mRNA_Ecto-sp13_S_contig12961.2431.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12961.2431.1
Unique NamemRNA_Ecto-sp13_S_contig12961.2431.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Match: A0A6H5KIJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ2_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 1.610e-89
Identity = 154/165 (93.33%), Postives = 158/165 (95.76%), Query Frame = 1 
Query:    1 LYRAPRETVRDIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARRDAEESHTAVGVHRLAPRPGEPMESMGGRGMLEQNRTSSSRRGREGGYELVPTRGEDQVREDRGGGVSEPVGIRRVVEG 495
            + RAPRETVRDIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARRDAEESHTAVGVHRLAPRPGEPM   GGRG LEQNRTSSSRRGREG YELVPTRGED++RE RGGGVS+PVGIRRVVEG
Sbjct:  194 IQRAPRETVRDIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARRDAEESHTAVGVHRLAPRPGEPM---GGRGTLEQNRTSSSRRGREGEYELVPTRGEDELREGRGGGVSKPVGIRRVVEG 355
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BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Match: D8LUD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUD3_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 1.190e-43
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1 
Query:    1 LYRAPRETVRDIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR 261
            + RAPRETVRDIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR
Sbjct:   73 IQRAPRETVRDIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR 159
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BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Match: A0A5D6XW23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW23_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.720e-6
Identity = 30/79 (37.97%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:   25 VRDIQASFKFQVGMGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR 261
            +   Q S +  + +GANMV+A  T FI  Y  ++ ++ D+++ R+VIGLVGA+ +M++E+++F+TR+ K + +  D RR
Sbjct:  133 LEQFQTSTRQHLSIGANMVMARVTAFIALYMVAR-VLTDSETMRVVIGLVGAIVMMVIEMVLFITRAAKYEVLERDQRR 210
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BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Match: A0A0P1A7H8_PLAHL (ATPase, vacuolar ER assembly factor, Vma12 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7H8_PLAHL)

HSP 1 Score: 57.4 bits (137), Expect = 1.240e-5
Identity = 27/75 (36.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   37 QASFKFQVGMGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVFVTRSLKADEVLEDARR 261
            Q + +  + +GANMV+A  T FI  Y+ ++ +   N++ RLV GLVGA+F+M++E+++F+TR+ K + +  ++++
