mRNA_Ecto-sp13_S_contig10219.243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10219.243.1
Unique Name	mRNA_Ecto-sp13_S_contig10219.243.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10219.243.1 vs. uniprot
Match: A0A6H5K431_9PHAE (GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K431_9PHAE)

HSP 1 Score: 627 bits (1617), Expect = 2.220e-217
Identity = 341/402 (84.83%), Postives = 348/402 (86.57%), Query Frame = 1

Query:    1 MRLAPLYLVPPSVTPTAAVAWPCANNHRHAYAPTVRATITAHRLRTTCAAAAAAQDRPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQIELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLVLHATAAVERSGRIPSFSSSDPSAAGDLSSEETTEAAAAARKDRWSDRWSVALFKCNASLCQWDDWNGEALALRTAVRRRGRRWRGRTRGGGSGGRLSSVEDDGDLVHRLLLGYEDYDFERLVPRDKQQXXXXXXXXXXXXXXXXXXXXXXXDAGAGPLRPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGGNSGPRGRDEEERTLGEEGVEGVQGQS 1206
            MRLAPL LVPPS+TPTAAV WPC NNHRHA APTVR T  AHRLRTT AAAAAAQD PDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQ ELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNN+DLHEGLAALCVDSGNPEEAAALYRR L LHATA  E SGRI SFSSS+PSAAGDLSS+ETTEAAAAARKDRWS    VALFKCNASLCQWDDWNGEALALRTAVRRRG R RGRTRG GSGGRLSS+EDDGDLVHRLLLGYED DFER VPRDKQQ                        AGAGP RPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGG+ GPRGRDE+ERT G EGV GVQGQS
Sbjct:    1 MRLAPLCLVPPSLTPTAAVVWPCVNNHRHACAPTVRGTTIAHRLRTTYAAAAAAQDGPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNVDLHEGLAALCVDSGNPEEAAALYRRLLGLHATATAEGSGRIRSFSSSNPSAAGDLSSKETTEAAAAARKDRWS----VALFKCNASLCQWDDWNGEALALRTAVRRRGWRRRGRTRGEGSGGRLSSMEDDGDLVHRLLLGYEDDDFERFVPRDKQQSQGNNVGDSNNGGVDGG-------AGAGPSRPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGGDGGPRGRDEDERTSGGEGVGGVQGQS 391

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BLAST of mRNA_Ecto-sp13_S_contig10219.243.1 vs. uniprot
Match: D7FH04_ECTSI (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, family GT41 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH04_ECTSI)

HSP 1 Score: 626 bits (1615), Expect = 2.960e-216
Identity = 338/402 (84.08%), Postives = 343/402 (85.32%), Query Frame = 1

Query:    1 MRLAPLYLVPPSVTPTAAVAWPCANNHRHAYAPTVRATITAHRLRTTCAAAAAAQDRPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQIELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLVLHATAAVERSGRIPSFSSSDPSAAGDLSSEETTEAAAAARKDRWSDRWSVALFKCNASLCQWDDWNGEALALRTAVRRRGRRWRGRTRGGGSGGRLSSVEDDGDLVHRLLLGYEDYDFERLVPRDKQQXXXXXXXXXXXXXXXXXXXXXXXDAGAGPLRPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGGNSGPRGRDEEERTLGEEGVEGVQGQS 1206
            MRLAPLYLVPPSV PTAAV WPCANNHRHAYAPT RAT TAHRLRTTCAAAAAAQD PDNGANTERLLALGRQ TQAGDLESAVYQFE+AASQAPRSAVCQ ELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCL LHA A+ E  GR PSFSSSDPSAAG LSS+E TEAAAAARKDRWS    VALFKCNASLCQWDDWNGEAL LRTAVRRR          GG GGRLSSVEDDGDLVHRLLLGYED DFERLVPRDKQQ                       DAGAGP RPALHPFDSLSAPLSIGDCLAVAQQQT GVL+EARGGNSGPRGRDEE+R LGEEGV GVQGQS
Sbjct:    1 MRLAPLYLVPPSVAPTAAVVWPCANNHRHAYAPTARATTTAHRLRTTCAAAAAAQDGPDNGANTERLLALGRQHTQAGDLESAVYQFEQAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLGLHAAASAEGGGRTPSFSSSDPSAAGHLSSKEATEAAAAARKDRWS----VALFKCNASLCQWDDWNGEALTLRTAVRRREXXXXXXXXXGGVGGRLSSVEDDGDLVHRLLLGYEDDDFERLVPRDKQQRQGNNVGDSDNGGVNG-------DAGAGPSRPALHPFDSLSAPLSIGDCLAVAQQQTSGVLSEARGGNSGPRGRDEEKRILGEEGVGGVQGQS 391

