mRNA_Ecto-sp13_S_contig12916.2398.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12916.2398.1
Unique NamemRNA_Ecto-sp13_S_contig12916.2398.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Match: D7FRU9_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU9_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 3.050e-74
Identity = 127/149 (85.23%), Postives = 128/149 (85.91%), Query Frame = 1 
Query:    1 QVYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKRGASAEDRGIIPRAIEQVFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVREMDAYGQAMLLL 447
            +VYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKRGASAEDRGIIPRAIEQVFAHIQRNASPR                   MRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVV EMDA GQAMLLL
Sbjct:  363 KVYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKRGASAEDRGIIPRAIEQVFAHIQRNASPR-------------------MRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVSEMDACGQAMLLL 492
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Match: A0A7S1TZ06_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZ06_9STRA)

HSP 1 Score: 186 bits (472), Expect = 9.590e-56
Identity = 98/144 (68.06%), Postives = 110/144 (76.39%), Query Frame = 1 
Query:    1 QVYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKRGASAEDRGIIPRAIEQVFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVRE-MDAYG 429
            +VY+TTA  VVDS+LQGYNAT+FAYGQTGTGKT+TMEGF    + E+RGIIPRAIEQ+F HIQ +ASP                    MRFLVRASYLQIYNEQISDLLKPERNNLTIREDK+RGV+VE LSEWVVR   + YG
Sbjct:   49 KVYETTARPVVDSALQGYNATIFAYGQTGTGKTYTMEGFNIEGNVEERGIIPRAIEQIFGHIQTHASPT-------------------MRFLVRASYLQIYNEQISDLLKPERNNLTIREDKRRGVYVESLSEWVVRSPAEIYG 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Match: A0A7R9U2G0_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2G0_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.260e-55
Identity = 99/144 (68.75%), Postives = 110/144 (76.39%), Query Frame = 1 
Query:    1 QVYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKRGASAEDRGIIPRAIEQVFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVRE-MDAYG 429
            +VY+TTA  VVDS+LQGYNAT+FAYGQTGTGKT+TMEGF    + E+RGIIPRAIEQ+F HIQ NASP                    MRFLVRASYLQIYNEQISDLLKPERNNLTIREDK+RGV+VE LSEWVVR   + YG
Sbjct:   27 RVYETTARPVVDSALQGYNATIFAYGQTGTGKTYTMEGFNIEGNVEERGIIPRAIEQIFGHIQSNASPT-------------------MRFLVRASYLQIYNEQISDLLKPERNNLTIREDKRRGVYVENLSEWVVRSPAEIYG 151
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Match: A0A6A5AE16_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AE16_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.270e-54
Identity = 99/138 (71.74%), Postives = 106/138 (76.81%), Query Frame = 1 
Query:    4 VYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKR--GASAEDRGIIPRAIEQVFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR 411
            VY+ TA  VV+SSL+GYNAT+FAYGQTGTGKT+TMEGF    G+S EDRGIIPRAIEQ+F HIQ N S R                   MRFLVRASYLQIYNE ISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR
Sbjct:   93 VYENTAKAVVESSLEGYNATIFAYGQTGTGKTYTMEGFNSSGGSSLEDRGIIPRAIEQIFMHIQANMSAR-------------------MRFLVRASYLQIYNESISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR 211
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Match: A0A3L6VKQ6_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VKQ6_9STRA)

HSP 1 Score: 185 bits (469), Expect = 3.610e-54
Identity = 99/138 (71.74%), Postives = 106/138 (76.81%), Query Frame = 1 
Query:    4 VYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKR--GASAEDRGIIPRAIEQVFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR 411
            VY+ TA  VV+SSL+GYNAT+FAYGQTGTGKT+TMEGF    G+S EDRGIIPRAIEQ+F HIQ N S R                   MRFLVRASYLQIYNE ISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR
Sbjct:  158 VYENTAKAVVESSLEGYNATIFAYGQTGTGKTYTMEGFNSSGGSSLEDRGIIPRAIEQIFMHIQANMSAR-------------------MRFLVRASYLQIYNESISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR 276
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Match: A0A813ALJ1_9DINO (KLP1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ALJ1_9DINO)

