mRNA_Ecto-sp13_S_contig12962.2433.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12962.2433.1
Unique NamemRNA_Ecto-sp13_S_contig12962.2433.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12962.2433.1 vs. uniprot
Match: D8LF11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF11_ECTSI)

HSP 1 Score: 488 bits (1255), Expect = 2.980e-169
Identity = 265/298 (88.93%), Postives = 267/298 (89.60%), Query Frame = 2 
Query:    2 VTAMVALRRGAGVFQRGLRQQSRPRGSACLSKQTKAPRACNTACTAFSVAGFDSRSSPTAGRWSACVSVHRNEHLRPLVSPAVPVAVALRSVQHLSSSGRGGREKRGGADKPRRSNTSNNSREGKEKEKEG-YTFLEKDDLGRLSNESKGGLKTDTAAARGAEEEVDAANVTLWQRWKQARAKMKLLWKQYGLVWIGTYTVLYFGGLAGIYVVLDTGLVASDVDTSHAIQVLADYIGAQDNPSVTWLQNTIKTNPKANTLLKAVIVNELIEYPRDIVAIAATPSIARALGRAPPKTKT 892
            V AMVALRRGAGVFQRGLRQQSRPRGSACLS+Q K PRACNTA    SVA F SRSSPTAGRWSACVSVHRNE LRPLVSP VPVAVALRSVQHLSSSGRGGREKRGGADK RRSNT               YTFLEKDDLGRLSNE K GLKTDTAAARGAEE+VDA NVTLWQRWKQARAKMKLLWKQYGLVWIGTYTVLYFGGLAGIYVVLDTGLVASDVDTSHAIQVLADYIGAQDNPSVTWLQNTIKTNPKANTLLKAVIVNELIEYPRDIVAIAATPSIARALGRAPPK KT
Sbjct:    2 VMAMVALRRGAGVFQRGLRQQSRPRGSACLSQQAKVPRACNTA---VSVASFGSRSSPTAGRWSACVSVHRNEDLRPLVSPVVPVAVALRSVQHLSSSGRGGREKRGGADKRRRSNTXXXXXXXXXXXXXXEYTFLEKDDLGRLSNEPKSGLKTDTAAARGAEEKVDATNVTLWQRWKQARAKMKLLWKQYGLVWIGTYTVLYFGGLAGIYVVLDTGLVASDVDTSHAIQVLADYIGAQDNPSVTWLQNTIKTNPKANTLLKAVIVNELIEYPRDIVAIAATPSIARALGRAPPKAKT 296
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BLAST of mRNA_Ecto-sp13_S_contig12962.2433.1 vs. uniprot
Match: A0A8K1C653_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C653_PYTOL)

HSP 1 Score: 63.2 bits (152), Expect = 1.150e-7
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 2 
Query:  521 QRWKQARAKMKLLWKQYGLVWIGTYTVLYFGGLAGIYVVLDTGLVASDVDTSHAI----QVLADY-IGAQDNPSVTWLQNT--------IKTNPKANTLLKAVIVNELIEYPRDIVAIAATPSIARALGRAPPKTKT*K 898
            ++ K   +K+K LW+QYG+V +GTY  +YF  L  IYV ++ G V++   TS +     +  AD+ +    N  VTW ++          + N K  + + A +  +  E  R  V +A TP IAR +GRAP   K  K
Sbjct:   87 EKGKSGWSKLKELWRQYGMVAVGTYFSMYFTVLGSIYVAIEQGWVSTK-RTSRSEGENGEANADFNVVTATNKVVTWAEDMGIAKHLDLQRVNAKTGSFVIAWVATKFTEPLRLAVTLAITPRIARLVGRAPKLPKAPK 224
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BLAST of mRNA_Ecto-sp13_S_contig12962.2433.1 vs. uniprot
Match: M4BYX8_HYAAE (DUF1279 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYX8_HYAAE)

HSP 1 Score: 58.2 bits (139), Expect = 6.830e-6
Identity = 40/127 (31.50%), Postives = 60/127 (47.24%), Query Frame = 2 
Query:  545 KMKLLWKQYGLVWIGTYTVLYFGGLAGIYVVLDTGLVASDV----------DTSHAIQVLADYIGAQDNPSVTWLQNTIKTNPKANTLLKAVIVNELIEYPRDIVAIAATPSIARALGRAP---PKT 886
            ++K LW++YG V +GTY  LY   L  IY+ +D G V +D           +    +     ++   ++  +       + N K  + L A I  +  E  R  + +AATP IAR LGRAP   PKT
Sbjct:   92 RLKDLWRKYGAVAMGTYFSLYGAVLGSIYLAIDQGWVHTDTGRNSNDKPSDENFDLVSTTNKFVKWAEDLGIAQYLEVERVNAKTGSFLLAWIATKFTEPLRLALTVAATPRIARFLGRAPKLPPKT 218
