mRNA_Ecto-sp13_S_contig102166.241.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig102166.241.1
Unique NamemRNA_Ecto-sp13_S_contig102166.241.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig102166.241.1 vs. uniprot
Match: A0A6H5L6M6_9PHAE (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M6_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.150e-42
Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    1 HDSLVVPVAPRSSPAERFLTVGGGAGQHRYSRFGNFRNQTGVCSSSQQRQQHGWSTNGTISAERDGHRGSSQDHGCDSSDGDGWRVSSQGFG 276
            HDSLVVP  PR+SPAERFLTVGGGAGQHRYSRFG+ RNQ G CSS QQRQQHGWST  T+SAERDGHRGSSQ HGC SSDGDGWRVS+QGFG
Sbjct:  258 HDSLVVPATPRTSPAERFLTVGGGAGQHRYSRFGSSRNQAGDCSSLQQRQQHGWSTASTMSAERDGHRGSSQHHGCGSSDGDGWRVSTQGFG 349
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BLAST of mRNA_Ecto-sp13_S_contig102166.241.1 vs. uniprot
Match: D8LSB0_ECTSI (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB0_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 5.320e-42
Identity = 81/92 (88.04%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    1 HDSLVVPVAPRSSPAERFLTVGGGAGQHRYSRFGNFRNQTGVCSSSQQRQQHGWSTNGTISAERDGHRGSSQDHGCDSSDGDGWRVSSQGFG 276
            HDSLVVPV PRSSPAE FLTVGGG GQHRYSRFG+ R QTG CSSSQQRQQHGWSTNGTISAER  HRGSSQDHG  SSDGDGWRVSSQGFG
Sbjct: 1008 HDSLVVPVTPRSSPAELFLTVGGGTGQHRYSRFGSCRKQTGDCSSSQQRQQHGWSTNGTISAERGEHRGSSQDHGSGSSDGDGWRVSSQGFG 1099
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102166.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6M6_9PHAE1.150e-4284.78DNA-directed primase/polymerase protein n=1 Tax=Ec... [more]
D8LSB0_ECTSI5.320e-4288.04DNA-directed primase/polymerase protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig102166contigEcto-sp13_S_contig102166:39..315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score158.7
Seed ortholog evalue1.3e-36
Seed eggNOG ortholog2880.D8LSB0
Preferred namePRIMPOL
Model size278
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000731,GO:0003674,GO:0003682,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006269,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0030145,GO:0031297,GO:0031974,GO:0032042,GO:0032774,GO:0033554,GO:0034061,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045005,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901576
Exons1
EggNOG free text desc.DNA primase activity
EggNOG OGs28JNI@1,2QS1Q@2759
Cds size276
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462516.1860373-CDS-Ecto-sp13_S_contig102166:38..3141681462516.1860373-CDS-Ecto-sp13_S_contig102166:38..314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102166 39..314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig102166.241.1prot_Ecto-sp13_S_contig102166.241.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig102166 39..314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig102166.241.1

>prot_Ecto-sp13_S_contig102166.241.1 ID=prot_Ecto-sp13_S_contig102166.241.1|Name=mRNA_Ecto-sp13_S_contig102166.241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
HDSLVVPVAPRSSPAERFLTVGGGAGQHRYSRFGNFRNQTGVCSSSQQRQ
QHGWSTNGTISAERDGHRGSSQDHGCDSSDGDGWRVSSQGFG
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mRNA from alignment at Ecto-sp13_S_contig102166:39..315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig102166.241.1 ID=mRNA_Ecto-sp13_S_contig102166.241.1|Name=mRNA_Ecto-sp13_S_contig102166.241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=277bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102166:39..315+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGACTCCCTCGTCGTTCCGGTCGCCCCACGGAGTTCCCCAGCGGAACG
CTTTCTGACCGTCGGCGGTGGGGCAGGTCAGCACCGCTATTCTAGGTTCG
GTAACTTCAGGAACCAAACAGGCGTTTGCTCTTCCTCGCAACAGCGGCAG
CAACACGGGTGGTCAACTAACGGCACGATATCTGCGGAAAGAGATGGGCA
CCGCGGCAGTTCGCAAGACCACGGCTGCGATAGCAGCGATGGCGACGGGT
GGAGGGTGTCGAGCCAGGGGTTCGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig102166:39..315+

>mRNA_Ecto-sp13_S_contig102166.241.1 ID=mRNA_Ecto-sp13_S_contig102166.241.1|Name=mRNA_Ecto-sp13_S_contig102166.241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102166:39..315+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGACTCCCTCGTCGTTCCGGTCGCCCCACGGAGTTCCCCAGCGGAACG
CTTTCTGACCGTCGGCGGTGGGGCAGGTCAGCACCGCTATTCTAGGTTCG
GTAACTTCAGGAACCAAACAGGCGTTTGCTCTTCCTCGCAACAGCGGCAG
CAACACGGGTGGTCAACTAACGGCACGATATCTGCGGAAAGAGATGGGCA
CCGCGGCAGTTCGCAAGACCACGGCTGCGATAGCAGCGATGGCGACGGGT
GGAGGGTGTCGAGCCAGGGGTTCGGG
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