HSP 1 Score: 177 bits (450), Expect = 3.310e-53
Identity = 97/143 (67.83%), Postives = 107/143 (74.83%), Query Frame = 1 
Query:    4 VYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKRGASAEDRGIIPRAIEQVFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVRE-MDAYG 429
            VY+TTA  VV+SSLQGYNAT+FAYGQTGTGKT+TMEGF    SAE RGIIPRAIEQ+F HI+ + SPR                   MRFLVRASYLQIYNE ISDLLKPER NL+IRE KK+GVFVEGLSEWVVR   + YG
Sbjct:  105 VYETTAKAVVESSLQGYNATIFAYGQTGTGKTYTMEGFN---SAEQRGIIPRAIEQIFRHIRNSVSPR-------------------MRFLVRASYLQIYNEVISDLLKPERTNLSIREGKKKGVFVEGLSEWVVRSPQEIYG 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Match: A0A7S3HBF7_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBF7_9STRA)

HSP 1 Score: 190 bits (482), Expect = 3.600e-53
Identity = 100/144 (69.44%), Postives = 111/144 (77.08%), Query Frame = 1 
Query:    1 QVYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKRGASAEDRGIIPRAIEQVFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVRE-MDAYG 429
            +VY+TTA  VVDS+LQGYNAT+FAYGQTGTGKTFTMEGF R    E RGIIPRAIEQ+F HIQ+ ASP+                   MRFLVRASYLQIYNEQISDLLKPERNNLTIREDK+RGV+V+GLSEWVVR   + YG
Sbjct:  111 KVYETTARTVVDSALQGYNATIFAYGQTGTGKTFTMEGFNREGGLEARGIIPRAIEQIFGHIQKFASPK-------------------MRFLVRASYLQIYNEQISDLLKPERNNLTIREDKRRGVYVDGLSEWVVRSPAEIYG 235
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Match: A0A1V9ZZT9_9STRA (Kinesin-like protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZT9_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.090e-51
Identity = 99/138 (71.74%), Postives = 106/138 (76.81%), Query Frame = 1 
Query:    4 VYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKR--GASAEDRGIIPRAIEQVFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR 411
            VY+ TA  VV+SSL+GYNAT+FAYGQTGTGKT+TMEGF    G+S EDRGIIPRAIEQ+F HIQ N S R                   MRFLVRASYLQIYNE ISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR
Sbjct:  145 VYENTAKAVVESSLEGYNATIFAYGQTGTGKTYTMEGFNSSGGSSLEDRGIIPRAIEQIFMHIQANVSAR-------------------MRFLVRASYLQIYNESISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR 263
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Match: T0S7Q7_SAPDV (Kinesin-like protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S7Q7_SAPDV)

