mRNA_Ecto-sp13_S_contig12943.2417.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12943.2417.1
Unique NamemRNA_Ecto-sp13_S_contig12943.2417.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12943.2417.1 vs. uniprot
Match: D7FH38_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI)

HSP 1 Score: 509 bits (1312), Expect = 2.050e-170
Identity = 357/463 (77.11%), Postives = 375/463 (80.99%), Query Frame = 1 
Query:    1 NRRKSTPFIRRPPPAYGPESVGGMVVFDSAGSGSATXXXXXXXXXXGSRQLHRSPTHPQEAPGGSRGKDSRRGAAPTNGHRDTNGGGIPRERSATRRVDQQQXXXXXXXXXLQRKPRERVREFAEGQYAGKEGDLEGDNTAVGVVIDAAXXXXXXXXXXXXX-SGYKPTPDQYHNQPQSSREKRVSTDVLVGGVAAERPAGRSPTAGGVGIGGGTRGAERSPPPTGKAGSQGGRGVSFSLSPPAGGRVGSNPPQAVRKGGSQSXXXXXXXXXXXXXGDRRAAA--EKHEDXXXXXXXXXXXXXXXXXXXXXRRNEDAAVGQESAEVPRILRRPAGASAXXXXXXXXDRATMDGARDARNASAASTGSGRIGGAG-RPTVASDGRRSSAGRASGGAGAFNSNEAGEDGRSSGSTAFTERPGGGGGFSMGAAEGIVASRIAAYDPFSYSQKDAQSSAGTPRHADM 1377
            N+R   P+      AYGP+SVGG+VVFDSAGSGSATXXXXXXXXXXGSRQLHRSPTHPQEAP GS GK SRRGAAPTNGHRD NGGGIPRERSATRR DQQ  XXXXXXXX          EFAEGQYAGKEGDLEGD T  GVV  AA  XXXXXXXXXXX SGYKPTPDQY +QP+ SR+KRVSTDV+VGGVAA RPAGRSP AGGVG+ G TRGAERSPPPTGKAGSQG RGVSFSLSPPAGGR GSNPPQ  RK     XXXXXXXXXXXX  DRRAAA  EKHED                     RRN++AAVGQESAE+PRILRRPAGA+A        DR T+DGARDAR ASAASTGSGRIGGAG RP++A+DGRRSSAGRASGGAG FNS+EAGEDGRSSGSTAF ERPGGGGGFSMGAAEGIVASRIAAYDPFSYSQKDAQSS GTPRHADM
Sbjct:  408 NQRPPPPYNDXXXXAYGPDSVGGIVVFDSAGSGSATXXXXXXXXXXGSRQLHRSPTHPQEAPAGSGGKGSRRGAAPTNGHRDANGGGIPRERSATRRGDQQHQXXXXXXXXXX------XXEFAEGQYAGKEGDLEGDTT--GVVDPAAVGXXXXXXXXXXXXSGYKPTPDQYQSQPRPSRDKRVSTDVVVGGVAAGRPAGRSPAAGGVGVAGETRGAERSPPPTGKAGSQGERGVSFSLSPPAGGRGGSNPPQGSRKXXXXXXXXXXXXXXXXXPADRRAAAMGEKHEDEDGDVEMELESAVGVGGEAQGRRNDNAAVGQESAELPRILRRPAGAAAAAA-----DRTTIDGARDARGASAASTGSGRIGGAGGRPSIATDGRRSSAGRASGGAGVFNSDEAGEDGRSSGSTAFGERPGGGGGFSMGAAEGIVASRIAAYDPFSYSQKDAQSSGGTPRHADM 857
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12943.2417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH38_ECTSI2.050e-17077.11Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12943contigEcto-sp13_S_contig12943:1167..4132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score520.8
Seed ortholog evalue6.6e-145
Seed eggNOG ortholog2880.D7FH38
