mRNA_Ecto-sp13_S_contig12945.2420.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12945.2420.1
Unique NamemRNA_Ecto-sp13_S_contig12945.2420.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12945.2420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12945contigEcto-sp13_S_contig12945:3856..4610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size757
Hectar predicted targeting categoryother localisation
Exons1
Cds size501
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462692.4045753-UTR-Ecto-sp13_S_contig12945:3855..41091681462692.4045753-UTR-Ecto-sp13_S_contig12945:3855..4109Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12945 3856..4109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462692.4139752-CDS-Ecto-sp13_S_contig12945:4109..46101681462692.4139752-CDS-Ecto-sp13_S_contig12945:4109..4610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12945 4110..4610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12945.2420.1prot_Ecto-sp13_S_contig12945.2420.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12945 4110..4610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12945.2420.1

>prot_Ecto-sp13_S_contig12945.2420.1 ID=prot_Ecto-sp13_S_contig12945.2420.1|Name=mRNA_Ecto-sp13_S_contig12945.2420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
MPTLLKRGHGISSLPSSPALPLLSHELSICFPRGLTTGGDALFGSHRIPS
SVMEETNGVVVAEKNQCGVCIDDGKLLVPPPFPQCPPRVCAGDPCDVRHG
LLLQCRGLLLIHVGSSVVGVWTPTRTNRSASSRLQPLSCSSSHFNIGPAA
VFLPKLKPTSLPLVFWI
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mRNA from alignment at Ecto-sp13_S_contig12945:3856..4610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12945.2420.1 ID=mRNA_Ecto-sp13_S_contig12945.2420.1|Name=mRNA_Ecto-sp13_S_contig12945.2420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=755bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12945:3856..4610+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGCAGTACAACGACGAATGGTTGGGCAGACTCCAGGCGGGTGACGGGG
GGAAGTGTGAACGTCTGCTAGGGCCGACACACCAAATAACGGTCAACCCG
GGCAAGATATTAGAGGACATGATTGGTAGCCAGCCACGATTGCTCGCCCC
GCTGCCTCCCATGGACGCAGTGTTCGTGCATGCATGCCAACGGAGGAGGA
TCCTCAACAACGCCGCTGCTGGGCTAACTCGCGCAAAAACCCTCTCGGCC
ACTGATGCCAACGCTCCTGAAAAGGGGCCACGGCATATCAAGTCTCCCGT
CATCTCCCGCGCTGCCGCTCCTGAGCCACGAGCTCTCCATCTGTTTTCCA
CGAGGACTGACAACGGGAGGCGACGCGCTGTTTGGGTCGCATCGCATCCC
GTCATCAGTCATGGAGGAAACTAATGGAGTGGTCGTGGCTGAGAAGAATC
AGTGTGGGGTATGTATCGATGACGGAAAACTCCTTGTGCCGCCGCCCTTT
CCGCAGTGTCCGCCGAGGGTATGCGCGGGCGACCCCTGCGACGTTCGGCA
TGGACTACTACTGCAATGTCGGGGGCTGCTGCTGATCCATGTTGGATCGT
CCGTGGTCGGCGTATGGACCCCCACACGCACCAATCGGTCAGCTTCTTCC
CGTCTTCAACCACTCTCTTGTTCCTCCTCCCACTTTAACATTGGCCCCGC
AGCCGTTTTCTTACCCAAACTCAAACCCACCTCCTTGCCCTTGGTGTTTT
GGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12945:3856..4610+

>mRNA_Ecto-sp13_S_contig12945.2420.1 ID=mRNA_Ecto-sp13_S_contig12945.2420.1|Name=mRNA_Ecto-sp13_S_contig12945.2420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12945:3856..4610+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAACGCTCCTGAAAAGGGGCCACGGCATATCAAGTCTCCCGTCATC
TCCCGCGCTGCCGCTCCTGAGCCACGAGCTCTCCATCTGTTTTCCACGAG
GACTGACAACGGGAGGCGACGCGCTGTTTGGGTCGCATCGCATCCCGTCA
TCAGTCATGGAGGAAACTAATGGAGTGGTCGTGGCTGAGAAGAATCAGTG
TGGGGTATGTATCGATGACGGAAAACTCCTTGTGCCGCCGCCCTTTCCGC
AGTGTCCGCCGAGGGTATGCGCGGGCGACCCCTGCGACGTTCGGCATGGA
CTACTACTGCAATGTCGGGGGCTGCTGCTGATCCATGTTGGATCGTCCGT
GGTCGGCGTATGGACCCCCACACGCACCAATCGGTCAGCTTCTTCCCGTC
TTCAACCACTCTCTTGTTCCTCCTCCCACTTTAACATTGGCCCCGCAGCC
GTTTTCTTACCCAAACTCAAACCCACCTCCTTGCCCTTGGTGTTTTGGAT
C
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