1

Query:    1 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEMEDALEQ 501
            GY QLQTT GN+N E++CD VP+  ENF+GLC+K YYD TKFHRSIR+FM+QGGDPTG+G+GGES WG   KDEF+  + H  RG+LSMAN GP+T  SQFF+TY+SCRHLD +HSVFG++VGGM AL AIE V TD+KD+P EDIV++KA VF +P  E+++ L++
Sbjct:  280 GYVQLQTTHGNLNFELYCDAVPKTCENFMGLCKKGYYDNTKFHRSIRHFMIQGGDPTGTGKGGESLWGKPFKDEFKPNLVHQGRGMLSMANEGPNTNKSQFFVTYRSCRHLDTKHSVFGKLVGGMDALNAIETVETDNKDRPIEDIVILKAIVFVDPFEEVDEELKK 446

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BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Match: UPI001425BB41 (RING-type E3 ubiquitin-protein ligase PPIL2-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425BB41)

HSP 1 Score: 238 bits (606), Expect = 5.090e-72
Identity = 116/220 (52.73%), Postives = 153/220 (69.55%), Query Frame = 1

Query:    1 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEMEDALEQELQAKIDAREAKEAGKSTTSAPLAPDHDR-IGWASNPTPEARPGTKTGVGKYL 657
            GY +L T KG +N+E+HCD+VP+  ENF+  C+  YY+ T FHRSI+NFM+QGGDPT +G+GGES WGG  KDEF+  +TH  RG+LSMANSGPDT  SQFF+TY+SCRHLD +H+VFGRVVGG+  L  +E + TDSKD+P E+I + KATVF NP  E ++ L ++ Q   D  EAK+AG S    P+  + D+ + + S            GVGKY+
Sbjct:  275 GYVRLTTNKGTLNLELHCDMVPKTCENFMKHCQSGYYNNTVFHRSIKNFMIQGGDPTATGKGGESVWGGTFKDEFKPNLTHTGRGMLSMANSGPDTNKSQFFLTYRSCRHLDGKHTVFGRVVGGLDTLTVMEKIKTDSKDRPTEEIKIEKATVFVNPYEEADEQLAKDRQRVKDEEEAKKAGPSK---PVTKESDKPVVYRS------------GVGKYI 479

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BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Match: A0A8J4BP70_9CHLO (RING-type E3 ubiquitin transferase n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4BP70_9CHLO)

HSP 1 Score: 242 bits (618), Expect = 5.190e-72
Identity = 122/217 (56.22%), Postives = 155/217 (71.43%), Query Frame = 1

Query:    1 GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQFFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVKATVFSNPVTEMEDALEQELQAKIDAREAKEAGKSTTSAPLAPDHDRIG-WASNPTPEARPGTKTGVG 648
            GY +L T  G++N+E+HCD+ PR  ENFL LC+  YYDGT FHRSI+NFM+QGGDPTG+G+GGES +G   +DE +SR+ H  RGVLSMANSGP+T GSQFFIT+KSCRHLD +HSVFGRVVGG+  L+A+E VPTD  D+P   + +  AT+F+NP  EME     E +AK +A E K A K   +A   P  ++IG W S P+  A   T+ GVG
Sbjct:  414 GYVRLHTNLGDLNIELHCDLAPRTCENFLALCDMGYYDGTVFHRSIKNFMIQGGDPTGTGKGGESIFGPTFRDELDSRLVHAGRGVLSMANSGPNTNGSQFFITFKSCRHLDFKHSVFGRVVGGLDVLSAMEKVPTDPDDRPTAPVTIKGATIFTNPFYEME-----EEEAKAEAAERKRAEKEAAAA-SDPRMNKIGSWYSKPSAAAAGDTEGGVG 624

