prot_Ecto-sp13_S_contig12951.2424.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12951.2424.1
Unique Nameprot_Ecto-sp13_S_contig12951.2424.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length238
Homology
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Match: A0A6H5L9M6_9PHAE (S1 motif domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9M6_9PHAE)

HSP 1 Score: 450 bits (1158), Expect = 4.500e-155
Identity = 224/229 (97.82%), Postives = 226/229 (98.69%), Query Frame = 0
Query:    6 RGDYDDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDVQVS 234
            RGDYDDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAV LARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLH LQDQVPPQQLLKVWTHRMMDAVSAV GVDINHAAEHEHAVG+LQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDVQV+
Sbjct:  127 RGDYDDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVGLARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHPLQDQVPPQQLLKVWTHRMMDAVSAV-GVDINHAAEHEHAVGLLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDVQVN 354          
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI)

HSP 1 Score: 453 bits (1166), Expect = 3.580e-146
Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 0
Query:    6 RGDYDDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDVQV 233
            RGDYDD+DEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAV GVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDVQV
Sbjct: 1084 RGDYDDQDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAV-GVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDVQV 1310          
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Match: A0A7S2A5F9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A5F9_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.210e-51
Identity = 101/225 (44.89%), Postives = 149/225 (66.22%), Query Frame = 0
Query:    8 DYDDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDVQ 232
            D ++ED+E+  WK C++  V+D+VA +F RS RG+KEF DF+VN + A+A+AR+ +DPL E    W+    +G FG EM  L +H LQ  +P   LL+ +   + +AV+ V GVD+N A   +H  G+L FVPGLGPRKA  L++ +  + GGVVPSRK LL+ ++L  +V+TN+  FLRIR+  +L  Q    L P DDTR+HP+ Y   +WA +I  +AL+++
Sbjct:   46 DINNEDDEDFQWK-CNVDIVEDNVAQLFGRSIRGKKEFPDFAVNLKCAIAVARHAKDPLGELTYAWSVASDAGVFGAEMLYLNVHPLQRFLPKPLLLRQYERVLCNAVAEV-GVDVNGACTFDHMHGMLTFVPGLGPRKAAALKQGIDRI-GGVVPSRKDLLARRLLGPVVFTNSVAFLRIRDIDRLNNQF---LFPLDDTRLHPDVYTRNNWAVKIAIDALELE 264          
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Match: A0A7S4R4E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4E1_9STRA)

HSP 1 Score: 185 bits (469), Expect = 6.430e-50
Identity = 101/225 (44.89%), Postives = 149/225 (66.22%), Query Frame = 0
Query:    8 DYDDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDVQ 232
            D ++ED+E+  WK C++  V+D+VA +F RS RG+KEF DF+VN + A+A+AR+ +DPL E    W+    +G FG EM  L +H LQ  +P   LL+ +   + +AV+ V GVD+N A   +H  G+L FVPGLGPRKA  L++ +  + GGVVPSRK LL+ ++L  +V+TN+  FLRIR+  +L  Q    L P DDTR+HP+ Y   +WA +I  +AL+++
Sbjct: 1246 DINNEDDEDFQWK-CNVDIVEDNVAQLFGRSIRGKKEFPDFAVNLKCAIAVARHAKDPLGELTYAWSVASDAGVFGAEMLYLNVHPLQRFLPKPLLLRQYERVLCNAVAEV-GVDVNGACTFDHMHGMLTFVPGLGPRKAAALKQGIDRI-GGVVPSRKDLLARRLLGPVVFTNSVAFLRIRDIDRLNNQF---LFPLDDTRLHPDVYTRNNWAVKIAIDALELE 1464          
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Match: B7G582_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G582_PHATC)

HSP 1 Score: 171 bits (434), Expect = 3.140e-45
Identity = 97/230 (42.17%), Postives = 138/230 (60.00%), Query Frame = 0
Query:    9 YDDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDVQVSTALD 238
            +DD+DE +  WK C++  + D VA +F RS RG KEF DF+VN + A+A+ARY QDPL E    W+    +G FG EM  L +H +Q  +P  +LL+ +   + D V+A  G DIN A   +H  G+L FV G+GPRKA  L++ L   LG  +  R+ LL ++++  +VY N   FLRIR   +L EQ    L P DDTR+HP+ Y   +WA +I  +AL+ + S   D
Sbjct: 1154 FDDQDEGD--WK-CNVDLIDDSVAQLFGRSVRGRKEFPDFAVNLKCAIAVARYAQDPLGELTYAWSVASDAGAFGTEMLYLNIHPMQQLLPRTRLLREYERILCD-VTAEVGTDINSACTFDHLRGLLVFVAGMGPRKAANLKQTLSQ-LGSALSRRRDLLENRMIGPVVYNNLVAFLRIRRVDQLVEQF---LHPLDDTRLHPDVYLRHNWAIKIAFDALEREDSKTKD 1375          
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Match: A0A836C842_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C842_9STRA)

