mRNA_Ecto-sp13_S_contig12937.2414.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12937.2414.1
Unique NamemRNA_Ecto-sp13_S_contig12937.2414.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Match: A0A6H5L5S3_9PHAE (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5S3_9PHAE)

HSP 1 Score: 869 bits (2246), Expect = 2.520e-304
Identity = 584/785 (74.39%), Postives = 604/785 (76.94%), Query Frame = 1 
Query:    1 QVESPVVEYCEALVTQGVDVQRQALKVLEPALKDMEDENDFPDFDEISS-SSXXSKGLASESESERDGSVDSSGGRAPATSRSSTETNANNISXXXXXXXXXXXXXXXXRER-------------LAWRCVEAARSASRLLPRLTAHALLPASALRLTHSCAPAVRVPAGDRRSYNVGGGGVVSGAPTAGAAGWPLTVATVALRDLAAGEALSCSWVDPEETFSVRMARLEEYAQVPPCASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDCRGSKETGVSGRRGEGTLASLQSPDGRGCGCPRCLVESGGLDGDGSEGVSGAGAAERLLKAAQQAVDEDRFDDAFEALSRAARAAPDNADVLYRAGVCAINQGRWSRALRLWRDGLAVSPDHPELKREAEKYQALAFWLDRGKRDASTDARSSSGALVGAVTDSGSXXXXXXXXXXXXXXXXXXXXXX------DEFAAPALLPAGETFDNLDVDFMAGDGEWVCSTRLPLLSASECSAIINEAEEKAXXXXXXXXXXXXXXXXXXXX-WGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIGTTVAVAAALGGGIFERPGRRSGSLKLSPPVAEPHAQDKDFSAHAVCSAADSDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGDYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLYEHWEE 2292
            +VESPVVEYCEALVTQG DVQRQALKVLEP L DMEDE+DFPD DEI   SS  S G+AS+SE ERDGSVD +G RAPATSRSSTE   N   XXXXXXXXXXXXXXXX                LAWRCVEAARSASRLLPRLTAHALLPASALRL HSC PA RVPAGDRRSYNVGGGGVVSGAPTAGAAGWPL VATVALRDLAAGEALSCSWVDPEE FSVRMARLEEY++VPP AS  XXX                XXXXXXXXX     DCRGSKETGVSGR GEGTLASLQ P GRGCGCP+CLVESGGL G GSEGVS AGAAERLLK AQQAVDEDR                                     ALRLW+DGLA+SP+HPELKREAEKYQALAFWLD G+ DA+TDARSS             XXXXXXXXXXXXXXXXXXXXXX      D F APA LPAGE FDNLDVDFMAGDGEWVCSTRLPL+SASECSAIINEAEEKAXXXXXXXXXXXXXXXXXXX  WGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIG TVAVAAALGGGIFERPGRRSGSL+LSPPVA+PHA+D+DF AHAVCSAADSDEA                                         XXXXX   ALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTG+YEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGG+EVTRGVRYILAVFLYEHWEE
Sbjct:  251 EVESPVVEYCEALVTQGDDVQRQALKVLEPTLNDMEDESDFPDSDEIIIVSSSSSNGVASDSEGERDGSVDINGRRAPATSRSSTENLPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAWRCVEAARSASRLLPRLTAHALLPASALRLPHSCTPAARVPAGDRRSYNVGGGGVVSGAPTAGAAGWPLAVATVALRDLAAGEALSCSWVDPEEPFSVRMARLEEYSRVPPWASDDXXXVPTAGDCAASSCPLEGXXXXXXXXX----NDCRGSKETGVSGRSGEGTLASLQFPRGRGCGCPKCLVESGGLAGGGSEGVSSAGAAERLLKVAQQAVDEDR-------------------------------------ALRLWKDGLALSPNHPELKREAEKYQALAFWLDPGEGDANTDARSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDDGFTAPAQLPAGEAFDNLDVDFMAGDGEWVCSTRLPLISASECSAIINEAEEKAXXXXXXXXXXXXXXXXXXXSGWGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIGPTVAVAAALGGGIFERPGRRSGSLELSPPVAKPHAKDEDFPAHAVCSAADSDEAAAAIALIAPEDGQKGRQVESDDDQEGQSREAEEPRGRAGAPXXXXX---ALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGEYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGKEVTRGVRYILAVFLYEHWEE 991