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig12963.2435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JW48_9PHAE	2.950e-127	70.74	PPIase cyclophilin-type domain-containing protein ...	[more]
D8LLL2_ECTSI	1.090e-98	99.31	RING-type E3 ubiquitin transferase n=1 Tax=Ectocar...	[more]
A0A836CDG8_9STRA	8.840e-76	67.90	RING-type E3 ubiquitin transferase n=1 Tax=Tribone...	[more]
A0A7R9Y1U7_9VIRI	9.330e-76	54.50	Hypothetical protein n=1 Tax=Prasinoderma colonial...	[more]
A0A7M7KJN9_VARDE	7.180e-74	57.28	RING-type E3 ubiquitin transferase n=3 Tax=Varroa ...	[more]
B7P5X3_IXOSC	1.360e-73	60.11	RING-type E3 ubiquitin transferase n=4 Tax=Ixodes ...	[more]
A0A131XE12_9ACAR	4.290e-73	62.20	Peptidyl-prolyl cis-trans isomerase (Fragment) n=1...	[more]
A0A023GL60_AMBTT	1.780e-72	64.07	RING-type E3 ubiquitin transferase n=1 Tax=Amblyom...	[more]
UPI001425BB41	5.090e-72	52.73	RING-type E3 ubiquitin-protein ligase PPIL2-like n...	[more]
A0A8J4BP70_9CHLO	5.190e-72	56.22	RING-type E3 ubiquitin transferase n=2 Tax=Volvox ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig12963	contig	Ecto-sp13_S_contig12963:891..4247 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	308.9
Seed ortholog evalue	2.1e-81
Seed eggNOG ortholog	2880.D8LLL2
Preferred name	PPIL2
Model size	746
KEGG ko	ko:K06532,ko:K10598
KEGG Pathway	ko04120,ko05202,map04120,map05202
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000209,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0002376,GO:0003006,GO:0003674,GO:0003755,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005796,GO:0005886,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0007530,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016477,GO:0016567,GO:0016740,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0018992,GO:0019538,GO:0019787,GO:0022414,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033036,GO:0034450,GO:0034613,GO:0034641,GO:0036211,GO:0040011,GO:0040021,GO:0040022,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0048870,GO:0050900,GO:0051179,GO:0051641,GO:0051674,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0070727,GO:0071704,GO:0071944,GO:0072657,GO:0072659,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990778
Exons	5
EggNOG free text desc.	peptidyl-prolyl cis-trans isomerase activity
EggNOG OGs	COG0652@1,KOG0883@2759
EC	5.2.1.8
Cds size	744
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko03041,ko03110,ko04090,ko04121,ko04147

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462693.8078897-CDS-Ecto-sp13_S_contig12963:890..1046	1681462693.8078897-CDS-Ecto-sp13_S_contig12963:890..1046	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12963 891..1046 +
1681462693.818358-CDS-Ecto-sp13_S_contig12963:1722..1934	1681462693.818358-CDS-Ecto-sp13_S_contig12963:1722..1934	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12963 1723..1934 +
1681462693.826838-CDS-Ecto-sp13_S_contig12963:2943..3106	1681462693.826838-CDS-Ecto-sp13_S_contig12963:2943..3106	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12963 2944..3106 +
1681462693.8351476-CDS-Ecto-sp13_S_contig12963:3405..3514	1681462693.8351476-CDS-Ecto-sp13_S_contig12963:3405..3514	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12963 3406..3514 +
1681462693.8428884-CDS-Ecto-sp13_S_contig12963:4141..4245	1681462693.8428884-CDS-Ecto-sp13_S_contig12963:4141..4245	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12963 4142..4245 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig12963.2435.1	prot_Ecto-sp13_S_contig12963.2435.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig12963 891..4245 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig12963:891..4247+
coding sequence from alignment at Ecto-sp13_S_contig12963:891..4247+

protein sequence of mRNA_Ecto-sp13_S_contig12963.2435.1

>prot_Ecto-sp13_S_contig12963.2435.1 ID=prot_Ecto-sp13_S_contig12963.2435.1|Name=mRNA_Ecto-sp13_S_contig12963.2435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp
GYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFM
LQGGDPTGSGRGGESYWGGKIKDEFESRMTHDKRGVLSMANSGPDTTGSQ
FFITYKSCRHLDNQHSVFGRVVGGMPALAAIEAVPTDSKDKPREDIVLVK
ATVFSNPVTEMEDALEQELQAKIDAREAKEAGKSTTSAPLAPDHDRIGWA
SNPTPEARPGTKTGVGKYLGAAAATTLPRSASTSSAAKAPEGAARAAG

