prot_Ecto-sp13_S_contig12961.2431.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12961.2431.1
Unique Nameprot_Ecto-sp13_S_contig12961.2431.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length145
Homology
BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Match: A0A6H5KIJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ2_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 3.070e-81
Identity = 135/144 (93.75%), Postives = 138/144 (95.83%), Query Frame = 0
Query:    1 MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARRDAEESHTAVGVHRLAPRPGEPMESMGGRGMLEQNRTSSSRRGREGGYELVPTRGEDQVREDRGGGVSEPVGIRRVVEG 144
            MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARRDAEESHTAVGVHRLAPRPGEPM   GGRG LEQNRTSSSRRGREG YELVPTRGED++RE RGGGVS+PVGIRRVVEG
Sbjct:  215 MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARRDAEESHTAVGVHRLAPRPGEPM---GGRGTLEQNRTSSSRRGREGEYELVPTRGEDELREGRGGGVSKPVGIRRVVEG 355          
BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Match: D8LUD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUD3_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 6.430e-34
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
Query:    1 MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR 66
            MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR
Sbjct:   94 MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR 159          
BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Match: A0A0P1A7H8_PLAHL (ATPase, vacuolar ER assembly factor, Vma12 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7H8_PLAHL)

HSP 1 Score: 54.7 bits (130), Expect = 3.450e-6
Identity = 26/66 (39.39%), Postives = 49/66 (74.24%), Query Frame = 0
Query:    1 MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR 66
            +GANMV+A  T FI  Y+ ++ +   N++ RLV GLVGA+F+M++E+++F+TR+ K + +  ++++
Sbjct:  148 IGANMVMARLTAFIAVYFLARNLT-QNETTRLVAGLVGAIFMMIIEMILFITRAAKIESIEHESKK 212          
BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Match: A0A5D6XW23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW23_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.730e-6
Identity = 28/66 (42.42%), Postives = 49/66 (74.24%), Query Frame = 0
Query:    1 MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR 66
            +GANMV+A  T FI  Y  ++ ++ D+++ R+VIGLVGA+ +M++E+++F+TR+ K + +  D RR
Sbjct:  146 IGANMVMARVTAFIALYMVAR-VLTDSETMRVVIGLVGAIVMMVIEMVLFITRAAKYEVLERDQRR 210          
BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Match: A0A1V9Y9U8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9U8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.040e-5
Identity = 25/68 (36.76%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    1 MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARRDA 68
            +GANM+ A+ T F ++Y+ S+ +  DN++ RL++GL   + +M+VE+++F+ RS K +E+    R+ A
Sbjct:  103 IGANMIAAMATAFFVAYYISRSLT-DNETTRLLVGLAATVAMMVVEMVLFIARSTKQEELARRQRKGA 169          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KIJ2_9PHAE3.070e-8193.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUD3_ECTSI6.430e-34100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0P1A7H8_PLAHL3.450e-639.39ATPase, vacuolar ER assembly factor, Vma12 n=1 Tax... [more]
A0A5D6XW23_9STRA4.730e-642.42Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9Y9U8_9STRA1.040e-536.76Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021013ATPase, vacuolar ER assembly factor, Vma12PFAMPF11712Vma12coord: 4..56
e-value: 8.2E-6
score: 25.9
IPR021013ATPase, vacuolar ER assembly factor, Vma12PANTHERPTHR31394FAMILY NOT NAMEDcoord: 2..73
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 26..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..51
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 52..144
NoneNo IPR availableTMHMMTMhelixcoord: 5..25
NoneNo IPR availableTMHMMTMhelixcoord: 32..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12961contigEcto-sp13_S_contig12961:3762..4809 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12961.2431.1mRNA_Ecto-sp13_S_contig12961.2431.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12961 2413..4872 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12961.2431.1 ID=prot_Ecto-sp13_S_contig12961.2431.1|Name=mRNA_Ecto-sp13_S_contig12961.2431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVF
VTRSLKADEVLEDARRDAEESHTAVGVHRLAPRPGEPMESMGGRGMLEQN
RTSSSRRGREGGYELVPTRGEDQVREDRGGGVSEPVGIRRVVEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021013ATPase_Vma12