mRNA_Ecto-sp13_S_contig12931.2409.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12931.2409.1
Unique NamemRNA_Ecto-sp13_S_contig12931.2409.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12931.2409.1 vs. uniprot
Match: A0A6H5K166_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K166_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.860e-30
Identity = 75/93 (80.65%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:  109 MAITPRSGSRHGWRAALMLSALAALLSSPGASDAVFATPPLLGGFAEAEPELARTAMGTAAVSPPSPPPRRRSYAETSPFAVDGGATAEAEEA 387
            M  TPRS S HGWRAAL+LSALAAL S P ASDAVFATPPLLGGFAE EPELA TAMGTAAVSP       RS AETSPFAVDGGATAEAEEA
Sbjct:    1 MPRTPRSRSHHGWRAALVLSALAALPSLPRASDAVFATPPLLGGFAEEEPELAPTAMGTAAVSPXXXX-XXRSCAETSPFAVDGGATAEAEEA 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12931.2409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K166_9PHAE6.860e-3080.65Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12931contigEcto-sp13_S_contig12931:48..2901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size387
Hectar predicted targeting categoryother localisation
Exons2
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462691.8199208-CDS-Ecto-sp13_S_contig12931:47..3641681462691.8199208-CDS-Ecto-sp13_S_contig12931:47..364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12931 48..364 -
1681462691.8292775-CDS-Ecto-sp13_S_contig12931:2831..29011681462691.8292775-CDS-Ecto-sp13_S_contig12931:2831..2901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12931 2832..2901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12931.2409.1prot_Ecto-sp13_S_contig12931.2409.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12931 48..2901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12931.2409.1

>prot_Ecto-sp13_S_contig12931.2409.1 ID=prot_Ecto-sp13_S_contig12931.2409.1|Name=mRNA_Ecto-sp13_S_contig12931.2409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
SIDCQVIFVGAAATTKTRAGESPDTRGVKTQGRGKRMAITPRSGSRHGWR
AALMLSALAALLSSPGASDAVFATPPLLGGFAEAEPELARTAMGTAAVSP
PSPPPRRRSYAETSPFAVDGGATAEAEEA
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mRNA from alignment at Ecto-sp13_S_contig12931:48..2901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12931.2409.1 ID=mRNA_Ecto-sp13_S_contig12931.2409.1|Name=mRNA_Ecto-sp13_S_contig12931.2409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2854bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12931:48..2901- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTATAGACTGCCAGGTTATTTTTGTGGGAGCGGCAGCCACGACAAAAAC
CAGAGCCGGAGAAAGTCCAGGTGAGCATCACGCAGCGCCACAAGGGGAAG
TAGCAGACATCGGCAACAACATGTGCCTGGGTTTGCTGGACACCACCACG
CGGTATGATCTTGGCTGCCTCATCTGAAGCAACCCTGCCTCGGAATTGCC
GCGGTAAGGTCTGTTTTAGAGAGCTGAATATGCACAGTTGCAACTTCGGC
AGCAGGGTATGCGCCCAGTAGACGTAGTGTACAGTCCTCGACAAACCATC
ACAGCAGCGCGAATGCGATCTTCCTGTACCCAATCGCACACCCGCAGGTG
CAGACTCTTCTACCCGCGGGCAGAACTCTCCACTTCGAAGATAACCATGA
GAGAGGCGTGGTTCAGCTTTGACTCCATTTACTCTGAAAATGCAGAGCCG
CCCTGGAGGCGGGGAGTTTTCTTCTGATTTCTGGTTCCCCGGCGGAAAGC
TGGATGTCTGTATGCCAAGTGCATCGTCCTGTCGTAGATACAGAAGGATG
CGTAGTTGGTTCCTCCAGCCGCTTTTTCTGGAGTTATACCTTCAGTCCAT
