mRNA_Ecto-sp13_S_contig12952.2425.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Match: A0A6H5JE22_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE22_9PHAE) HSP 1 Score: 323 bits (827), Expect = 8.510e-109 Identity = 159/166 (95.78%), Postives = 161/166 (96.99%), Query Frame = 2
Query: 275 GQRMKSDLFAQDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGAPGGGQRTGGRRSYAPPRGHTRMPPILRAFEFATHPRVLMVGIPLACVGYMIFGDNDSEVPGSSVKVDAWLNP 772
GQRMKSDLFAQDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGG P G R GGRRSYAPPRGHTRMPPILRAFEFATHPRVLMVGIPLACVGYMIFGD++SEVPGSSVKVDAWLNP
Sbjct: 45 GQRMKSDLFAQDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGGPEGAHRNGGRRSYAPPRGHTRMPPILRAFEFATHPRVLMVGIPLACVGYMIFGDHESEVPGSSVKVDAWLNP 210
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Match: D7G772_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G772_ECTSI) HSP 1 Score: 268 bits (685), Expect = 9.060e-89 Identity = 134/138 (97.10%), Postives = 135/138 (97.83%), Query Frame = 2
Query: 284 MKSDLFAQDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGAPGGGQRTGGRRSYAPPRGHTRMPPILRAFEFATHPRVLMVGIPLACV 697
MKSDLFAQDHYRVLGVDRNATH TIREAYLRLVKKHHPDVSKGAQSE+QFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGAPGG QRTGGRRSYAPPRGHTRMPPILRAFE ATHPRVLMVGIPLACV
Sbjct: 1 MKSDLFAQDHYRVLGVDRNATHETIREAYLRLVKKHHPDVSKGAQSEDQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGAPGGAQRTGGRRSYAPPRGHTRMPPILRAFELATHPRVLMVGIPLACV 138
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Match: A0A2E0YS86_9GAMM (DNA-binding protein n=1 Tax=Halioglobus sp. TaxID=2024834 RepID=A0A2E0YS86_9GAMM) HSP 1 Score: 79.3 bits (194), Expect = 1.270e-13 Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 2
Query: 305 QDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDE 496
+D+YR+LGVD A I++AY RL +K+HPD++ G ++EE FK +A AWEV+GD ++RA YDE
Sbjct: 4 KDYYRILGVDPEADKADIKKAYRRLARKYHPDLNPGEEAEENFKEVAEAWEVLGDDTRRAEYDE 67
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Match: A0A2V6UCD6_9BACT (Chaperone protein DnaJ n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6UCD6_9BACT) HSP 1 Score: 79.0 bits (193), Expect = 2.300e-13 Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 2
Query: 305 QDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGAPGGGQR 574
+D+YR+LGVDRNA TI+ AY RL +KHHPDV+K + E+FK I+ A+EV+ D KR YD P ++ T+ GG PGGG R
Sbjct: 6 KDYYRILGVDRNADDKTIKSAYRRLARKHHPDVAKTKDATERFKEISEAYEVLSDPEKRRRYDS--LGPDWQRYTQAPP--GGPPGGGFR 91
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Match: A0A2V6Z7Q0_9BACT (Chaperone protein DnaJ n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6Z7Q0_9BACT) HSP 1 Score: 79.0 bits (193), Expect = 2.320e-13 Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 2
Query: 305 QDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGAPGGGQR 574
+D+YR+LGVDR A TI+ AY RL +KHHPDV+KG S ++FK I A+EV+ D KR YD P ++ T+ GG PGGG R
Sbjct: 6 KDYYRILGVDRKADDKTIKSAYRRLARKHHPDVAKGKDSPDRFKEINEAYEVLSDPEKRRRYDS--LGPDWQRYTQAPP--GGGPGGGFR 91
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Match: A0A432QDY7_9DELT (J domain-containing protein n=2 Tax=Desulfobulbaceae TaxID=213121 RepID=A0A432QDY7_9DELT) HSP 1 Score: 78.2 bits (191), Expect = 3.380e-13 Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 2
