mRNA_Ecto-sp13_S_contig12908.2393.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12908.2393.1
Unique NamemRNA_Ecto-sp13_S_contig12908.2393.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12908.2393.1 vs. uniprot
Match: A0A6H5KKW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW1_9PHAE)

HSP 1 Score: 706 bits (1822), Expect = 5.370e-251
Identity = 386/438 (88.13%), Postives = 394/438 (89.95%), Query Frame = 1 
Query:    1 METETSQLIKGMDVDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQQHQQDMAITNSAFQGPPSPASTFGLQPKVSDFGQESWIPGAQQQVPIQAWPLTTSSEPTQRVNPNMLLPSGGKPRARKRHDEDEALVSKESAFPVMKRRSSTASISMNPSPPPTSSQQEEGLEKSHSFCVTTASAGWAPAVSQHQPGVARHGGSSQPPHEGGTASPPGGAIKVNTNVTSGTVRPPRISVFMSNSGRRGASGSGVVGGGXXXXXAAPAPSPSMMPTAPGSYSSSVLEPTMDRTASAQAHRLKDLRITMRDRSVAEKYVVDHNPAVVAMGSPHHLNSTSALLFGEDDQDDHFTATATMSATEPTAPSLRRASTVGALTIAGSEVMSTSPVLSSSGRIIQSCELSDRVGDCGQRRNLVCRVFGSGGSPFVRPASGG 1314
            METE SQLIKGMDVDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQQHQQ MAITNSAFQGPPSPAS F  QPKVSDFGQESW+PG QQ +PIQAWP T SSEPTQ VNPN+LLP GGKP+ARKRHDEDEALVSKES FPVMKRRSSTASISMNPSPPPTSSQQ+ GLEKSHSFCVTTASAGWAPAVS  QPGVARH GSSQPP +GG ASPPGGAIKVNTNVTSGTVRPPRISVFMSNSGR            XXXXXAAPAPSPSMMPTAPGSYS  VLEPTMDRTASAQA RLKDLRITMRDRSVAEKYVVDH PAVVAMGSPHHLNSTSALLF EDD   HFTATA+ SA  PT PSLRRASTVGALTIAGSEVMSTSPVLSSSGRIIQSCELSDRVGD GQRRNLVCRVFGSGGSPF+RPAS G
Sbjct:    1 METEPSQLIKGMDVDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQQHQQGMAITNSAFQGPPSPASMFAHQPKVSDFGQESWVPGEQQHLPIQAWPPTISSEPTQCVNPNLLLPIGGKPKARKRHDEDEALVSKESVFPVMKRRSSTASISMNPSPPPTSSQQQ-GLEKSHSFCVTTASAGWAPAVSHQQPGVARHVGSSQPPQQGGVASPPGGAIKVNTNVTSGTVRPPRISVFMSNSGRXXXXXXXXXXXXXXXXXAAPAPSPSMMPTAPGSYSGGVLEPTMDRTASAQAQRLKDLRITMRDRSVAEKYVVDHTPAVVAMGSPHHLNSTSALLFSEDD---HFTATASGSAAGPTVPSLRRASTVGALTIAGSEVMSTSPVLSSSGRIIQSCELSDRVGDGGQRRNLVCRVFGSGGSPFMRPASSG 434
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BLAST of mRNA_Ecto-sp13_S_contig12908.2393.1 vs. uniprot
Match: D7G817_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G817_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 4.750e-131
Identity = 216/251 (86.06%), Postives = 220/251 (87.65%), Query Frame = 1 
Query:    1 METETSQLIKGMDVDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQQHQQDMAITNSAFQGPPSPASTFGLQPKVSDFGQESWIPGAQQQVPIQAWPLTTSSEPTQRVNPNMLLPSGGKPRARKRHDEDEALVSKESAFPVMKRRSSTASISMNPSPPPTSSQQEEGLEKSHSFCVTTASAGWAPAVSQHQPGVARHGGSSQPPHEGGTASPPGGAIKVNTNVTSGTVRPPRISVFMSNSGR 753
