mRNA_Ecto-sp13_S_contig12921.2403.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12921.2403.1
Unique NamemRNA_Ecto-sp13_S_contig12921.2403.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12921.2403.1 vs. uniprot
Match: D7FJX7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJX7_ECTSI)

HSP 1 Score: 587 bits (1514), Expect = 2.090e-206
Identity = 385/471 (81.74%), Postives = 399/471 (84.71%), Query Frame = 1 
Query:    1 MMTNSGGLKRGRSDGIPDHENVKRVKTTAEPPGTLPTFGAGEVAGTTSSPAAAAATP-PTKQ------------GLWDRFDRVVFVATAMNTDGSGLSACLGLDKLRQESAARVAECQAQLQAERDAELLAEQQELFAGLHNLGVLRYAPVAHVARFQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEAFLKSHAGGGXXXXXXXXXXXXXX-AGPAMTSRGTARDMSAEGRPEGCAVGVSSKSAWTEEFLAEQEEAFAAAGEQVRQDLKEFRVLVEGPGAAAHEKLAADMAAAGATEAQFLEEQTVLAERIQQWQRREFVGANGGAVAGNPALADALAGEVGADRVGGATTTGGREIEEMGLVVGGPLGTIVEGEEEEXXXXXEGNRRQGFGTVSGKRRARFSIDGDCRSDTSSMGATDGEMSDLSPERAVRKGKTSLDAGAGKRKRGGEDAELAPEVRR 1371
            MMTNSGGLKRGRSDG+PDHE+VKRVK TAE P TLPTFGAGEV GTTSS         PTKQ            G WDR +RVVFVATAMNTDGSGLSACLGLDKLRQESAARVAECQAQL        LAEQQELFAGLHNLGVLRYAPVAHVARFQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EEEAFL+SHAGGG               AGPAMTS GTAR+MS EGRPEGCA GVSSKSAWTEEFLAEQEEAFAAAGEQVRQDLKEFRVLVEGPGAAAHEKLAADMAAAGATEA+FLEEQTVLAERIQQWQRREFVGANGGAVAGNPALADAL G+VGAD VGGATT GG+ IEEMGLVVGGPLGTIVE E   XXXXX  + ++GFGTVSGKR ARF+IDGDC SDTSSMG TDGEMSDLSPERAVRKGKTSLDAGA KRKRG EDAE+  EV+R
Sbjct:    1 MMTNSGGLKRGRSDGVPDHEDVKRVKITAEHPETLPTFGAGEVVGTTSSXXXXXXXXAPTKQAXXXXXXXXXXXGPWDRINRVVFVATAMNTDGSGLSACLGLDKLRQESAARVAECQAQLXXXXXXXXLAEQQELFAGLHNLGVLRYAPVAHVARFQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEEEAFLRSHAGGGAGPAAAAAPPAVRARAGPAMTSAGTAREMSTEGRPEGCAAGVSSKSAWTEEFLAEQEEAFAAAGEQVRQDLKEFRVLVEGPGAAAHEKLAADMAAAGATEAEFLEEQTVLAERIQQWQRREFVGANGGAVAGNPALADALDGKVGADGVGGATTPGGQGIEEMGLVVGGPLGTIVEEEXXXXXXXXGNSGQEGFGTVSGKRPARFAIDGDCGSDTSSMGVTDGEMSDLSPERAVRKGKTSLDAGAAKRKRGAEDAEVTLEVKR 471
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12921.2403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJX7_ECTSI2.090e-20681.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12921contigEcto-sp13_S_contig12921:2395..4109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1371
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_000820.1
Cds size1371
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462691.4954638-CDS-Ecto-sp13_S_contig12921:2394..26071681462691.4954638-CDS-Ecto-sp13_S_contig12921:2394..2607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12921 2395..2607 -