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BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Match: D7G7N2_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N2_ECTSI)

HSP 1 Score: 707 bits (1826), Expect = 2.960e-247
Identity = 440/556 (79.14%), Postives = 454/556 (81.65%), Query Frame = 1 
Query:  637 MARLEEYAQVPPCASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDCRGSKETGVSGRRGEGTLASLQSPDGRGCGCPRCLVESGGLDGDGSEGVSGAGAAERLLKAAQQAVDEDRFDDAFEALSRAARAAPDNADVLYRAGVCAINQGRWSRALRLWRDGLAVSPDHPELKREAEKYQALAFWLDRGKRDASTDARSSSGALVGAVTDSGSXXXXXXXXXXXXXXXXXXXXXXDE-FAAPALLPAGETFDNLDVDFMAGDGEWVCSTRLPLLSASECSAIINEAEEKAXXXXXXXXXXXXXXXXXXXXWGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIGTTVAVAAALGGGIFERPGRRSGSLKLSPPVAEPHAQDKDFSAHAVCSAADSDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---ALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGDYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLYEHWEE 2292
            MA+LEEYA+ PPCAS XXXXXXXXX                        + CRGSKE GVSGRRGEG LASLQS  G GCGCP+CLVESGGLDGDGSEG+SGAGAAERLLKAAQQAVDEDRFDDAFEALSRAARAAPDN+D+LYRAGVCAINQGRWSRALRLWRDGLA+SPDHPELKREAEKYQALAFWLD GK DA+ DARSSSGALVGA T    XXXXXXXXXXXXXXXXXXXXX D+ F A ALLPAGE FDNLDVDFM G GEWVCSTRLPLLSASECSAI+NEAEEKA XXXXXXXXXXXXXXXXX  WGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIG TVAVAAALGGG+FERPGRRSGSLK SPPVAEPHAQD+DF A AVCSAADSDEA                              XXXXX                 ALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTG+YEGGGTWFEGLG AVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLYEHWEE
Sbjct:    1 MAKLEEYARFPPCASDXXXXXXXXXVPTVGDCAAFYCLLEGGVGVGA--KGCRGSKENGVSGRRGEGKLASLQSIGGCGCGCPKCLVESGGLDGDGSEGMSGAGAAERLLKAAQQAVDEDRFDDAFEALSRAARAAPDNSDILYRAGVCAINQGRWSRALRLWRDGLALSPDHPELKREAEKYQALAFWLDPGKGDANPDARSSSGALVGAATXXXXXXXXXXXXXXXXXXXXXXXXXQDDGFTATALLPAGEAFDNLDVDFMTGHGEWVCSTRLPLLSASECSAIVNEAEEKASXXXXXXXXXXXXXXXXXGGWGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIGPTVAVAAALGGGVFERPGRRSGSLKRSPPVAEPHAQDEDFPARAVCSAADSDEAAESAEALRASASVEPENGQERRQVESDDDQXXXXXEAEEPRGRPGAPTPXXPALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGEYEGGGTWFEGLGSAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLYEHWEE 554
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BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Match: A0A7S3S1M1_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S1M1_EMIHU)

HSP 1 Score: 116 bits (290), Expect = 1.930e-23
Identity = 66/93 (70.97%), Postives = 72/93 (77.42%), Query Frame = 1 
Query: 2005 RLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGDYEGGGTWFEGLGRA--VRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLY 2277
            RLRV DAFVVRYDAAAQRSLP H D   LSLTI+LN TG+Y+GGGT FE LG    VRPE+ G VV FPG    HGGR VTRGVRYI+AVFL+
