prot_Ecto-sp13_S_contig1295.2421.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1295.2421.1
Unique Nameprot_Ecto-sp13_S_contig1295.2421.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length341
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1295.2421.1 vs. uniprot
Match: D7FNL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL7_ECTSI)

HSP 1 Score: 585 bits (1508), Expect = 1.490e-209
Identity = 303/340 (89.12%), Postives = 308/340 (90.59%), Query Frame = 0 
Query:    1 MASQRHQRHRQCPALAFLVAMSLAGSSMSIAPPLAARGSGAARPPLCGVTSSSWSPLRCVSKTSPTAPRAAXXXXXXXXXXXXXXXXXXGIDELVGIDEFRANKAERDRIEGQVEDGRRATVEAAAAPVAGVGKGVGLGLEGAIFPNDAFPGSPVTKEITLQDTKLENGQPEPMVGFWKLYGSTGDGEDLSSRVILRADGQVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRTSRARLRFTIVLSFEKKQQLEMDGTVLMVDGVVETGGLLSEGNDGEGAGEVELGGEPKPQVFGGVFKRNGEALDDGEGDFSMMKVPAGEDKLVATVGSQQKRFW 340
            MA+QRHQRHRQCPALAFLVAMSL GSSMS APPLAARGSGAARP LCGVTSSS SPLRCVS TSPTAPRAA                  GIDELVGIDEFRANKAERDR+E QVEDGRRA VEAAAAPVAGVGKGVGLGLEGAIFPNDAFPGSPVTKEITLQDTKLENGQPE MVGFWKLYGSTGDGEDLS RVILRADGQVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRT+RARLRFTIVLSFEKKQQLEMDGTVLMVDG+ E GGLLSEGNDGEGAGE ELGGEPKPQVFGGVFKRNGE +DDGEGDF MMKVPAGEDKLVATVGSQQKRFW
Sbjct:    2 MANQRHQRHRQCPALAFLVAMSLTGSSMSFAPPLAARGSGAARPSLCGVTSSSRSPLRCVSNTSPTAPRAAAEAAGDQDDDRSSANDDDGIDELVGIDEFRANKAERDRLEEQVEDGRRAVVEAAAAPVAGVGKGVGLGLEGAIFPNDAFPGSPVTKEITLQDTKLENGQPEAMVGFWKLYGSTGDGEDLSGRVILRADGQVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRTNRARLRFTIVLSFEKKQQLEMDGTVLMVDGMGEMGGLLSEGNDGEGAGEAELGGEPKPQVFGGVFKRNGEVMDDGEGDFGMMKVPAGEDKLVATVGSQQKRFW 341
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BLAST of mRNA_Ecto-sp13_S_contig1295.2421.1 vs. uniprot
Match: A0A835YWQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWQ6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.030e-25
Identity = 75/191 (39.27%), Postives = 101/191 (52.88%), Query Frame = 0 
Query:  161 LQDTKLENGQPEPMVGFWKLYGSTGDGE-DLSSRVILRADGQVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRTSRA---RLRFTIVLSFEKKQQLEMDGTVLMVDGVVETGGLLSEGNDGEGAGEVELGGEPKPQVFGGVFKRNGEALDDGE------GDFSMMKVPAGEDKLVATVGSQ-QKRFW 340
            L + +L  G PE MVGFW+LY        D + R++LR DGQVVGGP V  T    WSDP G++  GGRWAVY D    +A   RLR T+  + ++   L +DG +L            SE +  +G G V++     P+V G V +R   A+ DG       G+FSM+KV     KL A VG+Q  +R W
Sbjct:   61 LGNDQLHQGNPESMVGFWQLYADCDAARVDPADRLVLRPDGQVVGGPVVNPTAVTSWSDPAGVRACGGRWAVYEDTAEGKAGISRLRMTLFANPQRTAALVLDGIIL----------CASEYDRNKG-GMVDV-----PRVLGDVSQR---AIRDGRQQHRQSGEFSMLKVTTDHVKLKAEVGNQGPQRLW 232
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1295.2421.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNL7_ECTSI1.490e-20989.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YWQ6_9STRA4.030e-2539.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..340
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..41
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.611
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1295contigEcto-sp13_S_contig1295:2942..4714 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1295.2421.1mRNA_Ecto-sp13_S_contig1295.2421.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1295 2942..4717 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1295.2421.1 ID=prot_Ecto-sp13_S_contig1295.2421.1|Name=mRNA_Ecto-sp13_S_contig1295.2421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp
MASQRHQRHRQCPALAFLVAMSLAGSSMSIAPPLAARGSGAARPPLCGVT
SSSWSPLRCVSKTSPTAPRAAAAAAGDHDDDRSSADDDDGIDELVGIDEF
RANKAERDRIEGQVEDGRRATVEAAAAPVAGVGKGVGLGLEGAIFPNDAF
PGSPVTKEITLQDTKLENGQPEPMVGFWKLYGSTGDGEDLSSRVILRADG
QVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRTSRARLRFTIVLSF
EKKQQLEMDGTVLMVDGVVETGGLLSEGNDGEGAGEVELGGEPKPQVFGG
VFKRNGEALDDGEGDFSMMKVPAGEDKLVATVGSQQKRFW*
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