1681462691.507925-CDS-Ecto-sp13_S_contig12921:2951..41091681462691.507925-CDS-Ecto-sp13_S_contig12921:2951..4109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12921 2952..4109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12921.2403.1prot_Ecto-sp13_S_contig12921.2403.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12921 2395..4109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12921.2403.1

>prot_Ecto-sp13_S_contig12921.2403.1 ID=prot_Ecto-sp13_S_contig12921.2403.1|Name=mRNA_Ecto-sp13_S_contig12921.2403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=457bp
MMTNSGGLKRGRSDGIPDHENVKRVKTTAEPPGTLPTFGAGEVAGTTSSP
AAAAATPPTKQGLWDRFDRVVFVATAMNTDGSGLSACLGLDKLRQESAAR
VAECQAQLQAERDAELLAEQQELFAGLHNLGVLRYAPVAHVARFQEELSA
EQQELWHVAEGLRGLRKGPAGRVARCREEFRIEEEAFLKSHAGGGAGPAA
AAAAAARARAGPAMTSRGTARDMSAEGRPEGCAVGVSSKSAWTEEFLAEQ
EEAFAAAGEQVRQDLKEFRVLVEGPGAAAHEKLAADMAAAGATEAQFLEE
QTVLAERIQQWQRREFVGANGGAVAGNPALADALAGEVGADRVGGATTTG
GREIEEMGLVVGGPLGTIVEGEEEEERDEEEGNRRQGFGTVSGKRRARFS
IDGDCRSDTSSMGATDGEMSDLSPERAVRKGKTSLDAGAGKRKRGGEDAE
LAPEVRR
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mRNA from alignment at Ecto-sp13_S_contig12921:2395..4109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12921.2403.1 ID=mRNA_Ecto-sp13_S_contig12921.2403.1|Name=mRNA_Ecto-sp13_S_contig12921.2403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12921:2395..4109- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGACCAACAGCGGTGGGCTCAAGCGAGGGCGATCGGACGGCATCCC
GGATCATGAGAACGTGAAGCGCGTTAAGACTACGGCTGAACCCCCCGGGA
CTCTGCCGACATTCGGCGCGGGCGAGGTCGCGGGAACAACGTCGTCACCA
GCAGCAGCGGCAGCAACGCCACCCACGAAGCAAGGGCTTTGGGACAGGTT
CGACCGCGTGGTGTTCGTTGCCACGGCCATGAACACGGACGGGAGCGGCC
TCTCCGCCTGCCTCGGCCTCGACAAGCTTCGGCAGGAGTCCGCCGCCCGC
GTGGCTGAATGTCAGGCCCAGCTCCAGGCCGAGCGCGACGCCGAGCTCCT
GGCCGAGCAACAGGAGCTCTTCGCGGGGCTGCACAACCTAGGCGTACTGC
GGTACGCGCCTGTCGCGCACGTAGCCAGGTTCCAGGAGGAGCTGTCCGCG
GAGCAACAGGAGCTGTGGCATGTGGCAGAGGGTTTGCGGGGACTGCGGAA
AGGACCCGCTGGCCGGGTGGCGAGGTGCCGGGAGGAGTTCCGCATCGAGG
AGGAGGCGTTCCTGAAGTCGCACGCCGGGGGAGGAGCGGGGCCGGCGGCG
GCCGCGGCAGCGGCGGCCAGGGCACGAGCGGGGCCGGCGATGACCTCTAG
GGGAACGGCCCGCGATATGTCGGCGGAGGGGAGGCCAGAGGGGTGTGCTG
TCGGCGTGAGTTCCAAGTCCGCGTGGACAGAGGAGTTCCTCGCTGAACAG
GAGGAGGCGTTCGCTGCGGCCGGGGAGCAGGTGCGCCAGGACCTCAAGGA
GTTCCGCGTGCTGGTGGAGGGCCCGGGGGCGGCGGCGCACGAGAAGCTCG
CGGCAGACATGGCGGCGGCGGGGGCAACGGAGGCACAGTTCTTGGAGGAA
CAGACCGTCCTGGCGGAGCGCATCCAGCAATGGCAGCGGCGGGAGTTCGT
GGGTGCGAATGGGGGAGCGGTGGCGGGCAACCCGGCGCTCGCGGATGCCC