Query: 305 QDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDE 496
+D+Y +LGVDRNAT I++AY RL +K+HPDVSK A +E++FK + A+EV+ D KRA YD+
Sbjct: 4 RDYYEILGVDRNATQDAIKQAYRRLARKYHPDVSKEADAEKKFKDLGEAYEVLKDPEKRAAYDK 67
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Match: A0A1F7MT13_9BACT (Chaperone protein DnaJ n=1 Tax=Candidatus Rokubacteria bacterium RBG_16_73_20 TaxID=1802100 RepID=A0A1F7MT13_9BACT) HSP 1 Score: 78.2 bits (191), Expect = 4.130e-13 Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 2
Query: 305 QDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGAPGGGQR 574
+D+Y++LGVDRNA TI+ AY RL ++HHPDV+K + E+FK ++ A+EV+ D KR YD P ++H + Q G PGGG R
Sbjct: 4 KDYYKILGVDRNADKKTIKSAYRRLARRHHPDVAKSTDAAERFKELSEAYEVLSDPDKRRRYDA--LGPDWQH---HAQGAGSGPGGGFR 88
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Match: A0A2V6VTD0_9BACT (Chaperone protein DnaJ n=3 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6VTD0_9BACT) HSP 1 Score: 78.2 bits (191), Expect = 4.230e-13 Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 2
Query: 305 QDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDERMADPAFRHRTEYRQRQGGAPGGGQR 574
+D+Y++LGV+R A TI+ AY RL +KHHPDV+KG S E+FK I A+EV+ D KR YD P ++ Y Q GAPGGG R
Sbjct: 4 KDYYQILGVERKADDKTIKSAYRRLARKHHPDVAKGKDSTERFKEINEAYEVLSDPEKRQRYDS--LGPDWQR---YAQAPPGAPGGGFR 88
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Match: A0A3E0NWJ8_9BACT (J domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3E0NWJ8_9BACT) HSP 1 Score: 77.4 bits (189), Expect = 6.760e-13 Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 2
Query: 305 QDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYD 493
QD+Y +LGVDR+A+ I++AY RL ++HHPDV+K A SE++FK I A+EV+ D+ KRA YD
Sbjct: 4 QDYYEILGVDRDASEADIQKAYRRLARQHHPDVNKEAGSEDRFKQIGEAYEVLKDRDKRAKYD 66
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Match: A0A7R8WU93_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WU93_9CRUS) HSP 1 Score: 75.9 bits (185), Expect = 9.320e-13 Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 2
Query: 305 QDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFKAIASAWEVMGDKSKRALYDE 496
+D+Y+VLGV+R+A+ I++AY RL +K+HPDVSK A +E QFK + A+EV+ D KRA YD+
Sbjct: 4 KDYYKVLGVERSASQSDIKKAYRRLARKYHPDVSKEADAEAQFKEVGEAYEVLKDPEKRAAYDQ 67 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12952.2425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12952.2425.1 >prot_Ecto-sp13_S_contig12952.2425.1 ID=prot_Ecto-sp13_S_contig12952.2425.1|Name=mRNA_Ecto-sp13_S_contig12952.2425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp MKSDLFAQDHYRVLGVDRNATHGTIREAYLRLVKKHHPDVSKGAQSEEQFback to top mRNA from alignment at Ecto-sp13_S_contig12952:182..3427- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12952.2425.1 ID=mRNA_Ecto-sp13_S_contig12952.2425.1|Name=mRNA_Ecto-sp13_S_contig12952.2425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12952:182..3427- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12952:182..3427- >mRNA_Ecto-sp13_S_contig12952.2425.1 ID=mRNA_Ecto-sp13_S_contig12952.2425.1|Name=mRNA_Ecto-sp13_S_contig12952.2425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12952:182..3427- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |