mRNA_Ecto-sp13_S_contig12914.2397.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12914.2397.1
Unique NamemRNA_Ecto-sp13_S_contig12914.2397.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12914.2397.1 vs. uniprot
Match: D8LQ40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ40_ECTSI)

HSP 1 Score: 594 bits (1532), Expect = 1.450e-212
Identity = 321/343 (93.59%), Postives = 328/343 (95.63%), Query Frame = 1 
Query:    1 DEDDXXXXXXXXYEVDYANMNVSPEILRMLGASEEVIAAKEAEVSGVTSTWVPPTETGLEHSSAIANSAAVXXXXXXXXXXXXVERVFKAVGSFDKDAEDAADAGERAPVLKVKVAHAPEPVPKKRESKLPPKSEDNWSDDDGSEDSWDEASAIDGHAWWESGSDDEELETAAMSHNLRVALGLATAGEVATAETGGGGDGNGDWRPPSFAGLDNSKPLTTLMPLVIGQQKGLEIEYKKKMGEGEAEGGEGGDGDEEWSEEEGWDYEDVPDDEYLLDWSTSISPNLAKAMGRRASTEHKALALSEELSWKPPMSSGLKNSAPIIDSSQLSSFKNKTTRRLSLS 1029
            DED XXXXXXXXYEVDYA+MNVSPEILRMLGASEEVIAAKEAEVSGVTSTWVPPTETGLEHSSAIA+SAAV            VERVFKAVGSFDKDAEDAA AGERAPVLKVKVAHAPEPVPKKRESKLPPKSED+WSDDDGSEDSWDEASAIDGHAWWESGSDDEELETAAMSHNLRVALGLATAGEVATAETG GGDGNGDWRPPSFAGLDNSKPLTTLMPLVIGQQKGLEIEYKKKMGEGEAEGGEGGDGDEEWSEEEGWDYEDVPD+EYLLDWSTSISPNLAKAMGRRASTEHKALALSEELSWKPPMSSGLKNSAPII++SQLSSFKN+TTRRLSLS
Sbjct:   36 DEDXXXXXXXXXYEVDYASMNVSPEILRMLGASEEVIAAKEAEVSGVTSTWVPPTETGLEHSSAIADSAAVAIGGSGAPGGGGVERVFKAVGSFDKDAEDAAAAGERAPVLKVKVAHAPEPVPKKRESKLPPKSEDSWSDDDGSEDSWDEASAIDGHAWWESGSDDEELETAAMSHNLRVALGLATAGEVATAETGSGGDGNGDWRPPSFAGLDNSKPLTTLMPLVIGQQKGLEIEYKKKMGEGEAEGGEGGDGDEEWSEEEGWDYEDVPDEEYLLDWSTSISPNLAKAMGRRASTEHKALALSEELSWKPPMSSGLKNSAPIIEASQLSSFKNRTTRRLSLS 378
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BLAST of mRNA_Ecto-sp13_S_contig12914.2397.1 vs. uniprot
Match: D8LQ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ41_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 6.120e-48
Identity = 109/232 (46.98%), Postives = 136/232 (58.62%), Query Frame = 1 
Query:   37 YEVDYANMNVSPEILRMLGASEEVIAAKEAEVSGVTSTWVPPTETGLEHSSAI-ANSAAVXXXXXXXXXXXXVERVFKAVGSFDKDAEDAADAGERAPVLKVKVAHAPEPVPKKRESKLPPKSEDNWSDDDGSEDSWDEASAIDGHAWWESGSDDEELET-AAMSHNLRVALGLA--TAGEVATAETGGGGDGNGDWRPPSFAGLDNSKPLTTLMPLVIGQQKGLEIEYKKK 720
            YE+DYA++N +PE+LRMLGASE VIAAKEAEVS + STW PP E GLE+S+ I A+SAAV            V RV K VG FD+DA  AA   + AP  KV                               ++SWDEASA + HAWWESGS+DEE E  +AMS NL+  LGL   +  + A AE G   D   +W PPSFAGL NS+ +T L PLV+G  K  ++EY+ +
Sbjct:   27 YELDYASLNANPELLRMLGASERVIAAKEAEVSAIVSTWAPPPEPGLENSTTIIADSAAVVLGSGKAPCGSGVARVSKLVGGFDQDAAAAAATAQEAPGWKVS----------------------------SKDESWDEASA-NRHAWWESGSEDEEYEMMSAMSPNLQAVLGLRRPSGTDTANAEQG---DNKNEWHPPSFAGLSNSRRVTVLRPLVVGHGKMFDVEYRNR 226
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BLAST of mRNA_Ecto-sp13_S_contig12914.2397.1 vs. uniprot