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10219.243.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10219.243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5K431_9PHAE	2.220e-217	84.83	GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7FH04_ECTSI	2.960e-216	84.08	UDP-N-acetylglucosamine--peptide N-acetylglucosami...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10219:4300..5943+
coding sequence from alignment at Ecto-sp13_S_contig10219:4300..5943+

protein sequence of mRNA_Ecto-sp13_S_contig10219.243.1

>prot_Ecto-sp13_S_contig10219.243.1 ID=prot_Ecto-sp13_S_contig10219.243.1|Name=mRNA_Ecto-sp13_S_contig10219.243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=402bp
MRLAPLYLVPPSVTPTAAVAWPCANNHRHAYAPTVRATITAHRLRTTCAA
AAAAQDRPDNGANTERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVC
QIELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADP
NNIDLHEGLAALCVDSGNPEEAAALYRRCLVLHATAAVERSGRIPSFSSS
DPSAAGDLSSEETTEAAAAARKDRWSDRWSVALFKCNASLCQWDDWNGEA
LALRTAVRRRGRRWRGRTRGGGSGGRLSSVEDDGDLVHRLLLGYEDYDFE
RLVPRDKQQVPRDKQQEQGNNVRDSDNGGVDGDAGAGPLRPALHPFDSLS
APLSIGDCLAVAQQQTRGVLAEARGGNSGPRGRDEEERTLGEEGVEGVQG
QS

mRNA from alignment at Ecto-sp13_S_contig10219:4300..5943+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10219.243.1 ID=mRNA_Ecto-sp13_S_contig10219.243.1|Name=mRNA_Ecto-sp13_S_contig10219.243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1644bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10219:4300..5943+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCTAGCTCCTCTCTACCTTGTACCTCCGAGCGTCACCCCAACTGC
AGCCGTGGCATGGCCATGTGCTAACAACCATCGCCATGCCTATGCCCCAA
CCGTAAGAGCTACCATCACCGCCCACCGCCTGCGAACGACGTGCGCAGCA
GCAGCGGCGGCACAAGATCGACCCGACAACGGCGCGAACACCGAGCGACT
GCTCGCCCTCGGCCGGCAACAGACCCAGGCGGGCGATCTAGAGTCCGCCG
TCTACCAGTTCGAGCGGGCCGCTAGCCAGGCCCCGCGGTCGGCGGTGTGT
CAGATAGAGCTTGGCCGAGCTCTCGTCCGATTGGGCAGAGGCCAGGAAGG
GTTCAACTGCCTCGTGGCTGCCTTCGGGATCGATTCTCTGTGTCCGGGCG
TGAAGGACGGCTTCCGCGAGTACTACAGGGCTGAGATTGAGGTTAGGTCC
GTGGTGTATGTTGCCCTTTTGTTGCTGACGCGAGAGTGCTACTTCTGCTG
TGTGCTCCCTGGACGAAAGGATTAGGACGCCGACGAGGACACGTACATAT
CACGAGTCTCTGGTAGGATTTTCATGTAGGAGATTCCGGAGATTGATCCC
TGTTTTCTATTTTCGAACGACTTGTTGACGACTTCCGGACTCCCGAGCCT
GAAGTGCAGTGTTGCAAGCGGAGGATATGCGTCTGCTGTGGTGGTGTGCC
CTGCTGCAAACCATGATACACATGTTTTCACCTTCGAAATATACTCGCCC
CCTCCTCCCTGCTCGATCGAATCTGTCCCATGCGGACCCGCGGGAGTCAG
GCCGACCCGAACAACATCGACCTCCATGAAGGCCTGGCGGCGCTCTGCGT
CGACTCCGGCAATCCCGAAGAGGCTGCCGCTCTCTACCGCCGCTGCCTCG
TACTGCACGCGACTGCAGCAGTAGAGCGAAGTGGAAGAATACCAAGCTTT
TCCTCGTCGGACCCTTCCGCAGCAGGTGATCTCTCGTCCGAGGAGACCAC
AGAAGCGGCGGCCGCGGCTCGAAAGGACCGGTGGTCAGTGGCGCTCTTCA
AGTGCAACGCTTCGCTCTGCCAGTGGGACGACTGGGACCACAGAAGCGGC
GGCCGCGGCTCGAAAGGACCGGTGGTCAGTGGCGCTCTTCAAGTGCAACG
CTTCGCTCTGCCAGTGGGACGACTGGAACGGCGAAGCTCTCGCCCTGAGG
ACTGCCGTTCGGCGGCGGGGGCGGCGGTGGCGAGGGCGAACAAGAGGAGG
AGGGTCTGGGGGGCGGTTGTCGTCGGTGGAGGACGATGGCGATCTGGTAC
ATAGACTGTTGCTCGGATACGAAGACTACGACTTCGAACGGTTGGTGCCT
CGAGACAAGCAGCAAGTGCCTCGAGACAAGCAGCAAGAACAGGGCAACAA
TGTTCGTGACAGCGACAACGGTGGCGTTGATGGAGACGCCGGCGCTGGCC
CTTTGCGACCAGCCCTACACCCTTTCGACTCTCTGAGCGCTCCTCTGTCC
ATCGGCGACTGCCTGGCAGTCGCGCAGCAGCAGACCAGAGGGGTGCTGGC
AGAGGCAAGGGGCGGTAACAGCGGGCCTCGAGGCAGAGACGAAGAAGAAA
GAACGTTGGGAGAAGAGGGCGTGGAGGGGGTGCAGGGCCAATCG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10219:4300..5943+

