mRNA_Ecto-sp13_S_contig12942.2416.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: D7FTE3_ECTSI (Methylthioribose-1-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE3_ECTSI) HSP 1 Score: 486 bits (1252), Expect = 5.820e-166 Identity = 252/260 (96.92%), Postives = 255/260 (98.08%), Query Frame = 1
Query: 10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKD--FDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEAT DKD FDVKAFC+AMSTG+GQPDQPPP PEATAPSASLETPEGYRALTGEGAIA+YLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGD GGTVIVKQALPYVRCVGE
Sbjct: 211 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATGDKDKEFDVKAFCQAMSTGEGQPDQPPPNPEATAPSASLETPEGYRALTGEGAIAEYLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDAGGTVIVKQALPYVRCVGE 470
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A6H5JD08_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD08_9PHAE) HSP 1 Score: 286 bits (733), Expect = 2.670e-87 Identity = 150/182 (82.42%), Postives = 156/182 (85.71%), Query Frame = 1
Query: 139 VAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPE---------------------TATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPK 621
VAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPE TATGGGISIEERPASELKTVAG KIAPDG+SAWNPAFDVTPARLITAIVTDKGCVPRKEA EDK+FDVKAFC+AMSTG+ +PDQP PVPEATAPSASLE PEGYRALTGEGAIA+YLAGLPK
Sbjct: 709 VAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPEVCVLMGVCFSNPGLQGWDSLSTATGGGISIEERPASELKTVAGIKIAPDGVSAWNPAFDVTPARLITAIVTDKGCVPRKEAAEDKEFDVKAFCQAMSTGERRPDQPAPVPEATAPSASLEIPEGYRALTGEGAIAEYLAGLPK 890
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A835YPH9_9STRA (Methylthioribose-1-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH9_9STRA) HSP 1 Score: 268 bits (684), Expect = 1.240e-80 Identity = 152/259 (58.69%), Postives = 174/259 (67.18%), Query Frame = 1
Query: 10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCV-PRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
QGARLTA+E V D LPGTLI DS ASFLMAQG VDAVA GADRV ANGDTANKIGT QLAIAA H+ +PF +VAP+T+ D A G I IE+R A EL +VAG KIA DGI WNPAFDVTPA LIT IVTD G + P +A K FD+ AF A S+ +P+ A S+S P GY L G G + Y+ GL +V +G + A+V E GDGN+NLVF CRGP G VIVKQALPYVRCVGE
Sbjct: 217 QGARLTAFEMVEDNLPGTLITDSMASFLMAQGGVDAVATGADRVVANGDTANKIGTYQLAIAAKHHRLPFYIVAPVTTLDAALADGSQIKIEQRAAEELTSVAGIKIAADGIRVWNPAFDVTPAELITGIVTDVGVIRPTLDAQGKKVFDIPAFLRAHSSATA-------IPDTVAASSSCPAPVGYYPLLG-GKVVDYICGLARVAEFMGTTQPAEVEQSEIGDGNMNLVFICRGPKG----AVIVKQALPYVRCVGE 463
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A7S3FFL6_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FFL6_9VIRI) HSP 1 Score: 233 bits (594), Expect = 5.620e-71 Identity = 141/267 (52.81%), Postives = 171/267 (64.04%), Query Frame = 1
Query: 10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASEL-KTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASS--------AADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
QG RLTAYE VADGLPGTLI DSAA+ MAQGKV AV VGADRVAANGDTANKIGT LA+AAAH+ +PF V +P T+ DP TATG I IEER A+EL +T G +APDGI WNPAFDVTPA LI +VT+KG V R + ++ D+KAF EA + E+ +A P G+R L AI Y+AG+P +A++G + A EE GN+N V+ GP+G V+VKQA+PYVRCVGE
Sbjct: 60 QGGRLTAYEIVADGLPGTLIADSAAASAMAQGKVQAVIVGADRVAANGDTANKIGTYALAVAAAHHNVPFFVASPTTTLDPTTATGADIVIEERDATELTRTRGGEALAPDGICVWNPAFDVTPAGLIAGVVTEKGVVARGKG--ERAIDIKAFVEAQRS------------ESELAAAPKGAP-GFRELDAASAI-DYVAGIPSAVAVLGGAKGEWRCHEVADSEGDEEAAAGNVNFVYFVSGPSGK----VVVKQAMPYVRCVGE 306