Model size1380
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size1380
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462692.277937-CDS-Ecto-sp13_S_contig12943:1166..16061681462692.277937-CDS-Ecto-sp13_S_contig12943:1166..1606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12943 1167..1606 -
1681462692.288879-CDS-Ecto-sp13_S_contig12943:2542..33141681462692.288879-CDS-Ecto-sp13_S_contig12943:2542..3314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12943 2543..3314 -
1681462692.297033-CDS-Ecto-sp13_S_contig12943:3964..41321681462692.297033-CDS-Ecto-sp13_S_contig12943:3964..4132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12943 3965..4132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12943.2417.1prot_Ecto-sp13_S_contig12943.2417.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12943 1167..4132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12943.2417.1

>prot_Ecto-sp13_S_contig12943.2417.1 ID=prot_Ecto-sp13_S_contig12943.2417.1|Name=mRNA_Ecto-sp13_S_contig12943.2417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=460bp
NRRKSTPFIRRPPPAYGPESVGGMVVFDSAGSGSATGSASGSFSGSGSRQ
LHRSPTHPQEAPGGSRGKDSRRGAAPTNGHRDTNGGGIPRERSATRRVDQ
QQQQQQQQQQQLQRKPRERVREFAEGQYAGKEGDLEGDNTAVGVVIDAAA
VGGGGGLRGGGGSGYKPTPDQYHNQPQSSREKRVSTDVLVGGVAAERPAG
RSPTAGGVGIGGGTRGAERSPPPTGKAGSQGGRGVSFSLSPPAGGRVGSN
PPQAVRKGGSQSPPQQQQRGGTSSPGDRRAAAEKHEDEDGDVEMELESAV
GVGGEGQGRRNEDAAVGQESAEVPRILRRPAGASAAAAAAAAADRATMDG
ARDARNASAASTGSGRIGGAGRPTVASDGRRSSAGRASGGAGAFNSNEAG
EDGRSSGSTAFTERPGGGGGFSMGAAEGIVASRIAAYDPFSYSQKDAQSS
AGTPRHADM*
back to top

mRNA from alignment at Ecto-sp13_S_contig12943:1167..4132-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12943.2417.1 ID=mRNA_Ecto-sp13_S_contig12943.2417.1|Name=mRNA_Ecto-sp13_S_contig12943.2417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12943:1167..4132- (Ectocarpus species13 EcNAP12_S_4_19m)
AACCGACGAAAATCAACACCTTTTATCCGCAGGCCTCCGCCAGCGTACGG
ACCGGAGTCCGTGGGAGGGATGGTTGTGTTCGACAGCGCCGGGAGCGGGA
GTGCTACGGGGAGCGCGAGCGGGAGCTTCAGCGGGTCCGGGTCGCGACAG
CTGCACCGCAGCCCTACGGTAAGGGTCAGGGTTTTTTGGAAATGACGTCG
CTACGCCCACCACAGAAAACATTAACATTGAGAGCTGTTGTAGTAAAGCA
TGACATCCCGTTCGACTACTGCTGTGGTTATATCGTTATATATCAAAGGG
GTACTGTGGTCTTTATGTGGTTTCATGTGTTTTTCCTACAAACGGATGCC
