mRNA_Ecto-sp13_S_contig100060.24.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100060.24.1
Unique NamemRNA_Ecto-sp13_S_contig100060.24.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: D7G8R2_ECTSI (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R2_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 4.040e-42
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1
Query:    1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210
            HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMP+SRLGGNTYGRLGSVFDIPR
Sbjct:  167 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPISRLGGNTYGRLGSVFDIPR 236          
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A6H5L1F6_9PHAE (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.360e-40
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1
Query:    1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210
            HTYDIVNSKGDVTTTVVFGEVVMFHVF+HLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDI R
Sbjct:  209 HTYDIVNSKGDVTTTVVFGEVVMFHVFTHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDISR 278          
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: L1IE62_GUITC (Flavin_Reduct domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IE62_GUITC)

HSP 1 Score: 96.7 bits (239), Expect = 7.150e-23
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210
            H YD+ N++G VTTTVV GE+V FHV   +L+ NGAGEGKPTVN + L P+SRLGG TYGR  +VFD+PR
Sbjct:  189 HQYDMKNAQGKVTTTVVIGEIVAFHVHEGVLEMNGAGEGKPTVNFDALKPLSRLGGCTYGRTTAVFDLPR 258          
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A8J6C7I8_DIALT (Flavin_Reduct domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C7I8_DIALT)

HSP 1 Score: 85.5 bits (210), Expect = 1.710e-18
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210
            H +++ N+KG+V+ T++ GEVVM H+ + + + +GAG GKPTV  + L PMSRLGGNTYGR  S FD+PR
Sbjct:  201 HRHEMRNAKGEVSATLILGEVVMIHLAAGVCELDGAGAGKPTVRFDALQPMSRLGGNTYGRTTSTFDLPR 270          
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A7S4C094_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C094_CHRCT)

HSP 1 Score: 82.8 bits (203), Expect = 1.750e-17
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210
            H +++VN+ G VT+T+V GEVVM H  S +   +GAGEGKPT++     P+SRLGG+TYGR  S+FD+PR
Sbjct:  199 HRHEVVNASGVVTSTMVVGEVVMMHAASAVCNVDGAGEGKPTIDFAKFQPISRLGGDTYGRTLSMFDLPR 268          
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A835ZDF3_9STRA (Flavin_Reduct domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.690e-15
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210
            H Y++ N+ G  TTTVV G+VVMFHV   +L     G  KPTV+ + L P++RLGGNTYG + +VFD+PR
Sbjct:  193 HKYEVKNAAGTDTTTVVIGQVVMFHVLEAVLDTVTHGPTKPTVHFDKLRPIARLGGNTYGIVNTVFDLPR 262          
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: C1N2T0_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N2T0_MICPC)