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BLAST of mRNA_Ecto-sp13_S_contig12962.2433.1 vs. uniprot
Match: D7FNZ5_ECTSI (DUF1279 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ5_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.930e-5
Identity = 39/125 (31.20%), Postives = 66/125 (52.80%), Query Frame = 2 
Query:  530 KQARAKMKLLWKQYGLVWIGTYTVLYFGGLAGIYVVLDTGLVASDVDTSHAIQVLADYIGAQDNPSVTWLQN-------TIKTNPKANTLLKAVIVNELIEYPRDIVAIAATPSIARALGRAPPK 883
            K++  +++ LW++YG V IGTY  +YFG +A  Y + D G++ S      A+    +++      +  W Q         +  + +A + + A    +++E  R + AIA TP +ARALGRAP K
Sbjct:  324 KESSNRLQDLWRKYGAVGIGTYFGIYFGSIAVFYGIYDYGVLTSLPSGGTAV---IEHMQEWMKSAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAITPRMARALGRAPAK 445
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12962.2433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF11_ECTSI2.980e-16988.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1C653_PYTOL1.150e-733.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BYX8_HYAAE6.830e-631.50DUF1279 domain-containing protein n=1 Tax=Hyaloper... [more]
D7FNZ5_ECTSI2.930e-531.20DUF1279 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12962contigEcto-sp13_S_contig12962:1641..4879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1483
Hectar predicted targeting categorymitochondrion
Exons5
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-21_006290.1
Cds size885
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12962.2433.1prot_Ecto-sp13_S_contig12962.2433.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12962 2229..4869 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462693.6902459-UTR-Ecto-sp13_S_contig12962:1640..22281681462693.6902459-UTR-Ecto-sp13_S_contig12962:1640..2228Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12962 1641..2228 -
1681462693.7463598-UTR-Ecto-sp13_S_contig12962:4869..48791681462693.7463598-UTR-Ecto-sp13_S_contig12962:4869..4879Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12962 4870..4879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462693.7017233-CDS-Ecto-sp13_S_contig12962:2228..24591681462693.7017233-CDS-Ecto-sp13_S_contig12962:2228..2459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12962 2229..2459 -
1681462693.7139957-CDS-Ecto-sp13_S_contig12962:2969..31171681462693.7139957-CDS-Ecto-sp13_S_contig12962:2969..3117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12962 2970..3117 -
1681462693.7217836-CDS-Ecto-sp13_S_contig12962:3584..36551681462693.7217836-CDS-Ecto-sp13_S_contig12962:3584..3655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12962 3585..3655 -
1681462693.729456-CDS-Ecto-sp13_S_contig12962:4055..43381681462693.729456-CDS-Ecto-sp13_S_contig12962:4055..4338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12962 4056..4338 -