Sbjct:  455 RLRVWDAFVVRYDAAAQRSLPTHQDDSHLSLTIALNETGEYDGGGTSFEDLGGEGFVRPEK-GCVVAFPG-ELRHGGRAVTRGVRYIIAVFLW 545
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BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Match: R1BXH6_EMIHU (Fe2OG dioxygenase domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BXH6_EMIHU)

HSP 1 Score: 116 bits (290), Expect = 2.710e-23
Identity = 66/93 (70.97%), Postives = 72/93 (77.42%), Query Frame = 1 
Query: 2005 RLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGDYEGGGTWFEGLGRA--VRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLY 2277
            RLRV DAFVVRYDAAAQRSLP H D   LSLTI+LN TG+Y+GGGT FE LG    VRPE+ G VV FPG    HGGR VTRGVRYI+AVFL+
Sbjct:  510 RLRVWDAFVVRYDAAAQRSLPTHQDDSHLSLTIALNETGEYDGGGTSFEDLGGEGFVRPEK-GCVVAFPG-ELRHGGRAVTRGVRYIIAVFLW 600
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BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Match: R1G8J0_EMIHU (Fe2OG dioxygenase domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G8J0_EMIHU)

HSP 1 Score: 116 bits (290), Expect = 8.090e-23
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = 1 
Query: 2008 LRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGDYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFL 2274
            LRV D F+VRYDA  Q SLP HTDQ  LS TI+LN  G+Y+GGGTWF GLGRAV    AGH V+FPG +  HGG  +TRGVRYI+ +F+
Sbjct:  879 LRVLDCFLVRYDATKQASLPTHTDQSLLSFTIALNDPGEYDGGGTWFRGLGRAVDAPAAGHAVLFPG-KVEHGGHPITRGVRYIIVLFM 966
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BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Match: C1EAF2_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EAF2_MICCC)

HSP 1 Score: 112 bits (281), Expect = 7.110e-22
Identity = 91/309 (29.45%), Postives = 123/309 (39.81%), Query Frame = 1 
Query: 1354 DEFAAPALLPAGETFDNLDVDFMAGDGEWVCSTRLPLLSASECSAIINEAEEKAXXXXXXXXXXXXXXXXXXXXWGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIGTTVAVAAALGGGIFERPGRRSGSLKLSPPVAEPHAQDKDFSAHAVCSAADSDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGDYEGGGTWFE-GLGRAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLY 2277
            DE  AP +  A +T  ++  + +   G W      PL++ +EC+  +  AE+                      W TSRHYAVPTTD+ V  +P  L  +N  MR ++ + ++ A                          P    K  S                                                                    +RVHDAFVVRY+A AQ  LP+H DQ  +S+T++LN  G+YEGGGT F   +G+ VRP   GHVV F GG   HGG  VTRGVRYI+A FL+
Sbjct:  698 DEAYAPGVPAADQTRRSVAFESVHEAGIWATPESSPLMTEAECAEWVRLAEKAGEARGG---------------WTTSRHYAVPTTDIPVHAIPDLLPLWNALMRDKLASLLSAAC-------------------------PEEMPKPSS--------------------------------------------------------------------VRVHDAFVVRYEAGAQHHLPMHADQSAVSVTLALNDEGEYEGGGTTFAVPVGKTVRPGR-GHVVAFKGGLQ-HGGSPVTRGVRYIVAAFLF 896
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BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Match: A0A7S2HJP0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HJP0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.850e-21
Identity = 61/118 (51.69%), Postives = 75/118 (63.56%), Query Frame = 1 
Query: 2002 RRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTG---------------------DYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLYEHWEE 2292
            RRL V+DAF+V+Y A AQR LPLHTDQ  LSLTI+LNG+G                      +EGGGT+FE +GR + P  AG +V FPG    HGG+ +T+GVRYI+AVFLY   EE
Sbjct:   97 RRLGVNDAFIVKYTAEAQRHLPLHTDQSALSLTIALNGSGGDDHHPSHEGGDADGPEDAVGSFEGGGTYFEQIGRPLCPC-AGGLVAFPG-ELSHGGQPITKGVRYIIAVFLYVIEEE 212
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BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Match: A0A7S4BI62_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BI62_CHRCT)

HSP 1 Score: 106 bits (264), Expect = 6.960e-21
Identity = 52/95 (54.74%), Postives = 70/95 (73.68%), Query Frame = 1 
Query: 2008 LRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGDYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLYEHWEE 2292
            +RVHDAF+V+Y AAAQ  LP+H D+ +LS+T+ LN + +Y+GGGT+F  L RAVRPE+ G ++ F G   +HGG  + RGVRY+LA FLY   EE
Sbjct:  243 VRVHDAFIVKYHAAAQARLPMHFDESQLSITLPLNESSEYDGGGTYFYALRRAVRPEQ-GQLLAFSGA-LLHGGEPIVRGVRYVLAAFLYIEGEE 335
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BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Match: A0A7S4F157_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F157_CHRCT)

HSP 1 Score: 106 bits (264), Expect = 1.400e-20
Identity = 52/95 (54.74%), Postives = 70/95 (73.68%), Query Frame = 1 
Query: 2008 LRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGDYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLYEHWEE 2292
            +RVHDAF+V+Y AAAQ  LP+H D+ +LS+T+ LN + +Y+GGGT+F  L RAVRPE+ G ++ F G   +HGG  + RGVRY+LA FLY   EE
Sbjct:  301 VRVHDAFIVKYHAAAQARLPMHFDESQLSITLPLNESSEYDGGGTYFYALRRAVRPEQ-GQLLAFSGA-LLHGGEPIVRGVRYVLAAFLYIEGEE 393
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Match: F0Y9Z7_AURAN (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Z7_AURAN)

HSP 1 Score: 108 bits (271), Expect = 1.490e-20
Identity = 79/238 (33.19%), Postives = 103/238 (43.28%), Query Frame = 1 
Query: 1576 WGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIGTTVAVAAALGGGIFERPGRRSGSLKLSPPVAEPHAQDKDFSAHAVCSAADSDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGDYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLYEHWE 2289
            W T+RH+AVPTTDV VRE+P  L WFN A+R+ I    A+ A  G               L P                                                                                RLRV DAF+V+Y AAAQRSLPLH+DQ ++S+T+ LN + DY+GGGT+F  L +AV   +AG +V FPG    H G  +TRG R+++  FLYE+ E