Match: A0A6H5JS46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS46_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 3.340e-40
Identity = 103/221 (46.61%), Postives = 137/221 (61.99%), Query Frame = 1 
Query:  328 VLKVKVAHAPEPVPKKRESKLPPKSED-NWSDDDGSE--DSWDEASAIDGHAWWESGSDDEELET-AAMSHNLRVALGLATAGEVATAETGGGGDGNGDWRPPSFAGLDNSKPLTTLMPLVIGQQKGLEIEYKKKMGEGEAEGGEGGDGDEEWSEEEGWDYEDVPDDEY---LLDWSTSISPNLAKAMGRRASTEHKALALSEELSWKPPMSSGLKNSAPI 969
            V KVK+ H+PEPVP+ R SKL P  +D N SDD+  E  DSWDEASA +GHAWW+SGS+DEE E  +AMS NL+  LGL     +       G D   +W+PPSFAGL+NS  +  L PLV+G  K LE+E + +                     EGWDY+ +  D+Y   + +W+T++SPNLA+A+G  +S E KA ALS++LSW+ P S GL+NS  I
Sbjct:   22 VPKVKIVHSPEPVPRGRASKLLPVPQDSNLSDDNNDEENDSWDEASA-NGHAWWDSGSEDEEYEIMSAMSPNLQAVLGLRRPSGIDPPNEEQG-DNKNEWQPPSFAGLNNSTRVKVLRPLVVGHGKMLEVECRNRXXXXXXXXXXXXXXXX-XXXGEGWDYQVMSKDDYDSYVREWNTNVSPNLARALGCPSSMEQKAKALSKQLSWEAPASFGLRNSGYI 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12914.2397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ40_ECTSI1.450e-21293.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LQ41_ECTSI6.120e-4846.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS46_9PHAE3.340e-4046.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12914contigEcto-sp13_S_contig12914:981..4099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1032
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_006240.1
Cds size1032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.9787328-CDS-Ecto-sp13_S_contig12914:980..10781681462690.9787328-CDS-Ecto-sp13_S_contig12914:980..1078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12914 981..1078 +
1681462690.9947772-CDS-Ecto-sp13_S_contig12914:1455..16931681462690.9947772-CDS-Ecto-sp13_S_contig12914:1455..1693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12914 1456..1693 +
1681462691.0078776-CDS-Ecto-sp13_S_contig12914:2050..22151681462691.0078776-CDS-Ecto-sp13_S_contig12914:2050..2215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12914 2051..2215 +
1681462691.0231757-CDS-Ecto-sp13_S_contig12914:2651..29521681462691.0231757-CDS-Ecto-sp13_S_contig12914:2651..2952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12914 2652..2952 +
1681462691.0321364-CDS-Ecto-sp13_S_contig12914:3869..40991681462691.0321364-CDS-Ecto-sp13_S_contig12914:3869..4099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12914 3870..4099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12914.2397.1prot_Ecto-sp13_S_contig12914.2397.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12914 981..4099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12914.2397.1

>prot_Ecto-sp13_S_contig12914.2397.1 ID=prot_Ecto-sp13_S_contig12914.2397.1|Name=mRNA_Ecto-sp13_S_contig12914.2397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=344bp