            METE SQLIKGMD+DIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQ HQQDMAITNSAFQGPPSPASTFG QPKVSDFGQESWIPG QQQ+PIQAWPLTTSSEPTQRVNPN+LLPSGGKPRARKRHDEDEALVSKES FPV+KRRSSTASISMN SPPPTSSQQE GLEKSHSFCVTTASAGWAPAVSQ Q GVA                     IKV TNVTSGTVRPPRISVFMSNSGR
Sbjct:    1 METEPSQLIKGMDMDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIEDTQQQHHQQDMAITNSAFQGPPSPASTFGHQPKVSDFGQESWIPGGQQQLPIQAWPLTTSSEPTQRVNPNLLLPSGGKPRARKRHDEDEALVSKESVFPVIKRRSSTASISMNRSPPPTSSQQE-GLEKSHSFCVTTASAGWAPAVSQQQAGVAXXXXXXXXXXXXXXXXXXXXXIKVTTNVTSGTVRPPRISVFMSNSGR 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12908.2393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKW1_9PHAE5.370e-25188.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G817_ECTSI4.750e-13186.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12908contigEcto-sp13_S_contig12908:275..2485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1893
Hectar predicted targeting categoryother localisation
Exons2
Cds size1320
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.7510283-UTR-Ecto-sp13_S_contig12908:274..8471681462690.7510283-UTR-Ecto-sp13_S_contig12908:274..847Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12908 275..847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.7618318-CDS-Ecto-sp13_S_contig12908:847..17111681462690.7618318-CDS-Ecto-sp13_S_contig12908:847..1711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12908 848..1711 -
1681462690.7709546-CDS-Ecto-sp13_S_contig12908:2029..24851681462690.7709546-CDS-Ecto-sp13_S_contig12908:2029..2485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12908 2030..2485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12908.2393.1prot_Ecto-sp13_S_contig12908.2393.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12908 848..2485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12908.2393.1

>prot_Ecto-sp13_S_contig12908.2393.1 ID=prot_Ecto-sp13_S_contig12908.2393.1|Name=mRNA_Ecto-sp13_S_contig12908.2393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=440bp
METETSQLIKGMDVDIGMGLGDDLGGFEGFDAMFAEPNSTSDFFKFCEIE
DTQQQQHQQDMAITNSAFQGPPSPASTFGLQPKVSDFGQESWIPGAQQQV
PIQAWPLTTSSEPTQRVNPNMLLPSGGKPRARKRHDEDEALVSKESAFPV
MKRRSSTASISMNPSPPPTSSQQEEGLEKSHSFCVTTASAGWAPAVSQHQ
PGVARHGGSSQPPHEGGTASPPGGAIKVNTNVTSGTVRPPRISVFMSNSG
RRGASGSGVVGGGSSQQQAAPAPSPSMMPTAPGSYSSSVLEPTMDRTASA
QAHRLKDLRITMRDRSVAEKYVVDHNPAVVAMGSPHHLNSTSALLFGEDD
QDDHFTATATMSATEPTAPSLRRASTVGALTIAGSEVMSTSPVLSSSGRI
IQSCELSDRVGDCGQRRNLVCRVFGSGGSPFVRPASGGC*
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mRNA from alignment at Ecto-sp13_S_contig12908:275..2485-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12908.2393.1 ID=mRNA_Ecto-sp13_S_contig12908.2393.1|Name=mRNA_Ecto-sp13_S_contig12908.2393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2211bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12908:275..2485- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAACGGAGACATCGCAGCTGATTAAAGGGATGGACGTTGATATCGG
CATGGGGCTCGGGGACGACCTTGGCGGGTTCGAAGGTTTTGACGCCATGT
TTGCCGAGCCCAACAGCACGAGCGATTTTTTCAAGTTCTGCGAAATCGAG
GACACGCAACAACAGCAGCACCAGCAGGACATGGCCATCACCAACTCGGC
GTTCCAGGGGCCGCCATCACCGGCTAGCACGTTCGGCCTCCAGCCGAAGG
TGTCCGACTTCGGGCAGGAGAGCTGGATTCCTGGCGCGCAACAACAAGTC
CCGATTCAGGCTTGGCCTCTAACAACGTCAAGTGAACCCACACAACGCGT
GAACCCAAACATGCTCCTGCCGAGCGGGGGCAAGCCCAGAGCCCGGAAGA
GGCACGATGAGGATGAGGCGCTCGTGTCTAAGGAGTCGGCCTTCCCTGTG
ATGAAGGTATGTCGTTACGCCCATCATGCGTTGAAGTTGTGTTGTCTGCG
TTTTTTCCGTACTTGCGTGAGGTGAAGCCGAGCCCAAAAAACTCTGACTT
CGGGCGCCACGTTGCGGTCTGTGTGTGAGAGATGTTTTTTTCCGCTGGTT
TCCTCAAGTCCTTGCCCTGCCCAGCTTGTCGTACGTATTCCAAGTTTTTC
TTTGTGCAACGGATGATCTCTCCTCCCTGGCCAAGCTTGTGTCCTTATGC
ACCACCTGCTCATCCGCTACTCCTCTGTTCGTGTTCCCACGGTCTACTTT
GTGCTGTGCTCGCTTTGATGCTAGCGCCGGTCATCGACGGCATCCATTTC
GATGAACCCAAGTCCACCGCCAACATCGTCACAGCAAGAAGAAGGATTGG
AGAAAAGCCACAGCTTTTGCGTCACCACAGCCAGCGCGGGCTGGGCACCC
GCGGTATCGCAGCATCAGCCAGGCGTGGCAAGACACGGGGGGTCCAGTCA
GCCGCCGCATGAGGGGGGAACGGCGTCGCCGCCAGGTGGGGCGATAAAGG
TCAACACGAATGTGACGTCTGGCACCGTGCGCCCCCCTCGTATTTCGGTG
TTCATGTCCAACTCGGGTCGGCGCGGGGCGAGCGGCAGCGGGGTCGTCGG
CGGCGGTTCCTCTCAGCAGCAGGCCGCGCCCGCGCCTTCCCCCTCGATGA
TGCCAACCGCGCCCGGGAGCTACAGCAGCAGCGTGCTTGAGCCTACGATG
GACCGCACGGCCAGCGCGCAGGCCCATCGATTGAAGGACCTGCGCATCAC
CATGCGCGACCGGAGCGTGGCCGAGAAATACGTCGTTGACCACAACCCGG
CCGTCGTCGCGATGGGCTCGCCCCACCACCTCAACTCCACGTCGGCGTTG
CTCTTTGGAGAGGATGATCAGGACGACCACTTCACGGCAACGGCGACGAT
GTCGGCGACAGAGCCTACGGCACCGTCCCTGCGACGCGCGAGCACGGTCG
GAGCGCTCACGATCGCCGGCAGCGAGGTGATGTCGACGTCCCCGGTCTTG
TCATCCTCGGGAAGGATTATCCAGTCATGCGAGCTCTCCGACAGGGTCGG
AGACTGCGGTCAGCGGCGCAACCTGGTGTGCAGAGTTTTCGGCTCGGGCG