Sbjct:  755 WTTARHFAVPTTDVPVREVPALLKWFNDALRSSIFP--ALGALYG---------------LDP-------------------------------------------------------------------------------ARLRVIDAFLVKYSAAAQRSLPLHSDQSQISITLPLNSSADYDGGGTYFHDLRQAVN-RDAGGLVAFPG-FLPHAGHAITRGTRFVVVAFLYEYRE 894
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12937.2414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5S3_9PHAE2.520e-30474.39Fe2OG dioxygenase domain-containing protein (Fragm... [more]
D7G7N2_ECTSI2.960e-24779.14Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S3S1M1_EMIHU1.930e-2370.97Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1BXH6_EMIHU2.710e-2370.97Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
R1G8J0_EMIHU8.090e-2362.92Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]
C1EAF2_MICCC7.110e-2229.45Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A7S2HJP0_9STRA2.850e-2151.69Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4BI62_CHRCT6.960e-2154.74Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4F157_CHRCT1.400e-2054.74Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
F0Y9Z7_AURAN1.490e-2033.19Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12937contigEcto-sp13_S_contig12937:141..4768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score717.2
Seed ortholog evalue8.1e-204
Seed eggNOG ortholog2880.D7G7N2
Model size2328
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.procollagen-lysine 5-dioxygenase activity
EggNOG OGsKOG1971@1,KOG1971@2759
Cds size2328
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462692.0582142-CDS-Ecto-sp13_S_contig12937:140..13591681462692.0582142-CDS-Ecto-sp13_S_contig12937:140..1359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12937 141..1359 -
1681462692.0703015-CDS-Ecto-sp13_S_contig12937:2483..25941681462692.0703015-CDS-Ecto-sp13_S_contig12937:2483..2594Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12937 2484..2594 -
1681462692.079583-CDS-Ecto-sp13_S_contig12937:3023..39431681462692.079583-CDS-Ecto-sp13_S_contig12937:3023..3943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12937 3024..3943 -
1681462692.0951567-CDS-Ecto-sp13_S_contig12937:4690..47681681462692.0951567-CDS-Ecto-sp13_S_contig12937:4690..4768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12937 4691..4768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12937.2414.1prot_Ecto-sp13_S_contig12937.2414.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12937 141..4768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12937.2414.1

>prot_Ecto-sp13_S_contig12937.2414.1 ID=prot_Ecto-sp13_S_contig12937.2414.1|Name=mRNA_Ecto-sp13_S_contig12937.2414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=776bp
QVESPVVEYCEALVTQGVDVQRQALKVLEPALKDMEDENDFPDFDEISSS
SSSSKGLASESESERDGSVDSSGGRAPATSRSSTETNANNISGNRSGNCS
ENVPENRSRERLAWRCVEAARSASRLLPRLTAHALLPASALRLTHSCAPA
VRVPAGDRRSYNVGGGGVVSGAPTAGAAGWPLTVATVALRDLAAGEALSC
SWVDPEETFSVRMARLEEYAQVPPCASDDDDDDDDVPTGGDCAASSCPHE