>mRNA_Ecto-sp13_S_contig10219.243.1 ID=mRNA_Ecto-sp13_S_contig10219.243.1|Name=mRNA_Ecto-sp13_S_contig10219.243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10219:4300..5943+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCTAGCTCCTCTCTACCTTGTACCTCCGAGCGTCACCCCAACTGC
AGCCGTGGCATGGCCATGTGCTAACAACCATCGCCATGCCTATGCCCCAA
CCGTAAGAGCTACCATCACCGCCCACCGCCTGCGAACGACGTGCGCAGCA
GCAGCGGCGGCACAAGATCGACCCGACAACGGCGCGAACACCGAGCGACT
GCTCGCCCTCGGCCGGCAACAGACCCAGGCGGGCGATCTAGAGTCCGCCG
TCTACCAGTTCGAGCGGGCCGCTAGCCAGGCCCCGCGGTCGGCGGTGTGT
CAGATAGAGCTTGGCCGAGCTCTCGTCCGATTGGGCAGAGGCCAGGAAGG
GTTCAACTGCCTCGTGGCTGCCTTCGGGATCGATTCTCTGTGTCCGGGCG
TGAAGGACGGCTTCCGCGAGTACTACAGGGCTGAGATTGAGGCCGACCCG
AACAACATCGACCTCCATGAAGGCCTGGCGGCGCTCTGCGTCGACTCCGG
CAATCCCGAAGAGGCTGCCGCTCTCTACCGCCGCTGCCTCGTACTGCACG
CGACTGCAGCAGTAGAGCGAAGTGGAAGAATACCAAGCTTTTCCTCGTCG
GACCCTTCCGCAGCAGGTGATCTCTCGTCCGAGGAGACCACAGAAGCGGC
GGCCGCGGCTCGAAAGGACCGGTGGTCAGACCGGTGGTCAGTGGCGCTCT
TCAAGTGCAACGCTTCGCTCTGCCAGTGGGACGACTGGAACGGCGAAGCT
CTCGCCCTGAGGACTGCCGTTCGGCGGCGGGGGCGGCGGTGGCGAGGGCG
AACAAGAGGAGGAGGGTCTGGGGGGCGGTTGTCGTCGGTGGAGGACGATG
GCGATCTGGTACATAGACTGTTGCTCGGATACGAAGACTACGACTTCGAA
CGGTTGGTGCCTCGAGACAAGCAGCAAGTGCCTCGAGACAAGCAGCAAGA
ACAGGGCAACAATGTTCGTGACAGCGACAACGGTGGCGTTGATGGAGACG
CCGGCGCTGGCCCTTTGCGACCAGCCCTACACCCTTTCGACTCTCTGAGC
GCTCCTCTGTCCATCGGCGACTGCCTGGCAGTCGCGCAGCAGCAGACCAG
AGGGGTGCTGGCAGAGGCAAGGGGCGGTAACAGCGGGCCTCGAGGCAGAG
ACGAAGAAGAAAGAACGTTGGGAGAAGAGGGCGTGGAGGGGGTGCAGGGC
CAATCG