HSP 1 Score: 185 bits (470), Expect = 1.180e-51
Identity = 99/138 (71.74%), Postives = 106/138 (76.81%), Query Frame = 1 
Query:    4 VYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKR--GASAEDRGIIPRAIEQVFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR 411
            VY+ TA  VV+SSL+GYNAT+FAYGQTGTGKT+TMEGF    G+S EDRGIIPRAIEQ+F HIQ N S R                   MRFLVRASYLQIYNE ISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR
Sbjct:  155 VYENTAKAVVESSLEGYNATIFAYGQTGTGKTYTMEGFNSSGGSSLEDRGIIPRAIEQIFLHIQANVSAR-------------------MRFLVRASYLQIYNESISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR 273
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Match: A0A1V9YCV0_9STRA (Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCV0_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.200e-51
Identity = 99/138 (71.74%), Postives = 106/138 (76.81%), Query Frame = 1 
Query:    4 VYDTTAMEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKR--GASAEDRGIIPRAIEQVFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR 411
            VY+ TA  VV+SSL+GYNAT+FAYGQTGTGKT+TMEGF    G+S EDRGIIPRAIEQ+F HIQ N S R                   MRFLVRASYLQIYNE ISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR
Sbjct:  144 VYENTAKAVVESSLEGYNATIFAYGQTGTGKTYTMEGFNSSGGSSLEDRGIIPRAIEQIFMHIQANVSAR-------------------MRFLVRASYLQIYNESISDLLKPERNNLTIREDKKRGVFVEGLSEWVVR 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12916.2398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRU9_ECTSI3.050e-7485.23Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A7S1TZ06_9STRA9.590e-5668.06Kinesin-like protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9U2G0_9STRA1.260e-5568.75Kinesin-like protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6A5AE16_9STRA2.270e-5471.74Kinesin-like protein (Fragment) n=1 Tax=Aphanomyce... [more]
A0A3L6VKQ6_9STRA3.610e-5471.74Kinesin-like protein (Fragment) n=1 Tax=Aphanomyce... [more]
A0A813ALJ1_9DINO3.310e-5367.83KLP1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A7S3HBF7_9STRA3.600e-5369.44Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A1V9ZZT9_9STRA1.090e-5171.74Kinesin-like protein n=1 Tax=Thraustotheca clavata... [more]
T0S7Q7_SAPDV1.180e-5171.74Kinesin-like protein n=2 Tax=Saprolegnia TaxID=476... [more]
A0A1V9YCV0_9STRA1.200e-5171.74Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12916contigEcto-sp13_S_contig12916:1696..2562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score228.0
Seed ortholog evalue2.7e-57
Seed eggNOG ortholog2880.D7FRU9
Preferred nameKIF26B
Model size450
KEGG koko:K02350,ko:K10404
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG ModuleM00293
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001558,GO:0001560,GO:0001655,GO:0001656,GO:0001657,GO:0001667,GO:0001764,GO:0001822,GO:0001823,GO:0002009,GO:0002119,GO:0002164,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003338,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005871,GO:0005875,GO:0006810,GO:0006890,GO:0006928,GO:0006935,GO:0007017,GO:0007018,GO:0007154,GO:0007163,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007610,GO:0008017,GO:0008078,GO:0008092,GO:0008150,GO:0009605,GO:0009653,GO:0009791,GO:0009887,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010646,GO:0010648,GO:0010721,GO:0015630,GO:0015631,GO:0016043,GO:0016192,GO:0016462,GO:0016477,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018991,GO:0019098,GO:0019882,GO:0019884,GO:0019886,GO:0022008,GO:0022407,GO:0022409,GO:0022414,GO:0023051,GO:0023057,GO:0030010,GO:0030030,GO:0030154,GO:0030155,GO:0030182,GO:0030334,GO:0030336,GO:0031175,GO:0031668,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032989,GO:0032990,GO:0032991,GO:0035239,GO:0035295,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040013,GO:0040025,GO:0042221,GO:0042330,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045785,GO:0048002,GO:0048193,GO:0048468,GO:0048483,GO:0048484,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048589,GO:0048609,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051270,GO:0051271,GO:0051674,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060429,GO:0060560,GO:0060562,GO:0060675,GO:0060677,GO:0060993,GO:0061326,GO:0061333,GO:0061564,GO:0065007,GO:0071496,GO:0071840,GO:0072001,GO:0072006,GO:0072009,GO:0072028,GO:0072033,GO:0072073,GO:0072077,GO:0072078,GO:0072080,GO:0072087,GO:0072088,GO:0072092,GO:0072093,GO:0072163,GO:0072164,GO:0072171,GO:0072210,GO:0072273,GO:0072283,GO:0097485,GO:0120036,GO:0120039,GO:1905483,GO:1905484,GO:2000026,GO:2000145,GO:2000146,GO:2001222,GO:2001223
Exons3
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-23_004020.1
EC2.7.7.7
Cds size429
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462691.062437-UTR-Ecto-sp13_S_contig12916:1695..17161681462691.062437-UTR-Ecto-sp13_S_contig12916:1695..1716Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12916 1696..1716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462691.075506-CDS-Ecto-sp13_S_contig12916:1716..17791681462691.075506-CDS-Ecto-sp13_S_contig12916:1716..1779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12916 1717..1779 +
1681462691.0853012-CDS-Ecto-sp13_S_contig12916:2050..21841681462691.0853012-CDS-Ecto-sp13_S_contig12916:2050..2184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12916 2051..2184 +
1681462691.094581-CDS-Ecto-sp13_S_contig12916:2330..25621681462691.094581-CDS-Ecto-sp13_S_contig12916:2330..2562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12916 2331..2562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12916.2398.1prot_Ecto-sp13_S_contig12916.2398.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12916 1717..2562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12916.2398.1