DEDDEDDEDGEDYEVDYANMNVSPEILRMLGASEEVIAAKEAEVSGVTST
WVPPTETGLEHSSAIANSAAVAIGGGGAPGGGGVERVFKAVGSFDKDAED
AADAGERAPVLKVKVAHAPEPVPKKRESKLPPKSEDNWSDDDGSEDSWDE
ASAIDGHAWWESGSDDEELETAAMSHNLRVALGLATAGEVATAETGGGGD
GNGDWRPPSFAGLDNSKPLTTLMPLVIGQQKGLEIEYKKKMGEGEAEGGE
GGDGDEEWSEEEGWDYEDVPDDEYLLDWSTSISPNLAKAMGRRASTEHKA
LALSEELSWKPPMSSGLKNSAPIIDSSQLSSFKNKTTRRLSLS*
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mRNA from alignment at Ecto-sp13_S_contig12914:981..4099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12914.2397.1 ID=mRNA_Ecto-sp13_S_contig12914.2397.1|Name=mRNA_Ecto-sp13_S_contig12914.2397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12914:981..4099+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGAGGACGACGAGGACGACGAGGACGGCGAAGACTATGAGGTCGACTA
CGCGAACATGAATGTCAGCCCCGAGATCCTTCGCATGCTCGGCGCAAGGT
GACACGTGGTACTTCAAATGTGGTCCGCTGAGCTGCTTTCGTTTCGGGTT
TTATATCAGTACGAGGTATTGTCCGTTGTCTACATAGAAACGCACGCTTC
AGGGTTAATCGTCCTGTAGACTCGACCGATGCATCATGCCCGCAGAGTAA
TTTTGCCATGGTGAGTGAATTACTACGTTAACATTTGTGCGGTGGGGACA
CTCCCGCCTTTGAACTCGAACGCACACATACGTCATAGAGAAGTCGTGCG
TTTTGTCGTCACAACTGATATTGGTCGAACAACAACAAAAGCTGATTCCT
CATGGATTACACCTCCTCCATGATGCAATCCTGAGTACCCACGTATGGTT
CTTGTCGTCTTGCTGCCACTCCCAGCGAGGAAGTCATAGCCGCCAAAGAA
GCAGAGGTATCCGGCGTCACTTCGACGTGGGTCCCACCCACAGAAACGGG
CCTGGAGCATAGCTCCGCAATCGCGAACTCAGCCGCTGTTGCGATAGGAG
GGGGTGGTGCGCCGGGTGGCGGCGGCGTAGAGCGAGTCTTCAAAGCCGTC
GGTAGCTTCGACAAAGACGCCGAAGACGCTGCCGATGCAGGGGAGCGCGC
TCCAGTTTTGAAGGTCAGTTCCAAAGAACAGATTCCTGGCCATAGAGGCA
GCGTTCACGGAGTGAGGGCTCAAAGCGGGCGGTATGTGCTTGGTGGCGGC
ATCGACACCAACGCCGAACCTATCGCTATCCTTTCTTGGTTGAGCGAGAG
AGAAGAAGTGAAGACACGGCGAATCTCAAGGGAGCGAGCTGTTCCTTTGT
CATGCGCTCTGCATACCATGTGGGCCGAGCGAGAGCGTGAGGGGGTACAC
AAGCAGGTTACTTCATCTCCCAACTCGTCAAGGTCGTGAGCATAACCAAC
CACAGTCTGTATCTGATCCCAAGAATGGCCCTTTCGATGGCGATACTACC
TAACTAACCGTTGCCTGAAGGTCAAGGTCGCGCACGCCCCTGAGCCCGTT
CCGAAAAAGCGAGAGTCGAAGCTCCCTCCCAAGAGCGAAGACAACTGGTC
TGATGACGATGGATCGGAAGATTCGTGGGACGAGGCGTCTGCTATCGACG
GACACGCGTGGTGGGAGTCAGGCTCCGACGACGAGGTGCATTTTGCAGTG
AATGCGGCTACTGCTGCTGTAGGTTCCTGTGTCTGCACCGCAAGACCTGC
GTTGGTACCCTAGTTTTCTGGCTTTGTGTGCCCCATGCGTCAACCTTTTA
CCAGCTGTTGGGTTGGTTCGATGAAATTGTTGTCACTTCGCTCCAGCGTT
TGTTTTGCAATGCTACCGCCATGAAAGCAAGGAATGCTGTTATTTTGGAG
GCGCTACTATACCAAGCGCCCTCCGCTGACTCGTTGTCTGAAACGAGAGT
TTATCCCGACAAAATGCCGGCGGTGCAGGTCAGCATGTACTCCTTGCATT
GAGCGGAAGCACACTACAGTGCTGTCCGGGAACTAACTCTCACCCGGTCA
CCGCCGCCTGACCTGCTTCCGATTTACCTTTCGCCTTCTTGCCCCCCGGA
TGAGCGTGCTCTACTCGAAAGGAGCTTGAAACTGCAGCGATGTCTCATAA
CCTACGCGTGGCCCTAGGCCTGGCCACTGCAGGCGAGGTGGCCACCGCTG
AGACAGGGGGTGGAGGGGATGGAAACGGTGATTGGCGACCTCCATCCTTC
GCGGGACTGGACAACAGCAAACCCCTCACGACGCTGATGCCGCTGGTGAT