mRNA from alignment at Ecto-sp13_S_contig12963:891..4247+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig12963.2435.1 ID=mRNA_Ecto-sp13_S_contig12963.2435.1|Name=mRNA_Ecto-sp13_S_contig12963.2435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12963:891..4247+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTACTGCCAGCTTCAGACCACCAAGGGGAACATCAACGTCGAGATCCA
CTGCGACATCGTTCCGCGCATGGCCGAGAACTTTCTGGGGCTGTGTGAGA
AGGAGTACTACGACGGGACCAAGTTCCACCGGAGCATTCGTAATTTCATG
CTTCAGGTACGTGGGTGTACGGTGCTATGGCGGTGTCGGTGGCGATGTTT
CGGTTTGGTTATGTTCGGAACGCTAGGAAGAAGAAGACGCCGGTGCGATT
AAAACACCAAGGAGTTATTGTTCGATTTTCTGTTAAAACGGCCTTTGCTG
AAAACGAGTGTGGCCGTTTTTCGCGCGGACCAGTACTGGCGACTGTGTGA
GGTGAACATTTTAGGGACCAAGGGGTGAACCTGGCTCCGCCGAAAAGGAA
ATGGTGCATGTTCGTCAGTGTCATTTCCTTGTTCTTTGTTCTTTTTGAGT
CTAGCTCTGTTCCCGTACGTTGTTTACTGTAGTGTTCTGTTTCTCTATTG
CGCTGGGTTCGTCACTCTCAAGTTTTAGCGCGCTCTTTTCCTGCGGACCA
AAACCCAGCACTGCCTCCAACCTGCTCGTTTCTTCTCGCCCGTATGTGTG
TCCCTCTATCTTCAGCCCCCGCCCCGCTCCCCCGCGGGAAGTGATATCGA
TAGGATAGACAGGCCAGGGAAGACAGTTTTGAGCCACCTTTGGCAAAGCA
AGAAGGAACGATTGGCCATCGGTGATGGGTCCTATGGGAACAATGCTCCG
TCATCTCGTGGTCAGTGGTCTAACCGCTCAAGGCATGCAATACATAAGAG
TACCCCCTCCCGTCTCCGTAACGCCAATGCAGGGGGGAGACCCGACGGGG
TCCGGGCGGGGAGGCGAGAGCTACTGGGGCGGCAAGATCAAGGACGAGTT
CGAGTCCCGCATGACGCACGACAAGAGGGGCGTGCTGAGCATGGCCAACT
CGGGACCGGACACGACGGGCTCGCAGTTCTTCATTACGTACAAGTCGTGC
AGGCACCTCGACAACCAGCACTCCGTCTTCGGGAGGGTGGTCGGGTGAGG
GGAGAGGCGTTTGCTCGTCACCTGTTGTTTTCTGTTGGTGGCACTATTTT
AGGCGCACTCTTGACGTTTTTCCCCGGCGAAATACTTGTCGTTCGCATCT
GCAATTGTGAGAAAAAAACGTACCGGGGTGAGGGAGTGAACAAAAGGGGG
CGGGAATTGGAGGCTGTTAGGAATGCAATGACCCTCCAGCTGGGCCTTGG
TCGCAATTAAGGTGTTGCGATCTTCCCACATGCTTTGAAATTTGGCGTTC
GTCTTGAGGCATTCGGGCCAACGTGCACATGGAATTGTCTCTTTTTCGCA
GCCCATAATCAGTCCACCGGAGGAGGGACAACACATTCGGGCCAACGTGC
TCATGGAGTTGTCTCTTTTTCGCAGCCTATAATCAGTCCACCGGAGGAGG
GGCAACACAGCATCACGGTTCTATACCTCGCCTTGCATCAACCAAATTTT
ATGTCTCAGCGAATCCAAATATGAACTTGCGTTCTTCGCTCTGTCGTGCT
TCCTTTTGTGACACGCACACATGCGTGTACGGCGCCATGTTGACTGGAGG
AGAGAAATGTAAAGACATTTACCCTCGGCTATCGTGTCCGCACTCGTTTT
CCCTTCTTGCCTGCTCTTCTTGCGTTCCGTTCGCACGGAGTGTGTGCTTC
CTAAGCTGCGGGACAAGTCCCTCTGACTGCCTCTTTGTTGTTCTCCTGTG
GCGTGCCATGACACCCACCCACTGACTGCACTCGTCATTGTTCACGAGAG
GAACGCCTCCGGCTCGTCGGATCGCAGCAAGCGGCGCCGCACTCGATGCC
CCTGTCGCTCTCATCTCTCTACTGTCGCCACGATGTCTCTCTCGCTTGCA
TCAACAGCCTCGTCTGCTCTGCTTGCTTTTGTTGGTGAAAGTTCGTGACA
AGACACAGGCCCAGCTCCTCTCCTCAAGCTGCGCCATCGTGCCATCGACG
CCAACTTGACGTGCCCTTTTTTTTCCCTCTCTTTTTTTTGTTCACCGGAC
CAGTGGCATGCCAGCGCTGGCCGCGATAGAGGCGGTTCCCACAGACTCGA
AGGACAAGCCGAGGGAGGACATCGTGCTTGTCAAGGCGACGGTGTTCAGC
AACCCCGTCACGGAAATGGAGGACGCGCTGGAGCAAGAGCTGCAGGCCAA
GATCGACGCGAGAGAAGTGAGTCACGGCTGTTGCCGTTGTTGTTGTTGTT
TTGTTTTTGTTGGTGTGGTCATTGCTGTTGTTACTGTCGTTGCTGCTGCG
GGTGCTGTTGTGGTGGTGGCGGTGCTTCTGGTCGATTTTCGGCTGCCGTG
GTTGCGTGTGTGCCCCCTGCTGCTGTCGTGCTTCTGCCATCTAGTTCGCG
CTACCTATCCTTCTGCTGCCGTTATGGACTGAACCTGTTTGAGGCATAGG
CATCTATTTAGTGATATTCGCCCTCATTTCACTGCACCCCCCCTCCTCCC
CCCGTGGCGCAACAGGCAAAGGAGGCAGGAAAGTCGACAACGTCCGCACC
GCTCGCCCCCGACCACGACCGAATTGGCTGGGCAAGCAACCCGACCCCAG
AAGCACGGCCGGGCACCAAGACTGGTGAGTAGGACTCTCCTTGCCTACCC
CCGGCGCTTGTCTGCTCGCGTCATTGTGCCTGAGTTTCTTGCTCAGTTGC
GTCCCGCAGACCAGGACCCCCGGTAGGCCAGTGAAACTAGCAGTGGTGAG
TGGCCGCCGCCTAAAGGGCGGTACGCCCTTCTGTGTGTCTGCGTGGTGAT
GCGATTCGTTCTCCTATTGCTTTGCGCGCCGTCGTGTGTGAGCCGAAACC
TTTGTGCTGTTGTGCGTGGGGTCTTCGTTCTAGAAGTTACAGCAGTGTCG
GAGATGCAACAAGAGCAGTCGCAACATTCGCTTACTCGAGGCTTCGCCCC
GATGGAAAACTGGAATTGCGCTTTCTATGTGCCCGCCCACCCCCCTTGAC
CGGAATATCTGTGTCCACTTTGTGTCCCGTGGGGATTCATGGCGTTCATG
CACGGGGCTTCTGAAAGATGCGCCGTTAGCTCCAAGGTTGACGAGTAGTG
CTGACATCCCGGGAGGCTTTGTTGACGCCCCCCGAGTATTTGCTAGCCCT
CCTCCTCCCCTTCAGGTGTGCCATGTACCCATTGAGTCCGCCCCTGGTTT
TGGTTCTGATCTTCCCGCCTTCTCTGCCCTTTCCCCCGATGCCGTTCTAA
GGAGTGGGAAAGTATCTCGGAGCCGCAGCCGCGACCACCCTGCCCCGCTC
GGCTTCGACGTCGTCGGCCGCCAAAGCACCGGAAGGAGCGGCAAGAGCGG
CCGGAGC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12963:891..4247+

