mRNA_Ecto-sp13_S_contig1295.2421.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1295.2421.1
Unique NamemRNA_Ecto-sp13_S_contig1295.2421.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1295.2421.1 vs. uniprot
Match: D7FNL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL7_ECTSI)

HSP 1 Score: 585 bits (1509), Expect = 1.090e-209
Identity = 303/341 (88.86%), Postives = 309/341 (90.62%), Query Frame = 1 
Query:    1 VMASQRHQRHRQCPALAFLVAMSLAGSSMSIAPPLAARGSGAARPPLCGVTSSSWSPLRCVSKTSPTAPRAAXXXXXXXXXXXXXXXXXXGIDELVGIDEFRANKAERDRIEGQVEDGRRATVEAAAAPVAGVGKGVGLGLEGAIFPNDAFPGSPVTKEITLQDTKLENGQPEPMVGFWKLYGSTGDGEDLSSRVILRADGQVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRTSRARLRFTIVLSFEKKQQLEMDGTVLMVDGVVETGGLLSEGNDGEGAGEVELGGEPKPQVFGGVFKRNGEALDDGEGDFSMMKVPAGEDKLVATVGSQQKRFW 1023
            +MA+QRHQRHRQCPALAFLVAMSL GSSMS APPLAARGSGAARP LCGVTSSS SPLRCVS TSPTAPRAA                  GIDELVGIDEFRANKAERDR+E QVEDGRRA VEAAAAPVAGVGKGVGLGLEGAIFPNDAFPGSPVTKEITLQDTKLENGQPE MVGFWKLYGSTGDGEDLS RVILRADGQVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRT+RARLRFTIVLSFEKKQQLEMDGTVLMVDG+ E GGLLSEGNDGEGAGE ELGGEPKPQVFGGVFKRNGE +DDGEGDF MMKVPAGEDKLVATVGSQQKRFW
Sbjct:    1 MMANQRHQRHRQCPALAFLVAMSLTGSSMSFAPPLAARGSGAARPSLCGVTSSSRSPLRCVSNTSPTAPRAAAEAAGDQDDDRSSANDDDGIDELVGIDEFRANKAERDRLEEQVEDGRRAVVEAAAAPVAGVGKGVGLGLEGAIFPNDAFPGSPVTKEITLQDTKLENGQPEAMVGFWKLYGSTGDGEDLSGRVILRADGQVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRTNRARLRFTIVLSFEKKQQLEMDGTVLMVDGMGEMGGLLSEGNDGEGAGEAELGGEPKPQVFGGVFKRNGEVMDDGEGDFGMMKVPAGEDKLVATVGSQQKRFW 341
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BLAST of mRNA_Ecto-sp13_S_contig1295.2421.1 vs. uniprot
Match: A0A835YWQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWQ6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.110e-25
Identity = 75/191 (39.27%), Postives = 101/191 (52.88%), Query Frame = 1 
Query:  484 LQDTKLENGQPEPMVGFWKLYGSTGDGE-DLSSRVILRADGQVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRTSRA---RLRFTIVLSFEKKQQLEMDGTVLMVDGVVETGGLLSEGNDGEGAGEVELGGEPKPQVFGGVFKRNGEALDDGE------GDFSMMKVPAGEDKLVATVGSQ-QKRFW 1023
            L + +L  G PE MVGFW+LY        D + R++LR DGQVVGGP V  T    WSDP G++  GGRWAVY D    +A   RLR T+  + ++   L +DG +L            SE +  +G G V++     P+V G V +R   A+ DG       G+FSM+KV     KL A VG+Q  +R W
Sbjct:   61 LGNDQLHQGNPESMVGFWQLYADCDAARVDPADRLVLRPDGQVVGGPVVNPTAVTSWSDPAGVRACGGRWAVYEDTAEGKAGISRLRMTLFANPQRTAALVLDGIIL----------CASEYDRNKG-GMVDV-----PRVLGDVSQR---AIRDGRQQHRQSGEFSMLKVTTDHVKLKAEVGNQGPQRLW 232
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1295.2421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNL7_ECTSI1.090e-20988.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YWQ6_9STRA4.110e-2539.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1295contigEcto-sp13_S_contig1295:2942..4717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1026