>prot_Ecto-sp13_S_contig12916.2398.1 ID=prot_Ecto-sp13_S_contig12916.2398.1|Name=mRNA_Ecto-sp13_S_contig12916.2398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MEVVDSSLQGYNATVFAYGQTGTGKTFTMEGFKRGASAEDRGIIPRAIEQ
VFAHIQRNASPRWETGLNRTRSQITPHGNLRMRFLVRASYLQIYNEQISD
LLKPERNNLTIREDKKRGVFVEGLSEWVVREMDAYGQAMLLL*
back to top

mRNA from alignment at Ecto-sp13_S_contig12916:1696..2562+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12916.2398.1 ID=mRNA_Ecto-sp13_S_contig12916.2398.1|Name=mRNA_Ecto-sp13_S_contig12916.2398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12916:1696..2562+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTACGACACAACCGCAATGGAGGTTGTTGACAGCAGCCTTCAGGG
CTACAACGCGACGGTCTTTGCATACGGGCAGACGGTAAGATAGTTCCACT
GCCACGTGCCCTTCGATGATAGGGAGCCTAGAACCCCCCGGCATCTAACA
CATGACCCCTCAAAAATAGATTGAAGTATTTGCTCAGGTGAGCCCAGCCT
CCTCCGAAGTGTCTCAGCGCATACACCTCCGTCAGTCCCAGAATCGCACA
AAAAACCATGCCTTTTTTTTCCGTCCGATATATTTCTCTCCCGATCGACC
TGAAACACCTAAAATAACTTCTCAACCATTCACTTCCCGGTCTCAATCAT
AACAGGGCACCGGCAAAACGTTCACAATGGAAGGTTTCAAGCGGGGGGCG
TCGGCCGAAGACCGCGGGATAATTCCTCGCGCTATCGAGCAGGTGTTTGC
CCACATACAAAGGAATGCGTCTCCGAGGTGGGAAACTGGGTGGGGCCAAG
GTTTTGGCTCACACCGGCAGATAGCCAGAGAGGAAGTCAAACGCGGCTCA
TTCCTTTGGCGTAAGTGGCGAATTGCCAACTGTGCCTGGTTTGCTTCAGT
GCTGTGCTTCCACATGTCCCCGTTATTTGTGCCAGGCTAAACCGAACTCG
ATCTCAAATCACCCCTCACGGAAACCTCAGGATGAGGTTTCTGGTTCGGG
CCTCCTACCTACAAATCTACAACGAGCAGATATCGGACCTGCTAAAGCCG
GAGAGGAACAACCTAACCATCCGGGAGGACAAGAAGAGAGGCGTGTTTGT
CGAGGGCCTCTCGGAATGGGTGGTGAGGGAGATGGACGCGTATGGACAAG
CCATGCTGCTACTGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12916:1696..2562+

>mRNA_Ecto-sp13_S_contig12916.2398.1 ID=mRNA_Ecto-sp13_S_contig12916.2398.1|Name=mRNA_Ecto-sp13_S_contig12916.2398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12916:1696..2562+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGTTGTTGACAGCAGCCTTCAGGGCTACAACGCGACGGTCTTTGC
ATACGGGCAGACGGGCACCGGCAAAACGTTCACAATGGAAGGTTTCAAGC
GGGGGGCGTCGGCCGAAGACCGCGGGATAATTCCTCGCGCTATCGAGCAG
GTGTTTGCCCACATACAAAGGAATGCGTCTCCGAGGTGGGAAACTGGGCT
AAACCGAACTCGATCTCAAATCACCCCTCACGGAAACCTCAGGATGAGGT
TTCTGGTTCGGGCCTCCTACCTACAAATCTACAACGAGCAGATATCGGAC
CTGCTAAAGCCGGAGAGGAACAACCTAACCATCCGGGAGGACAAGAAGAG
AGGCGTGTTTGTCGAGGGCCTCTCGGAATGGGTGGTGAGGGAGATGGACG
CGTATGGACAAGCCATGCTGCTACTGTAG
back to top