AAAACACACAAATCGTCACCCGAAACTGAACGTTAAAATTATCTTTAAAA
CCATCACATAGACACCTACATGACGAAAAACAACTATATTTTCCTCTCAA
CCGTTCGTTGTTTTCAGTTGGTGGAGGTGGTAGTGCTGCTGTTGCTGGTG
ATTTTGGTGTCCTTGTTGGTAAAGAGGGTTCTGTGTGTCAAATGTTTTGT
TGTGTGTTTGCTTTTCGCGTGCCCTATGAATGTTTCTAGCTAATTTTGTT
TTCTTCATGTGACGCAGCGGATCCATCTACATCAACAGAAAAGAGTTGAA
GATAGATAAGCAATGACTCCAAGCTTCGGCGGAGGTTTCCTGAATTTCCA
CCGTTTCCCGAGCTGCATACTTTGGTTTTTTCGTCACTACCATTGGGTGA
TCGAGACTTCAGTTGCCATGCATTCAGACGGCTCCCAACCAAACTCCCCC
CCACCCCGCCTAACCCAGCATCCGCAGGAGGCGCCTGGTGGCAGCCGAGG
GAAGGACTCGCGCCGCGGCGCCGCTCCTACCAACGGCCATCGTGACACCA
ACGGTGGCGGCATTCCGCGCGAGAGATCAGCCACACGCCGTGTAGACCAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACAACGAAAGCCTCG
CGAGCGAGTGAGGGAGTTCGCGGAGGGACAATACGCGGGCAAGGAGGGCG
ACTTGGAAGGTGACAACACCGCTGTCGGCGTTGTTATTGACGCCGCCGCT
GTCGGCGGCGGGGGGGGGCTCCGTGGGGGTGGTGGCAGTGGGTACAAGCC
CACGCCGGACCAGTACCACAACCAGCCTCAATCCTCCCGCGAGAAGAGGG
TCTCGACGGATGTGCTGGTGGGCGGGGTCGCCGCCGAGCGGCCTGCCGGC
AGGTCTCCCACCGCTGGCGGAGTGGGGATTGGGGGGGGAACCAGGGGGGC
GGAGAGGAGCCCGCCTCCTACAGGGAAAGCGGGATCCCAAGGGGGACGGG
GGGTGAGCTTCTCTCTATCGCCGCCGGCGGGCGGTAGGGTAGGGTCGAAC
CCGCCGCAGGCGGTGAGGAAGGGAGGGTCGCAGTCCCCTCCGCAGCAGCA
GCAGAGGGGAGGCACGTCGTCCCCCGGAGACAGGAGAGCAGCGGCAGAGA
AGCATGAGGACGAGGACGGGGATGTGGAGATGGAGCTGGAGTCGGCGGTG
GGCGTCGGAGGAGAAGGGCAAGGGAGGCGGAACGAGGATGGTGAGACCAT
GTTTTTTTATTTTCTAGGCGCTCTCACACACGCTGAGTTGATGGCATTTG
AGTTCTCATCCGCACTGAGATTAATGTCTTTCATTGGTCAGCCGGTAAGC
GCGGTCGATGCTGAAAATGTAACCATGCTCAGACACACCGAATTTCTGCC
GTCACACATGTATATAGCGTGTTGTTTTGGAGGCACCGTGGCACATGTGT
AATGTAAACAATGGAGGCTAGACTATTACGAAGTATATCTTTTGAGAAAG
GTGTACGCCCCTTTGAGGGCAGTTGGCTTGTGACCACGGGAAGGCGTCCG
CGTCAGTTGGGGCAGCACGGACATTTGAAGCTACTGAGAGTAGACCGGAA
CGGTTTTTTAATATGATGTCAGCGGGATGTAGACGCGCGTATGCGAAGAA
GTTGTTGATTGATGCCCACCTTCGTGTCGCCTGAGTCATGTGGTGTTGTT
CTATAATGAGATGGAGAGCCTGCTTTGCCATCTTCTTTGTATTGCTTGAG
GTTCCTCATTGTTTTTGATATACATTTTCTTTTGTACCAGAGATTATGTT
TTACGATACGATTTTTTGTTGAGATCTTAAAACACCTCTGTGTCTGTTTG
TCAAAAAATAACGGCAGCGGGGGAAGAGTTGACCAGCCTTCCCAGGATAC
TGTCGTCTCATAAAATGGACAGCGTGCTTGGTCATATCTCTTTCATATTC
ACAAGCTTCAGGTCCTTGTTTGCCTCTTAATCTGTCTTGTAGTTAATAGA
TCCCTCACCCTCCATACTGCTGTTGTATCATAAAATGGACAACGTTGTTG
GCCATGAGCATATTTCTTTTATACTCCATACTTCATGTACTCCAGGTCTT
GGTTTGCCTTTCTCTATCTAACTTGTTGTTGATTGATCCCTTTTCGATGC