Hectar predicted targeting categorychloroplast
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005010.1
Cds size1023
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462692.504648-CDS-Ecto-sp13_S_contig1295:2941..33611681462692.504648-CDS-Ecto-sp13_S_contig1295:2941..3361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1295 2942..3361 -
1681462692.5168588-CDS-Ecto-sp13_S_contig1295:3675..37411681462692.5168588-CDS-Ecto-sp13_S_contig1295:3675..3741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1295 3676..3741 -
1681462692.527718-CDS-Ecto-sp13_S_contig1295:4177..47141681462692.527718-CDS-Ecto-sp13_S_contig1295:4177..4714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1295 4178..4714 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462692.5405533-UTR-Ecto-sp13_S_contig1295:4714..47171681462692.5405533-UTR-Ecto-sp13_S_contig1295:4714..4717Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1295 4715..4717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1295.2421.1prot_Ecto-sp13_S_contig1295.2421.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1295 2942..4714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1295.2421.1

>prot_Ecto-sp13_S_contig1295.2421.1 ID=prot_Ecto-sp13_S_contig1295.2421.1|Name=mRNA_Ecto-sp13_S_contig1295.2421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp
MASQRHQRHRQCPALAFLVAMSLAGSSMSIAPPLAARGSGAARPPLCGVT
SSSWSPLRCVSKTSPTAPRAAAAAAGDHDDDRSSADDDDGIDELVGIDEF
RANKAERDRIEGQVEDGRRATVEAAAAPVAGVGKGVGLGLEGAIFPNDAF
PGSPVTKEITLQDTKLENGQPEPMVGFWKLYGSTGDGEDLSSRVILRADG
QVVGGPTVRKTPGVEWSDPEGLQPVGGRWAVYSDKRTSRARLRFTIVLSF
EKKQQLEMDGTVLMVDGVVETGGLLSEGNDGEGAGEVELGGEPKPQVFGG
VFKRNGEALDDGEGDFSMMKVPAGEDKLVATVGSQQKRFW*
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mRNA from alignment at Ecto-sp13_S_contig1295:2942..4717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1295.2421.1 ID=mRNA_Ecto-sp13_S_contig1295.2421.1|Name=mRNA_Ecto-sp13_S_contig1295.2421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1295:2942..4717- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGATGGCAAGCCAACGGCATCAACGACATCGGCAATGCCCTGCGCTCGC
GTTTCTAGTTGCAATGAGCTTGGCTGGTTCGTCCATGTCGATCGCCCCAC
CACTAGCCGCTAGAGGTAGTGGTGCGGCACGACCACCCCTATGCGGCGTA
ACATCAAGCAGCTGGTCACCGTTGAGGTGTGTTTCAAAGACCTCACCAAC
GGCTCCTCGAGCAGCAGCAGCAGCAGCCGGCGATCATGATGACGACAGAA
GTAGCGCCGACGATGACGATGGCATTGATGAACTCGTTGGCATCGACGAG
TTCAGGGCAAACAAGGCAGAGAGGGATCGAATAGAAGGACAAGTTGAAGA
CGGACGGCGTGCGACCGTCGAAGCTGCGGCAGCACCCGTAGCTGGCGTGG
GGAAGGGTGTGGGGCTAGGCTTGGAAGGGGCAATATTCCCGAACGACGCG
TTCCCGGGCTCGCCAGTCACCAAGGAGATTACCCTCCAGGATACCAAGCT