Sbjct:  139 QTNIRQHLSIGANMVMARLTAFIAVYFLARNLT-QNETTRLVAGLVGAIFMMIIEMILFITRAAKIESIEHESKK 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12961.2431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KIJ2_9PHAE1.610e-8993.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUD3_ECTSI1.190e-4397.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6XW23_9STRA6.720e-637.97Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0P1A7H8_PLAHL1.240e-536.00ATPase, vacuolar ER assembly factor, Vma12 n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12961contigEcto-sp13_S_contig12961:2413..4872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1847
Hectar predicted targeting categorysignal peptide
Exons3
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462693.5324183-UTR-Ecto-sp13_S_contig12961:2412..37611681462693.5324183-UTR-Ecto-sp13_S_contig12961:2412..3761Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12961 2413..3761 -
1681462693.578461-UTR-Ecto-sp13_S_contig12961:4809..48721681462693.578461-UTR-Ecto-sp13_S_contig12961:4809..4872Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12961 4810..4872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462693.5483825-CDS-Ecto-sp13_S_contig12961:3761..39981681462693.5483825-CDS-Ecto-sp13_S_contig12961:3761..3998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12961 3762..3998 -
1681462693.5588844-CDS-Ecto-sp13_S_contig12961:4301..44091681462693.5588844-CDS-Ecto-sp13_S_contig12961:4301..4409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12961 4302..4409 -
1681462693.5688684-CDS-Ecto-sp13_S_contig12961:4719..48091681462693.5688684-CDS-Ecto-sp13_S_contig12961:4719..4809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12961 4720..4809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12961.2431.1prot_Ecto-sp13_S_contig12961.2431.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12961 3762..4809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12961.2431.1

>prot_Ecto-sp13_S_contig12961.2431.1 ID=prot_Ecto-sp13_S_contig12961.2431.1|Name=mRNA_Ecto-sp13_S_contig12961.2431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MGANMVVAVFTTFIISYWASKFIVGDNKSHRLVIGLVGAMFIMLVELLVF
VTRSLKADEVLEDARRDAEESHTAVGVHRLAPRPGEPMESMGGRGMLEQN
RTSSSRRGREGGYELVPTRGEDQVREDRGGGVSEPVGIRRVVEG*
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mRNA from alignment at Ecto-sp13_S_contig12961:2413..4872-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12961.2431.1 ID=mRNA_Ecto-sp13_S_contig12961.2431.1|Name=mRNA_Ecto-sp13_S_contig12961.2431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2460bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12961:2413..4872- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTACAGGGCACCGCGAGAGACCGTTCGAGATATCCAGGCGTCATTCAA
GTTTCAGGTTGGCATGGGGGCCAACATGGTGGTCGCGGTGTTCACGACGT
TTATTATCAGCTATTGGGCCAGCAAATTCATTGTCGGGGACAACAAATCG
CACGTGAGCAAGTGGGAGAGAGAGAGAAAGAAGGAGAGGGAGGAAGGGGG
GGAGGGTGCGTACTGTCCACGTAACTCAGCACCAACTCGTGCCGATCCGG
TCGGCCTACTCACCGCTCCCAATACTTAGGAACATGTATGTTGTGGGAAA
TGGACCTGGCGGAAGGAGACAAACTCTTTATGTCGTGCCTCCCCTCCCCC
CCCCCCCCTCCCCCCTCCCGATCCTTGGTTGGGGTTTCATTTCGTTCTTC
CCTGCTCTTCTACCTCCTGCGAAACGATTCTACGCACACTCGCGGCCGCG