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A7S3Y9V7_HETAK (S-methyl-5-thioribose kinase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9V7_HETAK) HSP 1 Score: 230 bits (587), Expect = 1.980e-67 Identity = 140/269 (52.04%), Postives = 167/269 (62.08%), Query Frame = 1
Query: 10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASEL---KTVAGT------KIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKD--FDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
QG RLTAYE V DGLPGTLI DSAA+ LM ++D V VGADRVAANGDTANKIGT QLA+AA H+G+PF V AP T+ DP+ G I IEER +E+ K G IAP I AWNPAFDVTPA LITAI+T++G + T+ FDV F E G P+Q + T GY +T + +A YL G+ + ++G + A+ V S EFGDGNLNLVFRC GP G G +I KQALPYVRCVGE
Sbjct: 101 QGGRLTAYEIVEDGLPGTLIVDSAAALLMKTRQIDCVVVGADRVAANGDTANKIGTYQLAVAARHHGVPFYVAAPTTTLDPKIICGDDIPIEERSPTEITHQKIYDGAGGSSEVPIAPATIPAWNPAFDVTPAELITAIITERGPLLPARTTDKAGNVFDVPTFLE---NADGAPEQ----------KQGVVTKYGYYEMTVD-TVAHYLVGVRRCREVLGTADASAVTSVEFGDGNLNLVFRCEGPQG---GVLIAKQALPYVRCVGE 352
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: W7TVE0_9STRA (Methylthioribose-1-phosphate isomerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVE0_9STRA) HSP 1 Score: 230 bits (587), Expect = 2.050e-66 Identity = 145/294 (49.32%), Postives = 173/294 (58.84%), Query Frame = 1
Query: 10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGC---------------VPRKEATEDK-------------DFDVKAFCEAMSTGQGQPDQPPPVPEATAP-------SASLETPE-GYRALTGEGAIAQYLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
QGARLTA+E V D LPGTLI DS SFLMA +DA+ VGADR+AANGDTANKIGT QLA+ A H+G+ F V AP TS D A+G I IEERPA EL V G ++AP I+ WNP FDVTPA LIT I+T+KG VP +E ED+ FD+ F G+G P +P+A AP SA+L +P GY+AL+ E + V L+GA + A+V E GDGNLNLVF RGP TV+VKQALPYVRCVGE
Sbjct: 235 QGARLTAFELVQDQLPGTLITDSMVSFLMATQGLDAIVVGADRIAANGDTANKIGTYQLAVTAKHHGVAFYVAAPFTSFDLSLASGDQIEIEERPARELTQVQGIQVAPQEIAVWNPGFDVTPASLITGIITEKGVIHPFPSAGATDAKPRVPTQETGEDRRKSNGTVGHGRRMTFDIPGFL----NGEGAHQIPSSLPDAAAPTPSMELDSANLPSPSSGYKALSEENVALFLEKHVRDVWDLLGARTGAEVEISEVGDGNLNLVFIVRGPKN----TVVVKQALPYVRCVGE 520
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A383VBY4_TETOB (Methylthioribose-1-phosphate isomerase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VBY4_TETOB) HSP 1 Score: 214 bits (544), Expect = 1.970e-60 Identity = 129/259 (49.81%), Postives = 158/259 (61.00%), Query Frame = 1
Query: 10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIG-ASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
QGARLTA+E V DGLP TL+ DSAA+ LMAQGKVDAV VGADRV ANGDTANKIGT A+AAA +GIPF V AP T+ D ATG I IE+RPA E+ G ++ +GI WNP FDVTP RL+ I+T++G VPR + V AF A Q Q VP T+ ++L+ + +LAG P++ +G A S +E GDGN+N V+ GP+G V VKQALPYVRCVGE
Sbjct: 220 QGARLTAFELVHDGLPATLLVDSAAAALMAQGKVDAVVVGADRVVANGDTANKIGTFSHAVAAAAHGIPFFVAAPTTTLDAGLATGEEIEIEQRPAEEITHFKGQRVVVEGIDVWNPCFDVTPGRLVEGIITEEGLVPRDSGSGS--HKVAAFMAARQ--QAQAANGTAVPRPTSSVSALDA----------AGVVAFLAGRPQLAKHVGPAGSEGSWDVKEVGDGNINFVYIVTGPSGG----VCVKQALPYVRCVGE 460
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: C1MR76_MICPC (Methylthioribose-1-phosphate isomerase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MR76_MICPC) HSP 1 Score: 212 bits (540), Expect = 5.620e-60 Identity = 128/259 (49.42%), Postives = 163/259 (62.93%), Query Frame = 1