CGAGAATGGACAACCTGAGCCAATGGTCGGGTTTTGGAAGGTAATAACAA
TGATCTCATGAGCCGATGTCGAACAGTAGAACAGGGGTGGGAGGGTGAAC
CAGATTCGACATGTTCTCGATACAGCAGTAGCATGCATGCACGAGCAGGG
ATATATAGTCGATACGAAGGACTCCCCCCAATCAAATGTTTTCTTTTTAT
GCACCACCAGGCACATTTTTGCAACGTGCGCACTTGGAATGCACTACAGC
AGCCCATCAGCCCAGTTTCCTTGGACGGCCTGGACGTACTTGACGTGCCG
CTTTTGGTACTGCTGGCCGTACCCCCAACCACATCTGTTTACCCGCCCCC
AAGTTTTCACGACATGTCTCTACACAACGGTGCACTGCAAAACCCTTCCC
TTTGCCCCCACCCCGTCGCTTTGTTGTGTTGTGTTGCGCCACGCGCGTGC
TTCGCTCCGCCGACGGTTGTGTTCAGCTGTACGGCAGCACAGGTGATGGC
GAAGACCTAAGCAGCCGCGTTATCCTTCGAGCTGACGGCCAGGTAACACG
AAGGACTGAAGGGGGGCTGTGTGCTGGTGTTTTATTTCATGCAATGGCAG
CAGTAGCAGCAGCGGCAACAGGCGACGCCCCTCGTACAACGCCGCTGCTT
ACTGTGTACTGCGGCGGTGTACACGGCGGGGCCTTCGACGTCCGTGCCCG
CGCGCTGCTGGTGTGTGTTACTCTCTTTTTATCGTGTCGTGGACGATGCA
CTTATGTTCGTCCGCGTATAAGGATCCCACTCTACGTTTCGTCTGATTTG
CTCGTGGTCTATCGCTCCTTGTGGGTGCGCCGTATCCCTCCCCGCCGGAT
TACAAGGTGGTGGGCGGCCCAACCGTCAGAAAAACGCCTGGCGTCGAGTG
GAGCGACCCGGAGGGCCTCCAGCCCGTGGGCGGAAGGTGGGCGGTCTACT
CGGACAAGAGGACCAGCAGGGCGCGCCTCAGGTTCACCATCGTGCTGTCC
TTCGAGAAGAAGCAGCAGCTGGAGATGGACGGAACGGTGTTGATGGTAGA
CGGCGTGGTCGAGACGGGGGGGCTGCTGTCGGAGGGAAATGACGGGGAGG
GGGCGGGGGAAGTAGAGTTGGGTGGTGAGCCCAAGCCGCAGGTGTTTGGC
GGCGTCTTCAAGCGCAACGGGGAAGCACTGGACGACGGTGAAGGGGATTT
CAGCATGATGAAGGTGCCCGCCGGAGAGGACAAGCTTGTCGCGACGGTGG
GATCCCAGCAGAAGCGATTTTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1295:2942..4717-

>mRNA_Ecto-sp13_S_contig1295.2421.1 ID=mRNA_Ecto-sp13_S_contig1295.2421.1|Name=mRNA_Ecto-sp13_S_contig1295.2421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1295:2942..4717- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAGCCAACGGCATCAACGACATCGGCAATGCCCTGCGCTCGCGTT
TCTAGTTGCAATGAGCTTGGCTGGTTCGTCCATGTCGATCGCCCCACCAC
TAGCCGCTAGAGGTAGTGGTGCGGCACGACCACCCCTATGCGGCGTAACA
TCAAGCAGCTGGTCACCGTTGAGGTGTGTTTCAAAGACCTCACCAACGGC
TCCTCGAGCAGCAGCAGCAGCAGCCGGCGATCATGATGACGACAGAAGTA
GCGCCGACGATGACGATGGCATTGATGAACTCGTTGGCATCGACGAGTTC
AGGGCAAACAAGGCAGAGAGGGATCGAATAGAAGGACAAGTTGAAGACGG
ACGGCGTGCGACCGTCGAAGCTGCGGCAGCACCCGTAGCTGGCGTGGGGA
AGGGTGTGGGGCTAGGCTTGGAAGGGGCAATATTCCCGAACGACGCGTTC
CCGGGCTCGCCAGTCACCAAGGAGATTACCCTCCAGGATACCAAGCTCGA
GAATGGACAACCTGAGCCAATGGTCGGGTTTTGGAAGCTGTACGGCAGCA
CAGGTGATGGCGAAGACCTAAGCAGCCGCGTTATCCTTCGAGCTGACGGC
CAGGTGGTGGGCGGCCCAACCGTCAGAAAAACGCCTGGCGTCGAGTGGAG
CGACCCGGAGGGCCTCCAGCCCGTGGGCGGAAGGTGGGCGGTCTACTCGG
ACAAGAGGACCAGCAGGGCGCGCCTCAGGTTCACCATCGTGCTGTCCTTC
GAGAAGAAGCAGCAGCTGGAGATGGACGGAACGGTGTTGATGGTAGACGG
CGTGGTCGAGACGGGGGGGCTGCTGTCGGAGGGAAATGACGGGGAGGGGG
CGGGGGAAGTAGAGTTGGGTGGTGAGCCCAAGCCGCAGGTGTTTGGCGGC
GTCTTCAAGCGCAACGGGGAAGCACTGGACGACGGTGAAGGGGATTTCAG
CATGATGAAGGTGCCCGCCGGAGAGGACAAGCTTGTCGCGACGGTGGGAT
CCCAGCAGAAGCGATTTTGGTAG
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