prot_Ecto-sp13_S_contig10219.243.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10219.243.1
Unique Nameprot_Ecto-sp13_S_contig10219.243.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length402
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10219.243.1 vs. uniprot
Match: A0A6H5K431_9PHAE (GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K431_9PHAE)

HSP 1 Score: 627 bits (1617), Expect = 2.220e-217
Identity = 341/402 (84.83%), Postives = 348/402 (86.57%), Query Frame = 0 
Query:    1 MRLAPLYLVPPSVTPTAAVAWPCANNHRHAYAPTVRATITAHRLRTTCAAAAAAQDRPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQIELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLVLHATAAVERSGRIPSFSSSDPSAAGDLSSEETTEAAAAARKDRWSDRWSVALFKCNASLCQWDDWNGEALALRTAVRRRGRRWRGRTRGGGSGGRLSSVEDDGDLVHRLLLGYEDYDFERLVPRDKQQXXXXXXXXXXXXXXXXXXXXXXXDAGAGPLRPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGGNSGPRGRDEEERTLGEEGVEGVQGQS 402
            MRLAPL LVPPS+TPTAAV WPC NNHRHA APTVR T  AHRLRTT AAAAAAQD PDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQ ELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNN+DLHEGLAALCVDSGNPEEAAALYRR L LHATA  E SGRI SFSSS+PSAAGDLSS+ETTEAAAAARKDRWS    VALFKCNASLCQWDDWNGEALALRTAVRRRG R RGRTRG GSGGRLSS+EDDGDLVHRLLLGYED DFER VPRDKQQ                        AGAGP RPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGG+ GPRGRDE+ERT G EGV GVQGQS
Sbjct:    1 MRLAPLCLVPPSLTPTAAVVWPCVNNHRHACAPTVRGTTIAHRLRTTYAAAAAAQDGPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNVDLHEGLAALCVDSGNPEEAAALYRRLLGLHATATAEGSGRIRSFSSSNPSAAGDLSSKETTEAAAAARKDRWS----VALFKCNASLCQWDDWNGEALALRTAVRRRGWRRRGRTRGEGSGGRLSSMEDDGDLVHRLLLGYEDDDFERFVPRDKQQSQGNNVGDSNNGGVDGG-------AGAGPSRPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGGDGGPRGRDEDERTSGGEGVGGVQGQS 391
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BLAST of mRNA_Ecto-sp13_S_contig10219.243.1 vs. uniprot
Match: D7FH04_ECTSI (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, family GT41 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH04_ECTSI)

HSP 1 Score: 626 bits (1615), Expect = 2.960e-216
Identity = 338/402 (84.08%), Postives = 343/402 (85.32%), Query Frame = 0 
Query:    1 MRLAPLYLVPPSVTPTAAVAWPCANNHRHAYAPTVRATITAHRLRTTCAAAAAAQDRPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQIELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLVLHATAAVERSGRIPSFSSSDPSAAGDLSSEETTEAAAAARKDRWSDRWSVALFKCNASLCQWDDWNGEALALRTAVRRRGRRWRGRTRGGGSGGRLSSVEDDGDLVHRLLLGYEDYDFERLVPRDKQQXXXXXXXXXXXXXXXXXXXXXXXDAGAGPLRPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGGNSGPRGRDEEERTLGEEGVEGVQGQS 402
            MRLAPLYLVPPSV PTAAV WPCANNHRHAYAPT RAT TAHRLRTTCAAAAAAQD PDNGANTERLLALGRQ TQAGDLESAVYQFE+AASQAPRSAVCQ ELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCL LHA A+ E  GR PSFSSSDPSAAG LSS+E TEAAAAARKDRWS    VALFKCNASLCQWDDWNGEAL LRTAVRRR          GG GGRLSSVEDDGDLVHRLLLGYED DFERLVPRDKQQ                       DAGAGP RPALHPFDSLSAPLSIGDCLAVAQQQT GVL+EARGGNSGPRGRDEE+R LGEEGV GVQGQS
Sbjct:    1 MRLAPLYLVPPSVAPTAAVVWPCANNHRHAYAPTARATTTAHRLRTTCAAAAAAQDGPDNGANTERLLALGRQHTQAGDLESAVYQFEQAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLGLHAAASAEGGGRTPSFSSSDPSAAGHLSSKEATEAAAAARKDRWS----VALFKCNASLCQWDDWNGEALTLRTAVRRREXXXXXXXXXGGVGGRLSSVEDDGDLVHRLLLGYEDDDFERLVPRDKQQRQGNNVGDSDNGGVNG-------DAGAGPSRPALHPFDSLSAPLSIGDCLAVAQQQTSGVLSEARGGNSGPRGRDEEKRILGEEGVGGVQGQS 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10219.243.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K431_9PHAE2.220e-21784.83GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FH04_ECTSI2.960e-21684.08UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 136..188
e-value: 3.0E-6
score: 29.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 50..135
e-value: 3.5E-6
score: 28.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 52..183
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..402
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..20
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 153..186
score: 5.192
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 64..97
score: 8.909
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 64..131
score: 9.261
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 140..186
score: 6.566

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10219contigEcto-sp13_S_contig10219:4300..5943 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10219.243.1mRNA_Ecto-sp13_S_contig10219.243.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10219 4300..5943 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10219.243.1 ID=prot_Ecto-sp13_S_contig10219.243.1|Name=mRNA_Ecto-sp13_S_contig10219.243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=402bp
MRLAPLYLVPPSVTPTAAVAWPCANNHRHAYAPTVRATITAHRLRTTCAA
AAAAQDRPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVC
QIELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADP
NNIDLHEGLAALCVDSGNPEEAAALYRRCLVLHATAAVERSGRIPSFSSS
DPSAAGDLSSEETTEAAAAARKDRWSDRWSVALFKCNASLCQWDDWNGEA
LALRTAVRRRGRRWRGRTRGGGSGGRLSSVEDDGDLVHRLLLGYEDYDFE
RLVPRDKQQVPRDKQQEQGNNVRDSDNGGVDGDAGAGPLRPALHPFDSLS
APLSIGDCLAVAQQQTRGVLAEARGGNSGPRGRDEEERTLGEEGVEGVQG
QS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat
IPR013026TPR-contain_dom