HSP 1 Score: 73.9 bits (180), Expect = 1.580e-14
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210
            H+YD+ N+ G VT T + GEVVMFH+  H    N   EGKP V+     P+ RLGG+TYGR+GS +D+PR
Sbjct:  138 HSYDVTNADGVVTATAIVGEVVMFHI--HEAVANVEWEGKPRVDMARYAPVCRLGGDTYGRVGSGYDLPR 205          
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A7S0L4A2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L4A2_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 1.660e-14
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    7 YDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210
            ++I+N  G  T TVVFGEVV       +  ENGAGEGKPT+  +    ++RLGGNTYGR+ S FD+ R
Sbjct:  188 HEIINKAGVTTATVVFGEVVKVWAAKGVCDENGAGEGKPTIKFDNYRALARLGGNTYGRVTSTFDLDR 255          
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A8J9WUW2_9CHLO (Uncharacterized protein YwrF n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WUW2_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 8.800e-13
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210
            HTYD+ NSKG+VT T++ GEVV+ HV   +  + G   G   V  +   P+SRLGGNTY R+   +D+PR
Sbjct:  212 HTYDVKNSKGEVTATIIIGEVVLVHVLEAVTGKTG--HGHIYVEFDKYAPVSRLGGNTYARITETYDLPR 279          
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Match: A0A2P6VCT5_9CHLO (Flavin reductase-FMN-binding domain containing n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VCT5_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 6.510e-12
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMPMSRLGGNTYGRLGSVFDIPR 210
            H Y++ N+ GDVT T+V GEVVM HV   +   + +G  K  V+ E   P+SRLGGNTY R   +FD+PR
Sbjct:  218 HNYEVKNAAGDVTGTIVIGEVVMMHVHEGVAGRSPSG--KLVVDIEKYKPVSRLGGNTYARTSGLFDLPR 285          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100060.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G8R2_ECTSI4.040e-4298.57Flavin_Reduct domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L1F6_9PHAE1.360e-4097.14Flavin_Reduct domain-containing protein n=1 Tax=Ec... [more]
L1IE62_GUITC7.150e-2364.29Flavin_Reduct domain-containing protein n=2 Tax=Gu... [more]
A0A8J6C7I8_DIALT1.710e-1854.29Flavin_Reduct domain-containing protein n=2 Tax=Di... [more]
A0A7S4C094_CHRCT1.750e-1754.29Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A835ZDF3_9STRA1.690e-1552.86Flavin_Reduct domain-containing protein n=1 Tax=Tr... [more]
C1N2T0_MICPC1.580e-1451.43Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A7S0L4A2_9EUKA1.660e-1451.47Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8J9WUW2_9CHLO8.800e-1347.14Uncharacterized protein YwrF n=1 Tax=Coccomyxa sp.... [more]
A0A2P6VCT5_9CHLO6.510e-1248.57Flavin reductase-FMN-binding domain containing n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100060contigEcto-sp13_S_contig100060:9..218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score146.0
Seed ortholog evalue6.7e-33
Seed eggNOG ortholog2880.D7G8R2
Model size210
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Flavin reductase like domain
EggNOG OGs2CXSN@1,2RZGA@2759
Cds size210
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462499.6424127-CDS-Ecto-sp13_S_contig100060:8..2181681462499.6424127-CDS-Ecto-sp13_S_contig100060:8..218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100060 9..218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100060.24.1prot_Ecto-sp13_S_contig100060.24.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100060 9..218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100060.24.1

>prot_Ecto-sp13_S_contig100060.24.1 ID=prot_Ecto-sp13_S_contig100060.24.1|Name=mRNA_Ecto-sp13_S_contig100060.24.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
HTYDIVNSKGDVTTTVVFGEVVMFHVFSHLLKENGAGEGKPTVNHEGLMP
MSRLGGNTYGRLGSVFDIPR
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mRNA from alignment at Ecto-sp13_S_contig100060:9..218-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100060.24.1 ID=mRNA_Ecto-sp13_S_contig100060.24.1|Name=mRNA_Ecto-sp13_S_contig100060.24.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100060:9..218- (Ectocarpus species13 EcNAP12_S_4_19m)
CACACGTACGACATCGTCAACAGCAAGGGCGACGTCACAACCACAGTTGT ATTCGGCGAAGTGGTTATGTTCCACGTGTTTTCGCACCTGCTGAAAGAGA ACGGCGCCGGGGAGGGCAAACCGACGGTCAACCACGAGGGCTTGATGCCT ATGTCACGCCTCGGGGGAAACACTTACGGTCGGCTGGGCTCTGTGTTTGA TATTCCCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100060:9..218-

>mRNA_Ecto-sp13_S_contig100060.24.1 ID=mRNA_Ecto-sp13_S_contig100060.24.1|Name=mRNA_Ecto-sp13_S_contig100060.24.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100060:9..218- (Ectocarpus species13 EcNAP12_S_4_19m)
CACACGTACGACATCGTCAACAGCAAGGGCGACGTCACAACCACAGTTGT
ATTCGGCGAAGTGGTTATGTTCCACGTGTTTTCGCACCTGCTGAAAGAGA
ACGGCGCCGGGGAGGGCAAACCGACGGTCAACCACGAGGGCTTGATGCCT
ATGTCACGCCTCGGGGGAAACACTTACGGTCGGCTGGGCTCTGTGTTTGA
TATTCCCCGT
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