TGGCCAGCAGAAGGGCCTCGAGATTGAGTACAAAAAGAAGATGGGAGAAG
GGGAAGCGGAAGGGGGGGAAGGTGGAGATGGAGACGAGGAATGGTCGGAA
GAGGAGGGGTGGGACTACGAAGGTAAGTATGTTGTGCTTCAGTTGTTTCT
AGTACTGAGCAACCTTGACTTTTTTTCACCTCGAGCTTGTTTATACGCTG
TATGTGTTTTTTTCCTGGCCGCTCGTCTCGAGTAAAAAGGAAAGCCACAC
GTAGCTTTGTTCGTTGCCCCGTATCTTTGGAGGTACTCTGCTACTGTAGT
TTTGTCGATTCCCACTACAGCAGAAGCATCATGGCGGTCGTTGGTATTGC
CTGATGACCGGTTCCGAACCGAAAAAACTGATCAGGAAGGCATGTTTATC
CGAATGGCAAAAAAGGCGACTGTCCAGAGCAGAGCGGGAGGTCTTGCAGG
ATGCGCGTCGGACGTTGTGCATTACTGTGTTCAATCTTCAAGCCCTACTC
ACGCCTCGAGGACTTGGAGAAGAGTTCATTCATATGGTTGGCAGACCCGA
CGGCACATACACACACCCCGGACTCGAAGTAGTATGCCATATTGGACAGC
TTCTGTTGAAGCGGGTTGTTTGCAACTCGGCTTCCGAGCTTGAAAAATGA
GCTCTGTTTCCTCTTTGGAGGTTTCCTGCAAATCTCGCTGCAATCTGATC
TTTGTTTTCCAACTTGTTGTGCCAGCTAGGTACAATAGAGTAGCGCTTTC
ACTTCTCCTCTTCCCTGGGCCTATTGAGTAGGAGTCCTGTCCTCGGTGTC
TACCTCGGTTTGGACATGGCTTGGGACCACCGAATACCGCTTCGATGCCG
TGAAGGATGCTGGATGCAGAAAGCAAGTGTCGTCATTAGTACCAAGACGG
CAATAGCATCGACACACAACAACAACGACGACGAATAACACTACACGGTT
CGGTAAACACCTTCACGACATCCAGTCCGAACACAGGCATACTTTTTTTG
TGGTCCCATGTTTTGCTCTCCATGTTGCCTGTTTTCCAGACGTTCCGGAC
GACGAGTACCTGCTGGACTGGTCCACAAGCATCTCGCCCAACCTGGCGAA
GGCTATGGGCCGCCGCGCCTCTACGGAACACAAGGCTTTAGCACTCTCCG
AGGAACTCTCGTGGAAACCTCCGATGTCGTCCGGTCTGAAGAACAGCGCT
CCTATTATCGACTCGTCTCAACTCTCCTCCTTCAAGAACAAGACAACACG
AAGGCTAAGCCTCTCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12914:981..4099+

>mRNA_Ecto-sp13_S_contig12914.2397.1 ID=mRNA_Ecto-sp13_S_contig12914.2397.1|Name=mRNA_Ecto-sp13_S_contig12914.2397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12914:981..4099+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGAGGACGACGAGGACGACGAGGACGGCGAAGACTATGAGGTCGACTA
CGCGAACATGAATGTCAGCCCCGAGATCCTTCGCATGCTCGGCGCAAGCG
AGGAAGTCATAGCCGCCAAAGAAGCAGAGGTATCCGGCGTCACTTCGACG
TGGGTCCCACCCACAGAAACGGGCCTGGAGCATAGCTCCGCAATCGCGAA
CTCAGCCGCTGTTGCGATAGGAGGGGGTGGTGCGCCGGGTGGCGGCGGCG
TAGAGCGAGTCTTCAAAGCCGTCGGTAGCTTCGACAAAGACGCCGAAGAC
GCTGCCGATGCAGGGGAGCGCGCTCCAGTTTTGAAGGTCAAGGTCGCGCA
CGCCCCTGAGCCCGTTCCGAAAAAGCGAGAGTCGAAGCTCCCTCCCAAGA
GCGAAGACAACTGGTCTGATGACGATGGATCGGAAGATTCGTGGGACGAG
GCGTCTGCTATCGACGGACACGCGTGGTGGGAGTCAGGCTCCGACGACGA
GGAGCTTGAAACTGCAGCGATGTCTCATAACCTACGCGTGGCCCTAGGCC
TGGCCACTGCAGGCGAGGTGGCCACCGCTGAGACAGGGGGTGGAGGGGAT
GGAAACGGTGATTGGCGACCTCCATCCTTCGCGGGACTGGACAACAGCAA
ACCCCTCACGACGCTGATGCCGCTGGTGATTGGCCAGCAGAAGGGCCTCG
AGATTGAGTACAAAAAGAAGATGGGAGAAGGGGAAGCGGAAGGGGGGGAA
GGTGGAGATGGAGACGAGGAATGGTCGGAAGAGGAGGGGTGGGACTACGA
AGACGTTCCGGACGACGAGTACCTGCTGGACTGGTCCACAAGCATCTCGC
CCAACCTGGCGAAGGCTATGGGCCGCCGCGCCTCTACGGAACACAAGGCT
TTAGCACTCTCCGAGGAACTCTCGTGGAAACCTCCGATGTCGTCCGGTCT
GAAGAACAGCGCTCCTATTATCGACTCGTCTCAACTCTCCTCCTTCAAGA
ACAAGACAACACGAAGGCTAAGCCTCTCGTAG
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