mRNA_Ecto-sp13_S_contig12962.2432.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12962.2432.1
Unique NamemRNA_Ecto-sp13_S_contig12962.2432.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12962.2432.1 vs. uniprot
Match: A0A6H5K3C7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C7_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 6.810e-82
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 3 
Query:    3 MLKVGWTVEQQTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVVKGANGNVCAVVHSWDCGVEARRLLVEARETAPPDEGRAARQPSVEVICTAEVGEDLFQFVRWQLLSGATTEQVQQGLDDLFGAFYETEQEKP 407
            MLKVGWTVE+QTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVV+GANG VCAVVH+WDCGVEARRLLVEARET  P+EGRAARQPSVEVICTAEVGEDLFQFVRWQLLSGATT+QVQQGLDDLFGAFYETEQEKP
Sbjct:  395 MLKVGWTVERQTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVVEGANGKVCAVVHNWDCGVEARRLLVEARETVLPNEGRAARQPSVEVICTAEVGEDLFQFVRWQLLSGATTDQVQQGLDDLFGAFYETEQEKP 529
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BLAST of mRNA_Ecto-sp13_S_contig12962.2432.1 vs. uniprot
Match: D8LF10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF10_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 6.110e-75
Identity = 123/134 (91.79%), Postives = 126/134 (94.03%), Query Frame = 3 
Query:    3 MLKVGWTVEQQTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVVKGANGNVCAVVHSWDCGVEARRLLVEARETAPPDEGRAARQPSVEVICTAEVGEDLFQFVRWQLLSGATTEQVQQGLDDLFGAFYETEQEK 404
            MLKVGW +E+QTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVVKGAN  VCAVVHSWDCGVEARRLLV ARET  PDEGRAARQP  EVICTAEVGEDLFQFVRWQLLSGATTEQVQQGLDDLFGAFYETE+EK
Sbjct:  549 MLKVGWAIERQTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVVKGAN--VCAVVHSWDCGVEARRLLVGARETVLPDEGRAARQPCAEVICTAEVGEDLFQFVRWQLLSGATTEQVQQGLDDLFGAFYETEREK 680
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12962.2432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3C7_9PHAE6.810e-8294.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF10_ECTSI6.110e-7591.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12962contigEcto-sp13_S_contig12962:522..1594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size534
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006280.1
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462693.6193292-UTR-Ecto-sp13_S_contig12962:521..5231681462693.6193292-UTR-Ecto-sp13_S_contig12962:521..523Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12962 522..523 +
1681462693.661044-UTR-Ecto-sp13_S_contig12962:1470..15941681462693.661044-UTR-Ecto-sp13_S_contig12962:1470..1594Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12962 1471..1594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462693.6312118-CDS-Ecto-sp13_S_contig12962:523..6711681462693.6312118-CDS-Ecto-sp13_S_contig12962:523..671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12962 524..671 +
1681462693.644224-CDS-Ecto-sp13_S_contig12962:934..11001681462693.644224-CDS-Ecto-sp13_S_contig12962:934..1100Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12962 935..1100 +