GGAGTCCCTTCGTGAGACCGGCGAGCGGCGGCTGCTAACTATTGGGATTC
ATTGCGGTGAGAGAAGAGAGCCGTTTTCTCGATGGGGGCTTGGTTTACGA
ACACAAGTGTCTATTTATCAGTGCCAAATTGGGCGCATGTTTTGTAGTCG
CGTCAAATTCGTTCGAACGTGCGTCTGGGGGGGGGGTATGATATACTGCA
TGTGTTTTGATCGAGAAACACACGACAACTTGAAGCTGCTCTCGATCAGA
AGTTGCAGCTATTTTACGAGAGAGATTTACTGGGTGAGAGCTGACGAGCG
CGGCGTTGTGTGCGTGGTTTGGCCTCGTGTCGATGGCTCTCCTTTGGTGC
TTGGCCATGTTTTGGCGGGCGGCACACCCTTCTTAATTTCGAATTCTCGG
TAGCCGTTCCAGCCGTTCCCTGAACAATTTCGTCTCTTTATGATTGTCGA
GGAAAGGCTACACCCGCGCACAGGGCAGCTGGGCAGCGTGGTCATGCCGT
TTATGGCCTGTGGTGTTGCCCGCGGGCTTGGATGCCTTTTATTCATACTA
TGTATACACTCGTCACAGGATTGATTTTCTGCTGACCAATGTCTGCGATG
GCTTAATGGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12908:275..2485-

>mRNA_Ecto-sp13_S_contig12908.2393.1 ID=mRNA_Ecto-sp13_S_contig12908.2393.1|Name=mRNA_Ecto-sp13_S_contig12908.2393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12908:275..2485- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAACGGAGACATCGCAGCTGATTAAAGGGATGGACGTTGATATCGG
CATGGGGCTCGGGGACGACCTTGGCGGGTTCGAAGGTTTTGACGCCATGT
TTGCCGAGCCCAACAGCACGAGCGATTTTTTCAAGTTCTGCGAAATCGAG
GACACGCAACAACAGCAGCACCAGCAGGACATGGCCATCACCAACTCGGC
GTTCCAGGGGCCGCCATCACCGGCTAGCACGTTCGGCCTCCAGCCGAAGG
TGTCCGACTTCGGGCAGGAGAGCTGGATTCCTGGCGCGCAACAACAAGTC
CCGATTCAGGCTTGGCCTCTAACAACGTCAAGTGAACCCACACAACGCGT
GAACCCAAACATGCTCCTGCCGAGCGGGGGCAAGCCCAGAGCCCGGAAGA
GGCACGATGAGGATGAGGCGCTCGTGTCTAAGGAGTCGGCCTTCCCTGTG
ATGAAGCGCCGGTCATCGACGGCATCCATTTCGATGAACCCAAGTCCACC
GCCAACATCGTCACAGCAAGAAGAAGGATTGGAGAAAAGCCACAGCTTTT
GCGTCACCACAGCCAGCGCGGGCTGGGCACCCGCGGTATCGCAGCATCAG
CCAGGCGTGGCAAGACACGGGGGGTCCAGTCAGCCGCCGCATGAGGGGGG
AACGGCGTCGCCGCCAGGTGGGGCGATAAAGGTCAACACGAATGTGACGT
CTGGCACCGTGCGCCCCCCTCGTATTTCGGTGTTCATGTCCAACTCGGGT
CGGCGCGGGGCGAGCGGCAGCGGGGTCGTCGGCGGCGGTTCCTCTCAGCA
GCAGGCCGCGCCCGCGCCTTCCCCCTCGATGATGCCAACCGCGCCCGGGA
GCTACAGCAGCAGCGTGCTTGAGCCTACGATGGACCGCACGGCCAGCGCG
CAGGCCCATCGATTGAAGGACCTGCGCATCACCATGCGCGACCGGAGCGT
GGCCGAGAAATACGTCGTTGACCACAACCCGGCCGTCGTCGCGATGGGCT
CGCCCCACCACCTCAACTCCACGTCGGCGTTGCTCTTTGGAGAGGATGAT
CAGGACGACCACTTCACGGCAACGGCGACGATGTCGGCGACAGAGCCTAC
GGCACCGTCCCTGCGACGCGCGAGCACGGTCGGAGCGCTCACGATCGCCG
GCAGCGAGGTGATGTCGACGTCCCCGGTCTTGTCATCCTCGGGAAGGATT
ATCCAGTCATGCGAGCTCTCCGACAGGGTCGGAGACTGCGGTCAGCGGCG
CAACCTGGTGTGCAGAGTTTTCGGCTCGGGCGGGAGTCCCTTCGTGAGAC
CGGCGAGCGGCGGCTGCTAA
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