1681462693.7374444-CDS-Ecto-sp13_S_contig12962:4717..48691681462693.7374444-CDS-Ecto-sp13_S_contig12962:4717..4869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12962 4718..4869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12962.2433.1

>prot_Ecto-sp13_S_contig12962.2433.1 ID=prot_Ecto-sp13_S_contig12962.2433.1|Name=mRNA_Ecto-sp13_S_contig12962.2433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
MVALRRGAGVFQRGLRQQSRPRGSACLSKQTKAPRACNTACTAFSVAGFD
SRSSPTAGRWSACVSVHRNEHLRPLVSPAVPVAVALRSVQHLSSSGRGGR
EKRGGADKPRRSNTSNNSREGKEKEKEGYTFLEKDDLGRLSNESKGGLKT
DTAAARGAEEEVDAANVTLWQRWKQARAKMKLLWKQYGLVWIGTYTVLYF
GGLAGIYVVLDTGLVASDVDTSHAIQVLADYIGAQDNPSVTWLQNTIKTN
PKANTLLKAVIVNELIEYPRDIVAIAATPSIARALGRAPPKTKT*
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mRNA from alignment at Ecto-sp13_S_contig12962:1641..4879-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12962.2433.1 ID=mRNA_Ecto-sp13_S_contig12962.2433.1|Name=mRNA_Ecto-sp13_S_contig12962.2433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12962:1641..4879- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGACGGCAATGGTTGCTCTGCGAAGAGGTGCTGGAGTTTTCCAACGAG
GCCTTCGGCAACAAAGCCGACCAAGAGGTTCTGCTTGCCTCTCAAAGCAG
ACCAAGGCGCCTCGAGCATGCAACACCGCGTGTACTGCCTTCTCCGTGGC
CGGCTTCGATAGGTGAGAGCGGAAAACACGGTATGCGCTTGCTGTTGGTC
TCTGCTTCCAAGATGATGCGATGTAGCCGACTTTGCAGGTGTGGCGCTGA
CATGCAGCAAGCAACACCCATGAGCTTTGAAAGCGGCGTGATGTTCCCGT
TCTTGATAACTAGACCGCACCAGCAGAGAATTCATTAGACGCACACGACA
TGGGCATGCGTGTTGAATTGTCTCCTACCTGGGGTCAAGGTGTCAACACG
TTAGGACTCCTCTATACTGGGTCCCTTGCCCTTGTTTCTTCTGCACAGGA
ACCTGCCTCTCGTCCAGTGATTGCATTAGTCCAGGAACGCCTTCTTGATC
GTTTGTCCTGCCCTCGACCTCACTATCTCCGCCGAAAACAGCCGGAGCTC
GCCCACAGCTGGGCGCTGGAGCGCTTGTGTTTCCGTTCACAGAAACGAGC
ATTTGCGGCCATTGGTTTCGCCGGCGGTGCCAGTAGCGGTGGCGTTGCGT
AGCGTGCAGCACTTGTCTAGCAGCGGGAGAGGAGGGAGAGAAAAAAGGGG
CGGCGCAGACAAGCCGCGAAGAAGCAACACCTCTAACAACTCCCGGGAGG
GCAAGGAAAAGGAGAAGGAGGGATACACTTTCCTCGAGAAAGATGACCTT
GGCAGACTGTCGAACGAGTCCAAGGTGCGTACGCGCGAAAAGTGTGGGAA
GCTCCGTCAGTTTCTACCGCTGTTGCATTTTCAAGACCAACAAGGAGAAT
GAGTGATTACGTAGCGCGGTCTCTTCGTGTTGTACTATGAAAGGGATTTT
TGTGTTGCCAGCGCATGGCTACACCTGGCTCACGGGAAGGAGACGATCAC
TTCCGGGCAATGAAATTGATTGACCGTCATCCAACCGACAAGCACCTTTG
AGAGTACGCACAGGTAAAAAAGCAATATTCAATCCCTACAGACGCGATAC
GTTTCTACATGCAGACATCATTGACTATTAACCTGCTGCGTAGTGTTGCT
GACTTTTCAGTCAACGGCCACCCGTTCATGCTGTGCTGAAGCTTTTGCTT
GCCGCCGCAACGCTTTGAACGAAGGGCGGACTCAAGACGGACACGGCGGC
AGCCAGGGGGGCAGAGGAAGAAGTGGATGCAGCGAACGTGACCCTGTGAG
TATGCAATGAGCCAGCTGAGACACTGCAGGCATTGCATGCGACTTTTAGC
ATGTTTCCTTTCGTGCAGAAGTATAGACCCTGGTCGGTACGGTCCTCGGG
GCTGCTTTTCGGAACGTTATCTGTCGTGGTCCCCAGGCATGAAGACCACT
GCTGTCTGTAGGCGAACACATTTTCGGACTTAAAGCACCTCCCCCCTTCT
TCCCTGAGTTGGGAACCCTCTCCGCGGGAATTGGGTCGTCGGTAGCGCAC
ACAAAGGAGGAGGGTCGTTGTCGACCGCGACCGTCATTGGTTCCGTCCGT
AAAACGACACCAACAGCAATAGCGGCATCAGCGTGTCATGTCAATTTGAT
TGTGCTTCGAGGGATTCGGCCTGATGGTGATGCAACTACTCATTTTCACT