GGVGGGGGGGGRDCRGSKETGVSGRRGEGTLASLQSPDGRGCGCPRCLVE
SGGLDGDGSEGVSGAGAAERLLKAAQQAVDEDRFDDAFEALSRAARAAPD
NADVLYRAGVCAINQGRWSRALRLWRDGLAVSPDHPELKREAEKYQALAF
WLDRGKRDASTDARSSSGALVGAVTDSGSAAAASSPPFSSPPQPVTTGGQ
DDEFAAPALLPAGETFDNLDVDFMAGDGEWVCSTRLPLLSASECSAIINE
AEEKASAAVAAAAGGGGSGGGGGGGWGTSRHYAVPTTDVAVRELPRTLAW
FNRAMRTRIGTTVAVAAALGGGIFERPGRRSGSLKLSPPVAEPHAQDKDF
SAHAVCSAADSDEAAAAAAAIALVAPEDGQERRQVESDDDQEGQGREAEE
PRGRAGAPTPPPPALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLT
ISLNGTGDYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGREVTRGV
RYILAVFLYEHWEEEEEEEEEEEEEE
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mRNA from alignment at Ecto-sp13_S_contig12937:141..4768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12937.2414.1 ID=mRNA_Ecto-sp13_S_contig12937.2414.1|Name=mRNA_Ecto-sp13_S_contig12937.2414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4628bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12937:141..4768- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGAATCGCCCGTGGTCGAGTATTGCGAAGCGCTCGTTACCCAAGG
TGTTGACGTTCAACGCCAGGCACTCAAGGTGTATGTACCATCTGCAGCGC
CGAGTTGTACCCAGCCATAGAAAGTGAAGCAGCGGGCGCCAAACAGCGAT
GTTGTTGTGGGGATGTTCGGGGTTGTGCTCGACGTGTCTCCGCCTATGGA
CGGGTCGAAATTCGTCAAGACGAGCAATCTCTGCACATCGTTTTGTTGCC
TTGCCTGATGGACCCCAAGCCTATCTTTAGATCCCAAGGAGTTGGTCTTG
GGTAGGAAGACTCCTGTTCGCCTCGACGGTTGTGTTGTCGTCTACCTGTG
TTGTCAAGCGATGCGCTTGGTTCTCCCTGGGGGGTGTACTAGTACAAAAG
TCAGCAAAAGCAGCTCCGAAATGGGAGCCCGTTCTGTCCTGGTTTTCCAT
CCATATGCCGACGGAGCCTTGCGCGAAGCATGATGGGAAGTGGTGGAATA
TGATTGGTAGCTCATGTTGTACCGTTAGGAGTTCTAGTGATTCGTTTTGG
TCTTGAATTAGCGGTTGGCAGAAAACACGTCATCCACGCGACACGCCCTC
TTACGTCTCCATCTGTCTATGTTTTTCTCCCTCCCTCTCTCTCTCCCTCT
CGCTTTCTCTCTCTCCCCTAGCGTTTATCGTGTGCCTTTTTTGAAGCGTC
GCCCTACCACTCCCGATTTCACTCTCTGTCGACCTCTCGACATGACGATC
TCCCTATGTGGCCGGGTACACAACCTTTTACCACCCCGACCTGTTTCTTT
GCCATGCACCTACAAACGCTTGCAGGTCCTTGAGCCCGCGCTCAAAGACA
TGGAGGACGAAAACGACTTCCCAGATTTTGATGAAATCAGCAGCAGCAGC
AGTAGTAGCAAGGGGTTGGCGAGCGAGAGCGAGAGCGAAAGGGATGGGAG
TGTAGACAGCAGTGGCGGGAGGGCCCCCGCCACGTCGAGAAGCAGCACCG
AGACCAACGCGAATAACATATCCGGGAACCGTTCCGGGAACTGTTCCGAG
AACGTTCCCGAGAACCGTTCTCGGGAACGCCTGGCGTGGCGCTGCGTGGA
GGCGGCGCGCTCGGCCTCCCGGCTCCTGCCTCGCCTGACGGCTCACGCGC
TGCTCCCGGCGTCCGCCCTCCGGCTGACCCACTCCTGCGCCCCCGCCGTC
CGTGTGCCTGCCGGAGACCGCCGCAGCTACAACGTCGGCGGAGGAGGCGT
CGTTTCTGGTGCTCCGACCGCCGGTGCGGCCGGGTGGCCCTTGACGGTGG
CAACCGTCGCCCTGAGGGATCTTGCCGCCGGGGAGGCGTTATCCTGCTCC
TGGGTGGACCCGGAAGAGACGTTTTCGGTCCGGATGGCCAGGCTCGAGGA
GTACGCCCAAGTCCCACCGTGCGCTTCCGATGATGATGATGATGATGATG
ATGTCCCAACCGGAGGTGATTGCGCCGCCTCTTCTTGTCCTCACGAAGGC
GGTGTGGGCGGCGGCGGCGGCGGCGGCGGCAGAGACTGCCGAGGTTCAAA
AGAGACTGGGGTATCCGGGAGACGCGGCGAAGGAACGCTAGCATCACTAC
AATCTCCCGACGGGCGTGGTTGCGGCTGCCCAAGGTGCCTGGTGGAAAGC
GGGGGGTTAGATGGCGACGGAAGCGAGGGAGTGTCGGGCGCAGGGGCGGC
GGAGCGGCTGCTCAAGGCTGCGCAGCAGGCGGTGGACGAAGACCGGTGAG
GTGACGGCGTCTTAATAACCGCCTGAATCGCTGCCTGAGAGCAAGAGGAT