GCCGGCACATCAGCGACTAGTAATCGGGCTCGTGGGCGCCATGTTCATCA
TGCTGGTGGAGTTGCTGGTGTTTGTGACGCGATCTCTCAAGGCCGACGAA
GTATTGGAGGACGCACGACGGGTACGAGTTGTACGAAGCAAAGAAAGCGG
TTACGGGTCGCAGTCACGTCCGAAGAAAGGACGCTTCGCGATCGCACTTG
GTTGTTGGCGTCGATTTGCAAGGAATGTACCGTGGCCTGGTCTGATTATC
GCGCCTCTTTCGTGGAGTTACTTCGGTGGGATGACGAAATGATGTTGGCG
AGAACGCTATGTTTGGTCCATTCGGCTAACGCAGTCAGTCGCAAACGCTG
AAGCGCAAGCACTGCTACTGACACAAACCGATGCCCCCCCCCCCATTGCG
ACACATGCGTTACCTGTCGAGAAGGATGCGGAGGAATCGCACACCGCGGT
AGGCGTACATAGATTGGCGCCGCGGCCGGGGGAGCCGATGGAGTCGATGG
GAGGGAGAGGTATGTTAGAGCAGAACCGGACCAGCAGCAGTCGGCGAGGG
CGAGAAGGGGGGTACGAGTTGGTACCCACCAGGGGGGAAGACCAAGTGAG
GGAGGATAGGGGGGGCGGCGTTTCCGAACCTGTCGGGATCAGGAGAGTCG
TCGAAGGCTGATCCGACTGGCATGAACCGCAAAAAGGACGCCGTGATTTT
CTCCTGGTTTTGGTGTCAACGGGTAGGCTTAGCCGTGACTACAGCGGCAG
AAGCACGTGACGTGGGTCGGGGTTCCCCCCCCTTCCCCCCCCACTCCCCA
TCCCATCAACAAGGACTCGCCTTTCCGTGGCTGGCCCCCGGTTAAGCGAG
GGGGGTTTCAGTATCCATCACACAGGTGTTGAACCATGCTTCCTGTTGGT
GTTGGCGTGCAGCCGATTCCGAGGAGTTGCTTTAAGTTTTGTGCTATCCA
CCCTGTTTCGGAAGGCGTGGTACCGCATGGGGCGTGTTGTACCATGTTAC
ATGGCGATGTTCAGGGAGAACGGAACCTCGCATGCCCCGAAGCCCCTTTC
CCCCCTCCTCACTCTCCACAACAGCACACTTTGCTGTCTACGTATACGGG
CAAAACAAGCGCCGTTTTCCCCGATGTGAGGAAGAGGGCGAGTAGAGGTG
ACCCCTAAGGTCGTGTATTTGCCAAAGAGCGTTGCCGGGACAAACGCCGT
TTGTTTTGTAGGTGTTCCGAGATTGCCCCCAAGGAACCCTTGACTGCAGT
TTGCACTTCTCCCTCTTCTGCGTAACAACCTGTTCTAGTTTGTTGAGCTT
CAAGCTCCTTCTCTCGGTTGTGCAGCCCTCGGTGATGAAGCTAAACGCGT
GCGTATGGAGATGGGGAGACGGCGGTTTTCGATATGATTGCGTTGTAGCT
GAAACCCCTATTGGGACCCCAGGCAAGTAGATGACGCTTATGAGGGGAGG
CGCACGGATTCATCACTCGCGTGCATGCTCTGTCGAGGCAATGTAAAATT
CAGGTAGTGTACTCTATAGTAGACAGCGACGTTACTGTTCGTTTTGACGT
CATACGGTGTACCTGTTCAAATTTGCCGGATACCATTATTTCTCTTGAAA
ACGTTCCTCGCTAGACGTTGGGACACTGGAAAAGATTCCACCTGAGAACC
TGAAGCGGGTATTTTCGTCATGTTTCCGCAGCTCACGAAACGTGCTCATG
TTGATGAACTACGTGGTGCCATTTTTTTACCAAGTTGTGATTTGTGTCTC
CTGTGTCCTAGGTTTTGGTTGAGAACCGCTGTTGGTTTCAAAGCGTGTTG
CATCGATGGTAACGCGGCGCAACAGGAATCGTGCGTCTGTTTGGACACAG
CAGTGCCCTACGTGCACTCCGGCCTATCAGCAGAATGTACATGAGAAGTG
TCTACCGCTAGTATTCCCGGTTTTAGATCCCATTCCTTTGGCCTTTCCAG
ACTAATTCATTTCTCTTTTACGGTGGGCGAGCTCTAGCCGGATCGCTTCC
GGTACCGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12961:2413..4872-

>mRNA_Ecto-sp13_S_contig12961.2431.1 ID=mRNA_Ecto-sp13_S_contig12961.2431.1|Name=mRNA_Ecto-sp13_S_contig12961.2431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12961:2413..4872- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGCCAACATGGTGGTCGCGGTGTTCACGACGTTTATTATCAGCTA
TTGGGCCAGCAAATTCATTGTCGGGGACAACAAATCGCACCGACTAGTAA
TCGGGCTCGTGGGCGCCATGTTCATCATGCTGGTGGAGTTGCTGGTGTTT
GTGACGCGATCTCTCAAGGCCGACGAAGTATTGGAGGACGCACGACGGGA
TGCGGAGGAATCGCACACCGCGGTAGGCGTACATAGATTGGCGCCGCGGC
CGGGGGAGCCGATGGAGTCGATGGGAGGGAGAGGTATGTTAGAGCAGAAC
CGGACCAGCAGCAGTCGGCGAGGGCGAGAAGGGGGGTACGAGTTGGTACC
CACCAGGGGGGAAGACCAAGTGAGGGAGGATAGGGGGGGCGGCGTTTCCG
AACCTGTCGGGATCAGGAGAGTCGTCGAAGGCTGA
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