HSP 1 Score: 170 bits (430), Expect = 9.930e-45
Identity = 90/154 (58.44%), Postives = 110/154 (71.43%), Query Frame = 0
Query:   78 SSGNFGHEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDV 231
            SSG FGHEM SLRLH LQ +V   QLL+    R++DAV+ V GVDIN A E EH  G+LQFV GLGPRKA  LR  +   LGGV+ SR+ LL  ++L    YTNAA FLRIR+RG+L E+ +  ++PFDDTR+H ECY    WA++ICANALDV
Sbjct:  292 SSGEFGHEMLSLRLHPLQGEVTKGQLLRALEQRLIDAVNEV-GVDINMACEKEHMRGMLQFVAGLGPRKAAALRTGISQSLGGVINSRRQLLDRKLLGPSTYTNAASFLRIRKRGRLEERDD--INPFDDTRIHTECYIKHHWARQICANALDV 442          
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Match: A0A1E7F5U6_9STRA (S1 motif domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5U6_9STRA)

HSP 1 Score: 162 bits (410), Expect = 4.950e-42
Identity = 90/224 (40.18%), Postives = 136/224 (60.71%), Query Frame = 0
Query:   10 DDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQ---LLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALD 230
            DDED+E+  WK C+   + D V+ VF  S RG+KEF D +   R A+++ARY +DPL E A  W     +G FG E+  + +H +Q  +   +   LLK +   + D V+ V G D+N   E+ H  G+L FVPGLGPRKA  L++R+   LG +VP+R++LL ++ +  +VY N+  FLRI    + + Q + QL P D+TR+HP+ Y   +WA +I  +AL+
Sbjct:  690 DDEDDEDFDWK-CNADLIDDSVSQVFGHSPRGKKEFPDHAPALRVAISIARYGKDPLAELAYSWNVASDTGLFGTELLYINIHPMQQLLKRFKGPLLLKHYERALCDVVAEV-GADVNKCCEYNHLQGLLTFVPGLGPRKAAYLKQRVEQ-LGSLVPTRRSLLENRFMGPVVYNNSIAFLRIHHVDEHSSQ-QVQLHPLDNTRLHPDVYQKNNWASKIATDALE 909          
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Match: A0A7S3HQM4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQM4_9STRA)

HSP 1 Score: 153 bits (387), Expect = 4.360e-39
Identity = 95/230 (41.30%), Postives = 132/230 (57.39%), Query Frame = 0
Query:    9 YDDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVP--PQQLLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALDVQVSTA 236
            Y DEDEE   ++   +  VKD++A +F  S R +K F +    + AAV LARY Q+PL E+   W    S   FG+E+  L +H L+  +    Q LL     R++DAV  V GVDIN A  ++H   +L FV GLG RKA  LR+ +      +  SR  LL  ++L S V+TNAAGF+RI          +  +DP D+TR+HPECY T D+A +ICA+AL+V  S +
Sbjct:    5 YADEDEEFVPYR-AQVMIVKDELARIFQNSDRRKKMFPELQPAEAAAVCLARYAQEPLAEYCSAWNAASSQETFGYELLFLPVHPLKSLLKGAQQALLNALECRLVDAVCDV-GVDINKACAYDHIAPMLAFVGGLGLRKADALRQNIRKSAKAIT-SRNDLLLRKLLGSCVWTNAAGFVRI---------CDNVMDPLDNTRIHPECYTTHDFATKICADALEVAHSNS 222          
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Match: A0A448YUZ9_9STRA (S1 motif domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUZ9_9STRA)