GCGCTTGCACACAACGACAGCAGCAGCAGCGGTGGGGCAGGAGTCGGCCG
AGGTTCCCCGAATACTGCGGCGACCAGCGGGAGCCTCCGCCGCCGCCGCC
GCCGCCGCCGCCGCCGACAGAGCCACCATGGACGGCGCTCGCGATGCCCG
CAACGCCTCCGCCGCCTCCACCGGTAGCGGTAGGATCGGAGGAGCAGGGA
GGCCGACGGTTGCGTCGGACGGCCGGCGGTCCTCCGCCGGGAGGGCTAGC
GGCGGCGCGGGTGCCTTCAACAGCAACGAGGCTGGCGAGGACGGTCGTAG
TAGCGGCAGCACCGCTTTCACCGAGAGGCCAGGCGGGGGCGGCGGGTTCA
GCATGGGCGCGGCGGAGGGCATCGTCGCCAGCAGGATAGCGGCGTACGAC
CCGTTTTCATACTCGCAGAAGGACGCCCAGAGCTCGGCGGGTACCCCGAG
GCACGCGGACATGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12943:1167..4132-

>mRNA_Ecto-sp13_S_contig12943.2417.1 ID=mRNA_Ecto-sp13_S_contig12943.2417.1|Name=mRNA_Ecto-sp13_S_contig12943.2417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12943:1167..4132- (Ectocarpus species13 EcNAP12_S_4_19m)
AACCGACGAAAATCAACACCTTTTATCCGCAGGCCTCCGCCAGCGTACGG
ACCGGAGTCCGTGGGAGGGATGGTTGTGTTCGACAGCGCCGGGAGCGGGA
GTGCTACGGGGAGCGCGAGCGGGAGCTTCAGCGGGTCCGGGTCGCGACAG
CTGCACCGCAGCCCTACGCATCCGCAGGAGGCGCCTGGTGGCAGCCGAGG
GAAGGACTCGCGCCGCGGCGCCGCTCCTACCAACGGCCATCGTGACACCA
ACGGTGGCGGCATTCCGCGCGAGAGATCAGCCACACGCCGTGTAGACCAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACAACGAAAGCCTCG
CGAGCGAGTGAGGGAGTTCGCGGAGGGACAATACGCGGGCAAGGAGGGCG
ACTTGGAAGGTGACAACACCGCTGTCGGCGTTGTTATTGACGCCGCCGCT
GTCGGCGGCGGGGGGGGGCTCCGTGGGGGTGGTGGCAGTGGGTACAAGCC
CACGCCGGACCAGTACCACAACCAGCCTCAATCCTCCCGCGAGAAGAGGG
TCTCGACGGATGTGCTGGTGGGCGGGGTCGCCGCCGAGCGGCCTGCCGGC
AGGTCTCCCACCGCTGGCGGAGTGGGGATTGGGGGGGGAACCAGGGGGGC
GGAGAGGAGCCCGCCTCCTACAGGGAAAGCGGGATCCCAAGGGGGACGGG
GGGTGAGCTTCTCTCTATCGCCGCCGGCGGGCGGTAGGGTAGGGTCGAAC
CCGCCGCAGGCGGTGAGGAAGGGAGGGTCGCAGTCCCCTCCGCAGCAGCA
GCAGAGGGGAGGCACGTCGTCCCCCGGAGACAGGAGAGCAGCGGCAGAGA
AGCATGAGGACGAGGACGGGGATGTGGAGATGGAGCTGGAGTCGGCGGTG
GGCGTCGGAGGAGAAGGGCAAGGGAGGCGGAACGAGGATGCAGCGGTGGG
GCAGGAGTCGGCCGAGGTTCCCCGAATACTGCGGCGACCAGCGGGAGCCT
CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGACAGAGCCACCATGGACGGC
GCTCGCGATGCCCGCAACGCCTCCGCCGCCTCCACCGGTAGCGGTAGGAT
CGGAGGAGCAGGGAGGCCGACGGTTGCGTCGGACGGCCGGCGGTCCTCCG
CCGGGAGGGCTAGCGGCGGCGCGGGTGCCTTCAACAGCAACGAGGCTGGC
GAGGACGGTCGTAGTAGCGGCAGCACCGCTTTCACCGAGAGGCCAGGCGG
GGGCGGCGGGTTCAGCATGGGCGCGGCGGAGGGCATCGTCGCCAGCAGGA
TAGCGGCGTACGACCCGTTTTCATACTCGCAGAAGGACGCCCAGAGCTCG
GCGGGTACCCCGAGGCACGCGGACATGTAG
back to top