GCTTTGATCTCCTTGGTTGGTATGGCGTTTAGCGGATTGTTTTGGTTCCG
GGGAGCTGGAGTGATTGGCCAACCTGTGACGGTGGTTGTCAGTTATACCT
GCTGGTGCGCGGCGGCAACGTGTGGGGAAAACGCCACGGCATGATTGTCT
TCACTCCTCCCCCGCCTCCCATGTACAAATGTGCCGCGTGGTAGAAGGCG
GCAGTTTCCGACAAAAAAGTGTTCTGCGACGTATCATCTTGCGAGGATCC
TTCCTTACCCGGGTAATGTAACCATGCCATCAAGGTCAGTCCCTTAGCTA
AGCGAATGGCGTCCATGCCGTCCCCCCCTTCTCGTCCACCTTTCCCCCCC
CCACCGATTTCCTCAATCTTCAAGCTTCGACGATGCGTTCGAAGCGTTAT
CAAGGGCAGCAAGGGCTGCGCCGGACAACGCGGATGTCCTCTACCGAGCC
GGTGTTTGCGCCATTAACCAGGGACGGTGGAGCAGGTGCTAATTGAAGCT
TACCAGTAGACAATTAGTTCTCGTCAGCGGGACGGGGCACAGAGATTCGG
GTGCCCGTGGCTAGCCTCGTGCGTAGGTTTTTGTTGTGTTTCTTTCTTCT
CCAAGCTTTGGCACACGCAGGATGTTTCCATTGTCGTCGCAGTTCAGTTC
TTCCCAGGGAGGGGTTAAACTCTTCCACTCATTGGCTCAATGCTCTCGGC
AAAGGCCCGCGATACGTCTCTTAGAACACGCCATGGACTGGCTTTCGGCT
TCACCATGAGTTAGTGGATCGATTGATGGATGGATGGATAGACTGGCCTT
AGCTCCACCATGGGTGAGGGCGTGGATAGCTGAAATAGATACATGCCGCG
CGACCCCGGCAGCGCCTTGCGTGGACATCGTCACCGCAATTCACGGCTTC
ACCGATGCTCGCCGGGAAGAAGGGCGGTGTTCCGATTTTCTGCGCCAGCC
TTGCCTGCCCGGGGGGAAAGTAGCCAGTCAAAAGGTTGCCGAGGAACCGA
TGGCTCTGCGCTCAGCGCCAACGTACGTATAGCCTTTTTTCCGGAAGGAC
CGCCCTCGTTCCTACCCCCTGCCATGTTAACGAAGCGCTAGCTTCCCCGT
AGGTTGAGAAAAACTCCGGCGGATGGAGGTCACGCAGGCGACGCGTGGTG
GACACAAGTATCACGGTAGCTGTCGGGCGTTGTGGAGGCCTGTGGTGTTG
TTTTGATCCCCGCCTCCGCGTGGGACATGGCTCTGGCTGTGTCAGACGTG
GACCGGGCAGGATCCCACGCTCCCCCCCCCACCCCCCACCCCCCCCTCCG
CAAGGAACGATGGGCCATCGGTGATCAGTCCTGCGGCAACAAAGCTCCGT
CCTCTCGAGGATGCGTGGGCAGTAGTCTATCAACTAAGGCATGCAAAACA
TCAGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCGAAANNNNNNTCGCCGTGCCGTCGAAGGGT
GTGTGGGCGGTCGTTTAACATATAGCACAGGGAAAGCAGCGCACCCCCCC
CCCCCCCCCCCCCCCATCTTCCTCACCGCCGGGCCGCCGCTGCTGCTCCT
GCTGCACAGGGCTCTCCGGCTGTGGAGGGACGGTCTGGCCGTATCCCCTG
ACCATCCGGAGCTGAAGCGAGAGGCGGAAAAGTACCAGGCACTCGCCTTC
TGGCTTGATCGTGGTAAACGGGATGCCAGTACCGACGCAAGAAGCAGTAG
CGGCGCTTTGGTAGGCGCGGTGACAGACAGCGGCAGCGCCGCTGCGGCGT
CGTCCCCTCCGTTTTCATCGCCACCGCAGCCGGTAACGACAGGCGGCCAG
GACGACGAGTTCGCCGCCCCGGCACTACTGCCCGCCGGAGAAACTTTCGA
CAACCTCGACGTGGACTTCATGGCCGGCGACGGGGAGTGGGTGTGCAGCA
CGCGGCTTCCCCTCCTTTCGGCATCCGAATGCTCCGCGATCATCAACGAG
GCCGAGGAGAAAGCCTCCGCCGCCGTCGCCGCGGCAGCCGGCGGCGGCGG
CAGCGGCGGCGGCGGCGGCGGCGGCTGGGGGACGTCGAGGCACTATGCCG
TCCCGACAACGGACGTGGCTGTGCGCGAGCTCCCGCGGACCCTTGCGTGG
TTCAACCGGGCGATGCGGACGCGGATAGGCACAACCGTTGCGGTCGCCGC
GGCGTTGGGCGGAGGCATTTTCGAGAGGCCGGGCCGACGGTCCGGTTCGT
TGAAGCTCAGTCCGCCCGTGGCGGAGCCACACGCGCAGGACAAGGATTTC
TCCGCTCACGCGGTTTGCTCCGCTGCTGATAGCGACGAGGCGGCGGCGGC
GGCGGCGGCAATCGCGTTGGTAGCACCGGAGGACGGGCAAGAGCGGCGGC
AGGTGGAGAGCGACGACGACCAGGAGGGGCAAGGCCGGGAGGCTGAAGAG
CCACGCGGGAGAGCAGGAGCACCAACGCCTCCGCCTCCAGCGCTGATGTT
GCGGAGGCTCAGGGTCCACGATGCGTTCGTGGTGCGGTACGACGCCGCCG
CCCAGCGCTCCCTGCCCCTGCACACGGACCAGGGGGAGCTGTCCCTGACC
ATCTCCCTCAACGGCACCGGCGACTACGAGGGCGGGGGCACGTGGTTCGA
GGGTCTAGGCCGCGCCGTCCGGCCCGAGGAGGCCGGTCACGTGGTCGTGT
TTCCGGGGGGGAGGACCGTGCACGGGGGGAGGGAGGTGACGAGGGGGGTC