1681462693.6529107-CDS-Ecto-sp13_S_contig12962:1376..14701681462693.6529107-CDS-Ecto-sp13_S_contig12962:1376..1470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12962 1377..1470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12962.2432.1prot_Ecto-sp13_S_contig12962.2432.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12962 524..1470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12962.2432.1

>prot_Ecto-sp13_S_contig12962.2432.1 ID=prot_Ecto-sp13_S_contig12962.2432.1|Name=mRNA_Ecto-sp13_S_contig12962.2432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MLKVGWTVEQQTSERLRNEAGVPVLVHSCSDEKTLTAAAGHVVKGANGNV
CAVVHSWDCGVEARRLLVEARETAPPDEGRAARQPSVEVICTAEVGEDLF
QFVRWQLLSGATTEQVQQGLDDLFGAFYETEQEKP*
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mRNA from alignment at Ecto-sp13_S_contig12962:522..1594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12962.2432.1 ID=mRNA_Ecto-sp13_S_contig12962.2432.1|Name=mRNA_Ecto-sp13_S_contig12962.2432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12962:522..1594+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGATGCTCAAGGTGGGCTGGACTGTCGAGCAGCAGACGTCTGAGCGGCTG
CGCAACGAGGCAGGCGTACCTGTTTTGGTGCACAGCTGCAGCGACGAGAA
GACGCTTACGGCTGCTGCCGGTCACGTCGTTAAGGGCGCAAACGGTAACG
GTAAGCTCTCCGCCCGTGCGCCACGGTTGCTTGTACCTATTTTTGTTGTA
CATGGTTGTGTGTGTCATCCCTTATTTATATTTGTCGCCTAGACGTCAGC
TTTTCGTCGTGATGACATACATTCCTCTTTTCTCTCGAGCGTATCGTAAA
AAACGGATGCCCGAGGGAGACATTTTCCTTTAGTTGTGTAGTGCGAATGT
GCTGTGGGATGACGTTTATTTCCAACCTTGCCGGATCTACTCGCCGCACG
CGTCCCCCTGCAGTGTGTGCTGTGGTGCACAGCTGGGACTGCGGAGTGGA
GGCGAGGCGTCTCTTGGTCGAAGCTCGAGAAACGGCACCACCGGATGAAG
GGCGTGCCGCGCGCCAGCCATCTGTGGAGGTGATTTGCACCGCGGAAGTG
GGAGAAGACTTATTCCAGTTCGTGAGATGGTGAGTGTACAGCTCGAGCGT
TTTCCTTCTGTCGGAAGAGAGTGAATCTTGTTTGGTTCAGGTTGCATGGG
CCTGGGTCTTTGTTTTGGTCAGGCGAGTGTTGGGTGCGCCGCCGCACTCG
AAGGACACTACTCTGAAGCACTCCCCTTTCGACGCATTTGTTCACGTGTG
GATGTCCCTCTCTCAGTTTCATTATCCCTCTCAACACGTTGCGGTCGTTC
GTTTGTCGATGATGATGATGGTGTTGGTGCCCCGGGAACGTTTCTGCTTA
TGCAGGCAGCTTTTGTCAGGAGCCACAACCGAGCAGGTGCAGCAGGGGCT
CGACGATCTCTTCGGCGCGTTCTACGAAACTGAACAAGAGAAACCATAGC
AGACTGACCGTTGCGGGTCAAGTGCTGAGATGGAAACGAGGCGCAAAGAG
TTGTACGATCGGCGAAGCCAGCTGCTCGTGAGGCCATCATTGTCGGACAA
GTCGATGCAAAGGAGTACCGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12962:522..1594+

>mRNA_Ecto-sp13_S_contig12962.2432.1 ID=mRNA_Ecto-sp13_S_contig12962.2432.1|Name=mRNA_Ecto-sp13_S_contig12962.2432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12962:522..1594+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAAGGTGGGCTGGACTGTCGAGCAGCAGACGTCTGAGCGGCTGCG
CAACGAGGCAGGCGTACCTGTTTTGGTGCACAGCTGCAGCGACGAGAAGA
CGCTTACGGCTGCTGCCGGTCACGTCGTTAAGGGCGCAAACGGTAACGTG
TGTGCTGTGGTGCACAGCTGGGACTGCGGAGTGGAGGCGAGGCGTCTCTT
GGTCGAAGCTCGAGAAACGGCACCACCGGATGAAGGGCGTGCCGCGCGCC
AGCCATCTGTGGAGGTGATTTGCACCGCGGAAGTGGGAGAAGACTTATTC
CAGTTCGTGAGATGGCAGCTTTTGTCAGGAGCCACAACCGAGCAGGTGCA
GCAGGGGCTCGACGATCTCTTCGGCGCGTTCTACGAAACTGAACAAGAGA
AACCATAG
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