HSP 1 Score: 153 bits (386), Expect = 8.400e-39
Identity = 84/223 (37.67%), Postives = 133/223 (59.64%), Query Frame = 0
Query:   11 DEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQ---LLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALD 230
            DED++E++  +C+   + D V+ VF  S RG+KEF D +   R A+++ARY +DPL E A  W     +G FG E+F   ++ +Q  +   +   LL+ +   + D V+ V G D+N   E+ H  G+L FVPGLGPRKA  L++++   LG  VP+R++LL ++ +  +VY N+  FLRI    +     + QL P D+TR+HP+ Y   +WA +I  +AL+
Sbjct: 1172 DEDDDEDLDWKCNADLIDDSVSQVFGHSPRGKKEFPDHAPALRVAISIARYGKDPLAELAYAWNVASDTGLFGTELFYFNINPMQQLLKRFKGPLLLRHYERALCDVVAEV-GADVNKCCEYSHLQGLLTFVPGLGPRKAAFLKQKVEQ-LGSSVPTRRSLLENRFMGPVVYNNSIAFLRIHHFDERTSH-QVQLHPLDNTRLHPDVYQKNNWASKIATDALE 1391          
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Match: A0A7S4ELD9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ELD9_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.110e-38
Identity = 88/225 (39.11%), Postives = 134/225 (59.56%), Query Frame = 0
Query:   10 DDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQ---LLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKLRERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRE-RGKLAEQLEGQLDPFDDTRVHPECYNTQDWAQRICANALD 230
            DD+DEE+  WK C+   + D V+ VF  S RG+KEF D +   R A+++ARY +DPL E A  W     +G FG E+    ++ +Q  +   +   LL+ +   + DAV+AV G D+N   E+ H  G+L FVPGLGPRKA  L++++   LG  V +R++LL ++ +  +VY N+  FLRI       + Q+  QL P D+TR+HP+ Y   +WA +I  +AL+
Sbjct: 1148 DDDDEEDLDWK-CNADLIDDSVSQVFGHSPRGKKEFPDHASALRVAISIARYGKDPLAELAYAWNVASDTGLFGTELLYFNINPMQQLLKRFKGPLLLRHYERALCDAVAAV-GADVNKCCEYSHLQGLLTFVPGLGPRKAAFLKQKVEQ-LGSSVATRRSLLENRYMGPVVYNNSIAFLRIHHFEEHNSHQI--QLHPLDNTRLHPDVYQKNNWASKIATDALE 1367          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12951.2424.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9M6_9PHAE4.500e-15597.82S1 motif domain-containing protein n=1 Tax=Ectocar... [more]
D8LQN4_ECTSI3.580e-14699.12GTB1 RNA binding / hydrolase, acting on ester bond... [more]
A0A7S2A5F9_9STRA2.210e-5144.89Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4R4E1_9STRA6.430e-5044.89Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
B7G582_PHATC3.140e-4542.17Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A836C842_9STRA9.930e-4558.44S1 motif domain-containing protein n=1 Tax=Tribone... [more]
A0A1E7F5U6_9STRA4.950e-4240.18S1 motif domain-containing protein n=1 Tax=Fragila... [more]
A0A7S3HQM4_9STRA4.360e-3941.30Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A448YUZ9_9STRA8.400e-3937.67S1 motif domain-containing protein n=1 Tax=Pseudo-... [more]
A0A7S4ELD9_9STRA2.110e-3839.11Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032706Transcription elongation factor Spt6, helix-hairpin-helix motifPFAMPF14635HHH_7coord: 85..188
e-value: 5.2E-19
score: 68.5
IPR028231Transcription elongation factor Spt6, YqgF domainPFAMPF14639YqgFcoord: 18..72
e-value: 2.8E-10
score: 40.2
NoneNo IPR availableGENE3D1.10.150.850coord: 109..190
e-value: 6.6E-14
score: 53.9
IPR037027YqgF/RNase H-like domain superfamilyGENE3D3.30.420.140coord: 3..77
e-value: 1.1E-9
score: 40.0
IPR017072Transcription elongation factor Spt6PANTHERPTHR10145TRANSCRIPTION ELONGATION FACTOR SPT6coord: 14..233
IPR010994RuvA domain 2-likeSUPERFAMILY47781RuvA domain 2-likecoord: 96..189
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 20..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12951contigEcto-sp13_S_contig12951:1211..3051 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12951.2424.1mRNA_Ecto-sp13_S_contig12951.2424.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12951 1211..3051 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12951.2424.1 ID=prot_Ecto-sp13_S_contig12951.2424.1|Name=mRNA_Ecto-sp13_S_contig12951.2424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
MVRWHRGDYDDEDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSV
NQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPP
QQLLKVWTHRMMDAVSAVAGVDINHAAEHEHAVGVLQFVPGLGPRKAFKL
RERLGTVLGGVVPSRKALLSSQVLKSLVYTNAAGFLRIRERGKLAEQLEG
QLDPFDDTRVHPECYNTQDWAQRICANALDVQVSTALD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032706Spt6_HHH
IPR028231Spt6_YqgF
IPR037027YqgF/RNaseH-like_dom_sf
IPR017072TF_Spt6
IPR010994RuvA_2-like
IPR012337RNaseH-like_sf