AGGTATATCCTAGCCGTGTTCTTGTACGAACACTGGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAAGAGGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12937:141..4768-

>mRNA_Ecto-sp13_S_contig12937.2414.1 ID=mRNA_Ecto-sp13_S_contig12937.2414.1|Name=mRNA_Ecto-sp13_S_contig12937.2414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2328bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12937:141..4768- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGAATCGCCCGTGGTCGAGTATTGCGAAGCGCTCGTTACCCAAGG
TGTTGACGTTCAACGCCAGGCACTCAAGGTCCTTGAGCCCGCGCTCAAAG
ACATGGAGGACGAAAACGACTTCCCAGATTTTGATGAAATCAGCAGCAGC
AGCAGTAGTAGCAAGGGGTTGGCGAGCGAGAGCGAGAGCGAAAGGGATGG
GAGTGTAGACAGCAGTGGCGGGAGGGCCCCCGCCACGTCGAGAAGCAGCA
CCGAGACCAACGCGAATAACATATCCGGGAACCGTTCCGGGAACTGTTCC
GAGAACGTTCCCGAGAACCGTTCTCGGGAACGCCTGGCGTGGCGCTGCGT
GGAGGCGGCGCGCTCGGCCTCCCGGCTCCTGCCTCGCCTGACGGCTCACG
CGCTGCTCCCGGCGTCCGCCCTCCGGCTGACCCACTCCTGCGCCCCCGCC
GTCCGTGTGCCTGCCGGAGACCGCCGCAGCTACAACGTCGGCGGAGGAGG
CGTCGTTTCTGGTGCTCCGACCGCCGGTGCGGCCGGGTGGCCCTTGACGG
TGGCAACCGTCGCCCTGAGGGATCTTGCCGCCGGGGAGGCGTTATCCTGC
TCCTGGGTGGACCCGGAAGAGACGTTTTCGGTCCGGATGGCCAGGCTCGA
GGAGTACGCCCAAGTCCCACCGTGCGCTTCCGATGATGATGATGATGATG
ATGATGTCCCAACCGGAGGTGATTGCGCCGCCTCTTCTTGTCCTCACGAA
GGCGGTGTGGGCGGCGGCGGCGGCGGCGGCGGCAGAGACTGCCGAGGTTC
AAAAGAGACTGGGGTATCCGGGAGACGCGGCGAAGGAACGCTAGCATCAC
TACAATCTCCCGACGGGCGTGGTTGCGGCTGCCCAAGGTGCCTGGTGGAA
AGCGGGGGGTTAGATGGCGACGGAAGCGAGGGAGTGTCGGGCGCAGGGGC
GGCGGAGCGGCTGCTCAAGGCTGCGCAGCAGGCGGTGGACGAAGACCGCT
TCGACGATGCGTTCGAAGCGTTATCAAGGGCAGCAAGGGCTGCGCCGGAC
AACGCGGATGTCCTCTACCGAGCCGGTGTTTGCGCCATTAACCAGGGACG
GTGGAGCAGGGCTCTCCGGCTGTGGAGGGACGGTCTGGCCGTATCCCCTG
ACCATCCGGAGCTGAAGCGAGAGGCGGAAAAGTACCAGGCACTCGCCTTC
TGGCTTGATCGTGGTAAACGGGATGCCAGTACCGACGCAAGAAGCAGTAG
CGGCGCTTTGGTAGGCGCGGTGACAGACAGCGGCAGCGCCGCTGCGGCGT
CGTCCCCTCCGTTTTCATCGCCACCGCAGCCGGTAACGACAGGCGGCCAG
GACGACGAGTTCGCCGCCCCGGCACTACTGCCCGCCGGAGAAACTTTCGA
CAACCTCGACGTGGACTTCATGGCCGGCGACGGGGAGTGGGTGTGCAGCA
CGCGGCTTCCCCTCCTTTCGGCATCCGAATGCTCCGCGATCATCAACGAG
GCCGAGGAGAAAGCCTCCGCCGCCGTCGCCGCGGCAGCCGGCGGCGGCGG
CAGCGGCGGCGGCGGCGGCGGCGGCTGGGGGACGTCGAGGCACTATGCCG
TCCCGACAACGGACGTGGCTGTGCGCGAGCTCCCGCGGACCCTTGCGTGG
TTCAACCGGGCGATGCGGACGCGGATAGGCACAACCGTTGCGGTCGCCGC
GGCGTTGGGCGGAGGCATTTTCGAGAGGCCGGGCCGACGGTCCGGTTCGT
TGAAGCTCAGTCCGCCCGTGGCGGAGCCACACGCGCAGGACAAGGATTTC
TCCGCTCACGCGGTTTGCTCCGCTGCTGATAGCGACGAGGCGGCGGCGGC
GGCGGCGGCAATCGCGTTGGTAGCACCGGAGGACGGGCAAGAGCGGCGGC
AGGTGGAGAGCGACGACGACCAGGAGGGGCAAGGCCGGGAGGCTGAAGAG
CCACGCGGGAGAGCAGGAGCACCAACGCCTCCGCCTCCAGCGCTGATGTT
GCGGAGGCTCAGGGTCCACGATGCGTTCGTGGTGCGGTACGACGCCGCCG
CCCAGCGCTCCCTGCCCCTGCACACGGACCAGGGGGAGCTGTCCCTGACC
ATCTCCCTCAACGGCACCGGCGACTACGAGGGCGGGGGCACGTGGTTCGA
GGGTCTAGGCCGCGCCGTCCGGCCCGAGGAGGCCGGTCACGTGGTCGTGT
TTCCGGGGGGGAGGACCGTGCACGGGGGGAGGGAGGTGACGAGGGGGGTC
AGGTATATCCTAGCCGTGTTCTTGTACGAACACTGGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAAGAGGAGGAG
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