TCGATTGTAGAAGCCCAGGTGGTACAACGGAGCGACCCACCAATATTGCT
TCGAACGAGCCCGTGTAGGCTACAACAAGACACCCTTCCGCTGTGACGGT
CGGGTGGTTGCAACTTTACTCTCGTACAACTGCTGGGAACGCATCGGTGG
TTTGCGCTAGGCAGCGCCCCCACTGCAGCGGGACGTACAGCGGGGCCCCC
TCTATTATGCCGAGGCGTGTCCCGAGATTTTGCCGGCACTTCTCGGCATC
GGCACTAAAGAGGGCCCGCTGCTGTCAGGCCTCGAGAATACAAGTTTGCC
AAAACAGTGACCGTGCTCGGTAGCCCAATAGACTAGAGCCAGTTCAAAGT
AACCAGTCAACGATCCCAAAAACAGGTGGGTACGTCACCAAATCGCTGGG
AAAACACGACTCCACTTGAAACTTTGTAAGCAACACCAAAGCGTACTACG
TGCACTGTACACAATGCACACAGCCACAGGACCAACAGCAAAGGATCATG
TGCACGGCACAAGAGGATCAGGATCAGGCGAACTAGAACAGCCCATCAGC
TGGAGCAGCAGTGCTTGCATATGTATGCATGTACAGCAGCAGCAAGTCGT
AAGATATGCCGATGATGAGAGCGGAGGAAAAATAGACCGAAAAAAATGTG
CCATCAGACGCAGTTCGTGCTGTTTCTATCCGTTCTGTCGCCTCCCACAG
GCTACCAGGCGACCCTGAGCATGTGCGCCGCTAGCCCTGCACACACTGAT
TCTTGGAAGCTATCAAGTTTGCTCGTCCTCGATGAATTGGTTGCGATATG
TGCGTGAGCGTGTTTTGGTGGAAGCAAGAGATTTGGGTCTGATTCGGCTC
AAGAACCGGCCGCCGGCTCCTACTTCAGGCTTTTCGAAAATACGCTCACG
CACATATCGGGACCAATTCATCAAGGACGAGCAAAGTTGAGGGCTTGCGA
GAATTAGTGTTAGCAGGGATAGCGGTGCATCTGCACAGGGTCGCGTGTGG
CAACTTGTGAGCGGCGAGAGACGGGAGAAACATAGCTCGAGTATGTGCGA
ATTTTCTGCATCCCTTTTGTTATCGGATTTGCGACATGTGTCATCAGGCG
CCTCCGTCTCCAAGCAAAATAAAAGTCATCATCGCTTCGCTGCGGCGGCT
ATTTCAGTCTCTGAGCGTGGGCTTCGCACTCTAGGTCCATGGTAGAGAAG
TCGTATTCCTTTAAAGCCCTCGTCGCATGTAGGTATGTCCAATCGTGTCT
CTGGTGCGCTCCAAAAACGCGCCGTGAACGATCGAACGTTTGAAAAACAA
TCATGCTCTCAGTTTTTTCGGACACATTTTTTTGAGTGATCATCCCTCAA
CTCTTGCCCATGACAGCAAAAACGGGAGTAGCTTTTTCTCGACGGCAACG
CGTTGGATCGGGGCGCGGTTTTTTGTGTTGGTAGCGCAGAAACCAAAGCT
AAAATCACCAGGAATAGATTTTTGGGTTCAAGGGGGAAAAATGGAGCATC
GGCGAAAAGTACTCTAAATATCATACATGTGCGGCAACCAAAGTGCGGAG
AAAATCTTATCTGGTGCTTCCTGGAGTAGGTTCTACAGACTGGTGTCATG
CAATATGAAAAGTCAACTCTCCACCAGGAGACAGGAACACGTACTCCCAG
TTTCTTCTCTCTGTTGAAGTCAATTCCAAATCGGCCACCGAGGTTGTGAA
AAAAGCAACATTTTTTTGGTGTTCTGCGCGATTTTGTTTTTGGTTGTATA
CGGCGTGATCTCGAGGTCTAGCAGCATCGCTGCAACGCTGCCATGTCGTG
CCATCGTACAGCGGAGCATATCACTGCCACAAGTACAACTTTGTCAAGCC
GTTTATGCATACCATAGTAACAGCCCCCTCCCCCGACCACCACCACCACG
CTTCATTCCCATTCCGCCGTGCCCCCTCCTTCCCAAGACACCCGTGGTGT
AAAAACGCAAGGGAGGGGGAAAAGAATGGCAATAACACCGCGCTCCGGAA
GCCGTCACGGTTGGCGCGCGGCCCTGATGCTGTCGGCCTTGGCGGCGCTG
CTGTCATCGCCAGGAGCCTCCGATGCCGTGTTCGCGACGCCGCCACTGTT
GGGGGGATTTGCGGAAGCAGAACCTGAACTCGCGCGAACGGCCATGGGAA
CGGCAGCGGTGTCACCGCCTTCGCCGCCGCCGCGAAGAAGAAGCTACGCC
GAAACGTCGCCCTTTGCTGTGGACGGTGGTGCGACGGCGGAGGCGGAGGA
GGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12931:48..2901-

>mRNA_Ecto-sp13_S_contig12931.2409.1 ID=mRNA_Ecto-sp13_S_contig12931.2409.1|Name=mRNA_Ecto-sp13_S_contig12931.2409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12931:48..2901- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTATAGACTGCCAGGTTATTTTTGTGGGAGCGGCAGCCACGACAAAAAC
CAGAGCCGGAGAAAGTCCAGACACCCGTGGTGTAAAAACGCAAGGGAGGG
GGAAAAGAATGGCAATAACACCGCGCTCCGGAAGCCGTCACGGTTGGCGC
GCGGCCCTGATGCTGTCGGCCTTGGCGGCGCTGCTGTCATCGCCAGGAGC
CTCCGATGCCGTGTTCGCGACGCCGCCACTGTTGGGGGGATTTGCGGAAG
CAGAACCTGAACTCGCGCGAACGGCCATGGGAACGGCAGCGGTGTCACCG
CCTTCGCCGCCGCCGCGAAGAAGAAGCTACGCCGAAACGTCGCCCTTTGC
TGTGGACGGTGGTGCGACGGCGGAGGCGGAGGAGGCG
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