TTGCCGGAGAGGTGGGGGCTGACAGGGTGGGGGGCGCAACTACGACGGGA
GGACGAGAAATCGAGGAGATGGGTCTGGTGGTAGGCGGACCGCTAGGCAC
TATCGTAGAGGGAGAGGAGGAGGAGGAAAGAGATGAGGAGGAAGGGAACA
GGAGGCAGGTGGGTTTTGATACGGTGTGTGAAGGCGGGTGGGTTGCGTGG
GAACTATTTGCCTTATTGATGGTCTGTCATGTATTGTGGTCAACGTGGTG
CTAAGGACTCCCTTTGTTGCCGCGATTGGACCAATTATATGGAGGACATT
GGTAGCGTGGGCAGTACTGCGATCCGCGCGAGTCAGGAACATCTCCCGTC
GCAGCACCTCCCGCAGTACCAGCAGCCCCCGTCTACATTTGTGAAACAAT
ACGCTCCGTAAGCATTTTTAGGTGTATTCTTGACACACCCACGCCAACGA
CGTTGTACCGTACATTTTCCCCCCTCGCCCTTCCTCCTCCCCTCTACCGC
AGGGCTTCGGCACCGTGAGCGGCAAGCGACGGGCCCGGTTTAGCATAGAC
GGCGACTGCCGCTCTGACACCTCGAGCATGGGAGCGACGGACGGCGAGAT
GAGCGACTTGTCCCCCGAAAGGGCGGTGCGCAAAGGAAAAACCTCTCTCG
ACGCCGGCGCAGGCAAGAGGAAGAGGGGGGGCGAGGACGCAGAGTTGGCC
CCAGAGGTAAGACGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12921:2395..4109-

>mRNA_Ecto-sp13_S_contig12921.2403.1 ID=mRNA_Ecto-sp13_S_contig12921.2403.1|Name=mRNA_Ecto-sp13_S_contig12921.2403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12921:2395..4109- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGACCAACAGCGGTGGGCTCAAGCGAGGGCGATCGGACGGCATCCC
GGATCATGAGAACGTGAAGCGCGTTAAGACTACGGCTGAACCCCCCGGGA
CTCTGCCGACATTCGGCGCGGGCGAGGTCGCGGGAACAACGTCGTCACCA
GCAGCAGCGGCAGCAACGCCACCCACGAAGCAAGGGCTTTGGGACAGGTT
CGACCGCGTGGTGTTCGTTGCCACGGCCATGAACACGGACGGGAGCGGCC
TCTCCGCCTGCCTCGGCCTCGACAAGCTTCGGCAGGAGTCCGCCGCCCGC
GTGGCTGAATGTCAGGCCCAGCTCCAGGCCGAGCGCGACGCCGAGCTCCT
GGCCGAGCAACAGGAGCTCTTCGCGGGGCTGCACAACCTAGGCGTACTGC
GGTACGCGCCTGTCGCGCACGTAGCCAGGTTCCAGGAGGAGCTGTCCGCG
GAGCAACAGGAGCTGTGGCATGTGGCAGAGGGTTTGCGGGGACTGCGGAA
AGGACCCGCTGGCCGGGTGGCGAGGTGCCGGGAGGAGTTCCGCATCGAGG
AGGAGGCGTTCCTGAAGTCGCACGCCGGGGGAGGAGCGGGGCCGGCGGCG
GCCGCGGCAGCGGCGGCCAGGGCACGAGCGGGGCCGGCGATGACCTCTAG
GGGAACGGCCCGCGATATGTCGGCGGAGGGGAGGCCAGAGGGGTGTGCTG
TCGGCGTGAGTTCCAAGTCCGCGTGGACAGAGGAGTTCCTCGCTGAACAG
GAGGAGGCGTTCGCTGCGGCCGGGGAGCAGGTGCGCCAGGACCTCAAGGA
GTTCCGCGTGCTGGTGGAGGGCCCGGGGGCGGCGGCGCACGAGAAGCTCG
CGGCAGACATGGCGGCGGCGGGGGCAACGGAGGCACAGTTCTTGGAGGAA
CAGACCGTCCTGGCGGAGCGCATCCAGCAATGGCAGCGGCGGGAGTTCGT
GGGTGCGAATGGGGGAGCGGTGGCGGGCAACCCGGCGCTCGCGGATGCCC
TTGCCGGAGAGGTGGGGGCTGACAGGGTGGGGGGCGCAACTACGACGGGA
GGACGAGAAATCGAGGAGATGGGTCTGGTGGTAGGCGGACCGCTAGGCAC
TATCGTAGAGGGAGAGGAGGAGGAGGAAAGAGATGAGGAGGAAGGGAACA
GGAGGCAGGGCTTCGGCACCGTGAGCGGCAAGCGACGGGCCCGGTTTAGC
ATAGACGGCGACTGCCGCTCTGACACCTCGAGCATGGGAGCGACGGACGG
CGAGATGAGCGACTTGTCCCCCGAAAGGGCGGTGCGCAAAGGAAAAACCT
CTCTCGACGCCGGCGCAGGCAAGAGGAAGAGGGGGGGCGAGGACGCAGAG
TTGGCCCCAGAGGTAAGACGT
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