>mRNA_Ecto-sp13_S_contig12963.2435.1 ID=mRNA_Ecto-sp13_S_contig12963.2435.1|Name=mRNA_Ecto-sp13_S_contig12963.2435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12963:891..4247+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTACTGCCAGCTTCAGACCACCAAGGGGAACATCAACGTCGAGATCCA
CTGCGACATCGTTCCGCGCATGGCCGAGAACTTTCTGGGGCTGTGTGAGA
AGGAGTACTACGACGGGACCAAGTTCCACCGGAGCATTCGTAATTTCATG
CTTCAGGGGGGAGACCCGACGGGGTCCGGGCGGGGAGGCGAGAGCTACTG
GGGCGGCAAGATCAAGGACGAGTTCGAGTCCCGCATGACGCACGACAAGA
GGGGCGTGCTGAGCATGGCCAACTCGGGACCGGACACGACGGGCTCGCAG
TTCTTCATTACGTACAAGTCGTGCAGGCACCTCGACAACCAGCACTCCGT
CTTCGGGAGGGTGGTCGGTGGCATGCCAGCGCTGGCCGCGATAGAGGCGG
TTCCCACAGACTCGAAGGACAAGCCGAGGGAGGACATCGTGCTTGTCAAG
GCGACGGTGTTCAGCAACCCCGTCACGGAAATGGAGGACGCGCTGGAGCA
AGAGCTGCAGGCCAAGATCGACGCGAGAGAAGCAAAGGAGGCAGGAAAGT
CGACAACGTCCGCACCGCTCGCCCCCGACCACGACCGAATTGGCTGGGCA
AGCAACCCGACCCCAGAAGCACGGCCGGGCACCAAGACTGGAGTGGGAAA
GTATCTCGGAGCCGCAGCCGCGACCACCCTGCCCCGCTCGGCTTCGACGT
CGTCGGCCGCCAAAGCACCGGAAGGAGCGGCAAGAGCGGCCGGA