AAATCGAAGCCCACCGTGTTCTGACATACTGCGACTGTTTCCTGCAACGC
GCTACTCTAAAGGTGGCAGCGCTGGAAGCAGGCGAGGGCCAAGATGAAGT
TGCTGTGGAAACAATACGGTCTTGTATGGATCGGGACCTACACCGTCCTG
TACTTCGGCGGGCTAGCAGGGATCTACGTTGTTTTGGACACGGGCTTGGT
GGCATCTGATGTGAGCCCTGCGCAGTCGTTCAGAGCTTGATTGTCCGGTC
GAATTCAGCTGCAGTAGTGCCAACCAGGTGGGCGGGTTGAAGTTTTCCCG
AGCTTGGCATTCCTACAGCAGTAGACGCTGCGACTCTGACCGCATTTCGT
CTTCGTGATGCAGGATTCCTCTACCAAGTAGATGACGATATTTGTGTGTC
GGGACTGATGGCAGATAAGTCGGCGTTGGGGTCGGGTCGTGCCCACCCAT
GCAACGTAAAATAAGATATTCAGGTGGGTCTTATCGTACACGACCGCCAC
TAACGAACGTGTGTCTCACACGCGGAAGATGCGCTGGGGCTATCCATTTC
CAGGTGCCTGTGTTGGGGCAGTTGCAACAAATGGGAGGCGTTTGCCCCAC
GTGGGAGGCAGGCGCGTGCGATTATAGGCATTTCCCGTGCACACGGTATC
CTCGTTTCCAAAGCGCCTGTTGGGCTCCTGACCTCACTCGTTGCCTCTTT
TTGGAACGTCCCCGTCGCAGGTGGACACATCACATGCGATCCAAGTCTTG
GCAGACTACATCGGTGCCCAAGATAACCCCAGCGTGACGTGGCTTCAGAA
CACCATCAAGACCAACCCGAAGGCGAACACGCTCCTCAAAGCCGTGATCG
TCAACGAGCTGATCGAGTACCCGCGAGATATCGTAGCGATTGCTGCCACG
CCGTCGATTGCCCGTGCGCTAGGTAGGGCCCCACCGAAGACGAAGACCTG
AAAGGCTTCACTGTCCGCTCAAGGCAATGTTGACGCCTTGGCTTTGTGCG
TGTGACCAGCGTCTGTCTGATTTGGTTTTCCACGCTAGAGGGACGACTGC
TGTGGTAGGACTTCAACCCGAATCGCCTTGGGGTCCATCGAGAGTTGGAT
GGTACTGGTGATTGAATAAGGAGATTGGCTGTAAAAAACGTGTATCTGCC
TAAAGCGTGCAGACGTGTTATTTTTCATGGCTCGTGTTTTCCGTCATCCG
CAAGAGTGGGGGAGTGAGGTTTTGTTATGTGTACGGGCGTATTGTGCACA
CTTGAGGCACACGGTAGAAAAGTACGCCCTGCTTTTTTTCTGCCCAGTGG
GGGTGAAATGGCTTCGAACGAATCACGCATGACCTCGGGGAACATGAAGT
GTTGGAGAACTTCATTTGCCAGGCGCTTTGGAATCTTGCTTCGCAGCCGT
GGAACACAAACGGTAAGAATCAGAGAGACTGCGGGAGTTACATACTGTTG
TTTCTTTTGTAGGAAAGTGCAACACATGATAGCAACGGCGACGAGTCCAT
TACTTGTTAATCGGTTTAAAGGTTTGATGCAACCCAAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12962:1641..4879-

>mRNA_Ecto-sp13_S_contig12962.2433.1 ID=mRNA_Ecto-sp13_S_contig12962.2433.1|Name=mRNA_Ecto-sp13_S_contig12962.2433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12962:1641..4879- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCTCTGCGAAGAGGTGCTGGAGTTTTCCAACGAGGCCTTCGGCA
ACAAAGCCGACCAAGAGGTTCTGCTTGCCTCTCAAAGCAGACCAAGGCGC
CTCGAGCATGCAACACCGCGTGTACTGCCTTCTCCGTGGCCGGCTTCGAT
AGCCGGAGCTCGCCCACAGCTGGGCGCTGGAGCGCTTGTGTTTCCGTTCA
CAGAAACGAGCATTTGCGGCCATTGGTTTCGCCGGCGGTGCCAGTAGCGG
TGGCGTTGCGTAGCGTGCAGCACTTGTCTAGCAGCGGGAGAGGAGGGAGA
GAAAAAAGGGGCGGCGCAGACAAGCCGCGAAGAAGCAACACCTCTAACAA
CTCCCGGGAGGGCAAGGAAAAGGAGAAGGAGGGATACACTTTCCTCGAGA
AAGATGACCTTGGCAGACTGTCGAACGAGTCCAAGGGCGGACTCAAGACG
GACACGGCGGCAGCCAGGGGGGCAGAGGAAGAAGTGGATGCAGCGAACGT
GACCCTGTGGCAGCGCTGGAAGCAGGCGAGGGCCAAGATGAAGTTGCTGT
GGAAACAATACGGTCTTGTATGGATCGGGACCTACACCGTCCTGTACTTC
GGCGGGCTAGCAGGGATCTACGTTGTTTTGGACACGGGCTTGGTGGCATC
TGATGTGGACACATCACATGCGATCCAAGTCTTGGCAGACTACATCGGTG
CCCAAGATAACCCCAGCGTGACGTGGCTTCAGAACACCATCAAGACCAAC
CCGAAGGCGAACACGCTCCTCAAAGCCGTGATCGTCAACGAGCTGATCGA
GTACCCGCGAGATATCGTAGCGATTGCTGCCACGCCGTCGATTGCCCGTG
CGCTAGGTAGGGCCCCACCGAAGACGAAGACCTGA
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