Query: 10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVM-ALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
QGARLTAYE + +PGTLI DSAA+ LMA+GKVDAV VGADRVA NGDTANKIGT LA++ A++G+PF V AP T+ D TATG I IE+RP++E+ GT++A +GI WNP+FDVTP LI I+T+ G V RK A D F++ F + G+P A+ P G+ AL + Y AG + AL GAS+ + ++E GDGN+N V+ G G+ VIVKQ LPYVRCVGE
Sbjct: 222 QGARLTAYEIAFEKMPGTLICDSAAAALMAKGKVDAVVVGADRVADNGDTANKIGTYNLAVSCAYHGVPFFVAAPSTTLDANTATGADIVIEDRPSTEVTHSLGTRVAAEGIDVWNPSFDVTPGSLIEGIITESG-VARKNA--DGAFEIGKFIRDVIGAGGEP-------------AAAAGPPGFVALD-TATVLDYCAGKASIADALGGASTRKEWSAKEVGDGNINFVYIVTGSGGNA---VIVKQGLPYVRCVGE 460
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: C1E0H5_MICCC (Methylthioribose-1-phosphate isomerase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E0H5_MICCC) HSP 1 Score: 212 bits (539), Expect = 6.560e-60 Identity = 130/259 (50.19%), Postives = 165/259 (63.71%), Query Frame = 1
Query: 10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASSAADVVS-EEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
QGARLTAYE + +PGTLI DSAA+ LMA+GKVDAV VGADRVA NGDTANKIGT LA++AA++ +PF V AP+++ DP TA G I IE+RPA+E+ G ++A +GI WNP+FDVTPA LI I+T+KG V RK A+ D F V F A TG + AP+ L P G+ AL + + Y A P+V A +G + S +E GDGN+N V+ AG G +IVKQ LP+VR VGE
Sbjct: 208 QGARLTAYEIAFEKMPGTLICDSAAAALMAKGKVDAVVVGADRVADNGDTANKIGTYNLAVSAAYHDVPFFVAAPISTLDPSTAKGADIVIEDRPATEITHSLGKRVAAEGIDVWNPSFDVTPAALIAGIITEKGVV-RKTASGD--FAVGKFV-AEVTG------------SDAPAPKLSGPPGFVALDCD-TVLDYCAAKPEVAAALGGAEGRGAWSAKEVGDGNINFVYIVSNGAG---GAIIVKQGLPFVRVVGE 446
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A150H0Q5_GONPE (Methylthioribose-1-phosphate isomerase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H0Q5_GONPE) HSP 1 Score: 212 bits (539), Expect = 9.360e-60 Identity = 123/264 (46.59%), Postives = 160/264 (60.61%), Query Frame = 1
Query: 10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCE-----AMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASSAADVVS-EEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
QGARLTA+E DGLP TLI DSAA+ LM G+VDAV VGADRV ANGDTANKIGT L+IAAAHYG+PF + AP T+ DP +G I IE+R EL G ++A +G+ WNP+FDV P LI I+T+KG VP+++ F V++F A G A+ + P G+RAL E ++ Y+A P + +G + + + S E GDGN+N VF GP+G ++ +KQALPYVRCVGE
Sbjct: 221 QGARLTAFELAHDGLPATLICDSAAAALMGTGQVDAVVVGADRVVANGDTANKIGTQSLSIAAAHYGVPFFIAAPTTTLDPALPSGEHIVIEQRTHEELTHFRGQRVAAEGVGVWNPSFDVAPGALIEGIITEKGMVPKQDGA----FQVRSFMAQLGLWAQPAGHSAAADHAADAVASGSGSGPAVPRGFRALDLE-SVKHYVAARPGLQQRVGPADSVESWSVREVGDGNINFVFIVEGPSG----SLCIKQALPYVRCVGE 475 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12942.2416.1 >prot_Ecto-sp13_S_contig12942.2416.1 ID=prot_Ecto-sp13_S_contig12942.2416.1|Name=mRNA_Ecto-sp13_S_contig12942.2416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp SRAQGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANback to top mRNA from alignment at Ecto-sp13_S_contig12942:115..4113+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12942.2416.1 ID=mRNA_Ecto-sp13_S_contig12942.2416.1|Name=mRNA_Ecto-sp13_S_contig12942.2416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12942:115..4113+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12942:115..4113+ >mRNA_Ecto-sp13_S_contig12942.2416.1 ID=mRNA_Ecto-sp13_S_contig12942.2416.1|Name=mRNA_Ecto-sp13_S_contig12942.2416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12942:115..4113+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |