prot_Ecto-sp13_S_contig12911.2396.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12911.2396.1
Unique Nameprot_Ecto-sp13_S_contig12911.2396.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length309
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12911.2396.1 vs. uniprot
Match: D7FS57_ECTSI (Chloride channel protein EriC n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS57_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 2.940e-110
Identity = 203/231 (87.88%), Postives = 208/231 (90.04%), Query Frame = 0 
Query:   78 MSMARKRHAAVAFGRTLLLRRGSTFFQRGTTDTEHSSSSRRSPSVRVNSAVDDSASAFPAFPSERVGVAAXXXXXXXXXASTRPPLQTLATDAAQSRSPSGSVAAAAAPTLSLEWGSEKLQKLRQYVFELPEDTAEESRFLIMAALLGVITGTAVTVFKTLIGAVKKFSYDDLIGRVPPGAASTYIGAAIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPWSPRR 308
            M+ ARKRHAA AFGRTLLL RGS FFQRGTTDTEHSSS  RSPSVRVN AVDDSASAFPAFPSER+ V A XXXXXXXX   RPP Q  AT+AAQS+SPSG VA  AA TLSLEWGSEKLQKLRQYVFELPEDTAEESRFLIMAALLGVITGTAVT+FKTLIGAVKKFSYDDLIGRVPPGAAST IGA IPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPW PRR
Sbjct:    1 MTSARKRHAAFAFGRTLLLGRGSPFFQRGTTDTEHSSSIGRSPSVRVNGAVDDSASAFPAFPSERISVEAAXXXXXXXX--XRPPWQAPATEAAQSQSPSGGVAXXAATTLSLEWGSEKLQKLRQYVFELPEDTAEESRFLIMAALLGVITGTAVTIFKTLIGAVKKFSYDDLIGRVPPGAASTCIGAFIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPWRPRR 229
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BLAST of mRNA_Ecto-sp13_S_contig12911.2396.1 vs. uniprot
Match: A0A836CI00_9STRA (Chloride channel (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI00_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.550e-14
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 0 
Query:  212 AEESRFLIMAALLGVITGTAVTVFKTLIGAVKKFSYDDLIGRVPPGAASTYIGAAIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPWSPRR 308
            A E  FL+++AL+G  TG  VT+FK  IG VKK+ Y D +G  P    S  + A IP+LGAIGVV+       + +GPGLGGL EEVD     +P R
Sbjct:    2 AREFNFLLLSALIGASTGGCVTLFKLAIGLVKKYLYGDFVGNFPI-EYSQLVVALIPILGAIGVVAARACTPKQDFGPGLGGLIEEVDNGTAANPLR 97
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BLAST of mRNA_Ecto-sp13_S_contig12911.2396.1 vs. uniprot
Match: A0A836C8J5_9STRA (Chloride channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.240e-7
Identity = 33/69 (47.83%), Postives = 40/69 (57.97%), Query Frame = 0 
Query:  240 GAVKKFSYDDLIGRVPPGAASTYIGAAIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPWSPRR 308
            G VK F Y D +GR P    S  + A IP+LG I VV++   L  + +GPGLGGL EEVD   P  P R
Sbjct:  197 GLVKNFLYGDFVGRFPM-MYSQLVVALIPILGGIAVVAIRSLLPKRDFGPGLGGLIEEVDNGTPVKPGR 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12911.2396.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS57_ECTSI2.940e-11087.88Chloride channel protein EriC n=2 Tax=Ectocarpus T... [more]
A0A836CI00_9STRA4.550e-1447.42Chloride channel (Fragment) n=1 Tax=Tribonema minu... [more]
A0A836C8J5_9STRA7.240e-747.83Chloride channel n=1 Tax=Tribonema minus TaxID=303... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 49..216
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 217..239
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 283..308
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 31..48
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 240..259
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..48
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 260..282
NoneNo IPR availableTMHMMTMhelixcoord: 260..282
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 217..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12911contigEcto-sp13_S_contig12911:2901..4659 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12911.2396.1mRNA_Ecto-sp13_S_contig12911.2396.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12911 2901..4659 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12911.2396.1 ID=prot_Ecto-sp13_S_contig12911.2396.1|Name=mRNA_Ecto-sp13_S_contig12911.2396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
MWLKSARGRGMKTGAQRTTSASASATILLMQTYVVSISALATIATSRAHP
AGALCTPTTPAFGRCCLISRRPSSAVVMSMARKRHAAVAFGRTLLLRRGS
TFFQRGTTDTEHSSSSRRSPSVRVNSAVDDSASAFPAFPSERVGVAAAAA
AAAAAGASTRPPLQTLATDAAQSRSPSGSVAAAAAPTLSLEWGSEKLQKL
RQYVFELPEDTAEESRFLIMAALLGVITGTAVTVFKTLIGAVKKFSYDDL
IGRVPPGAASTYIGAAIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDR
QVPWSPRR*
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