mRNA_Ecto-sp13_S_contig10215.239.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10215.239.1
Unique NamemRNA_Ecto-sp13_S_contig10215.239.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Match: D7G7W9_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W9_ECTSI)

HSP 1 Score: 451 bits (1161), Expect = 3.370e-157
Identity = 218/232 (93.97%), Postives = 227/232 (97.84%), Query Frame = 1
Query:    1 QVIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVLSDIMQFKETDPKDLQDMYNRCHLEDMSTPEEYIKWSKVHGLEFVEFVDMAENLATHFGSVRDVLESRRGNLEGVEDDFIDNMVKGIEAWISAAQRNLICWGYLTFTKPEEASSDDDPTDAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE 696
            +VIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMV SDIMQFKETDPKDLQD+YNRCHLEDMSTPEEYIKW KVHGLEFVEFVDMAENLATH+GSVRDVL SRRGNLEGVED+FIDNMV+GIEAWISAAQRNLICWGY+TFTKP++ SSDD+ TDAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE
Sbjct:  119 KVIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVFSDIMQFKETDPKDLQDVYNRCHLEDMSTPEEYIKWGKVHGLEFVEFVDMAENLATHYGSVRDVLVSRRGNLEGVEDEFIDNMVRGIEAWISAAQRNLICWGYMTFTKPDDDSSDDNATDAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE 350          
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Match: A0A6H5L7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A2_9PHAE)

HSP 1 Score: 450 bits (1157), Expect = 7.140e-155
Identity = 218/232 (93.97%), Postives = 226/232 (97.41%), Query Frame = 1
Query:    1 QVIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVLSDIMQFKETDPKDLQDMYNRCHLEDMSTPEEYIKWSKVHGLEFVEFVDMAENLATHFGSVRDVLESRRGNLEGVEDDFIDNMVKGIEAWISAAQRNLICWGYLTFTKPEEASSDDDPTDAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE 696
            +VIVPGEKSFF+TGLP+ASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMV SDIMQ  ETDPKDLQD+YNRCHLEDMSTPEEYIKW KVHGLEFVEFVDMAENLATH+GSVRDVLESRRGNLEGVEDDFIDNMV+GIEAWISAAQRNLICWGYLTFTKP+EASSDD+ T AISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE
Sbjct:    6 EVIVPGEKSFFKTGLPNASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVFSDIMQLNETDPKDLQDVYNRCHLEDMSTPEEYIKWGKVHGLEFVEFVDMAENLATHYGSVRDVLESRRGNLEGVEDDFIDNMVRGIEAWISAAQRNLICWGYLTFTKPDEASSDDNATTAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE 237          
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Match: D7G5Z7_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z7_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 7.610e-118
Identity = 164/231 (71.00%), Postives = 199/231 (86.15%), Query Frame = 1
Query:    4 VIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVLSDIMQFKETDPKDLQDMYNRCHLEDMSTPEEYIKWSKVHGLEFVEFVDMAENLATHFGSVRDVLESRRGNLEGVEDDFIDNMVKGIEAWISAAQRNLICWGYLTFTKPEEASSDDDPTDAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE 696
            VI+PGEKS+F+TGLPDA C+VV SQDALLH+G ERHR++ EAAR+LKPGGRMV +D+MQ    DPKDLQ++Y R  L+D+ TP+ Y KW++ +GL FVEF D   ++ TH+ SV++VL S RG  +G+ED+FIDNM +G++AW+SAA+R LICWGY+TF KP++ SSDD+ TDAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE
Sbjct:  153 VIIPGEKSYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNHADPKDLQEVYERVRLQDLGTPKSYAKWAESYGLTFVEFSDRTPDMKTHYESVKEVLMSHRGTSDGMEDEFIDNMARGLDAWVSAAERGLICWGYVTFAKPDDDSSDDNATDAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE 383          
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Match: A0A6H5KC33_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC33_9PHAE)

HSP 1 Score: 348 bits (893), Expect = 2.300e-114
Identity = 165/232 (71.12%), Postives = 198/232 (85.34%), Query Frame = 1
Query:    1 QVIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVLSDIMQFKETDPKDLQDMYNRCHLEDMSTPEEYIKWSKVHGLEFVEFVDMAENLATHFGSVRDVLESRRGNLEGVEDDFIDNMVKGIEAWISAAQRNLICWGYLTFTKPEEASSDDDPTDAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE 696
            +VIVPGEKSFFETG+PDASCDVV SQDALLH+G ERHR++ EAARVLKPGGRMV +DIMQ KE DPKDLQ++Y R HL+DM+TPE Y KW K HGLEFVEFVDM +NLA H+G+VR+VL SRRGNL+GVED+FIDNM +G++AW SAA R+LI WG L FTKPE+AS+  +  +AI+ATA+G+Y+SDNAFNFY +VWGGEHIHVGLY+KL  E+AKL  ++RI KAS L  E
Sbjct:  146 KVIVPGEKSFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQSKEADPKDLQEVYQRIHLDDMATPESYAKWGKAHGLEFVEFVDMTDNLALHYGAVREVLMSRRGNLDGVEDEFIDNMARGLDAWTSAAGRDLIRWGCLVFTKPEKASNTQNAANAIAATAKGYYDSDNAFNFYRQVWGGEHIHVGLYNKLEGEDAKLEGVERITKASSLGTE 377          
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Match: A0A6H5L6E6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E6_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 6.440e-88
Identity = 125/180 (69.44%), Postives = 153/180 (85.00%), Query Frame = 1
Query:  157 MVLSDIMQFKETDPKDLQDMYNRCHLEDMSTPEEYIKWSKVHGLEFVEFVDMAENLATHFGSVRDVLESRRGNLEGVEDDFIDNMVKGIEAWISAAQRNLICWGYLTFTKPEEASSDDDPTDAISATAEGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAE 696
            MV +D+MQ    DPKDL+D+Y R  L+D+ TP+ Y KW++ +GL FVEF D   ++ TH+ SV++VL S RG  +G+ED+FIDNM +G++AW+SAA+R LICWGY+TF KPE+ASSDD+ TDAISATA+GWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRI+KASILNAE
Sbjct:    1 MVFNDVMQTNHADPKDLKDVYERVRLQDLGTPKSYAKWAESYGLTFVEFSDRTPDMKTHYESVKEVLMSHRGTSDGMEDEFIDNMARGLDAWVSAAERGLICWGYVTFAKPEKASSDDNATDAISATAKGWYNSDNAFNFYFKVWGGEHIHVGLYSKLNAEEAKLPVLDRIEKASILNAE 180          
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Match: A0A835YZA4_9STRA (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA4_9STRA)

HSP 1 Score: 176 bits (447), Expect = 4.840e-51
Identity = 79/162 (48.77%), Postives = 115/162 (70.99%), Query Frame = 1
Query:    1 QVIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVLSDIMQFKETDPKDLQDMYNRCHLEDMSTPEEYIKWSKVHGLEFVEFVDMAENLATHFGSVRDVLESRRGNLEGVEDDFIDNMVKGIEAWISAAQRNLICWGYLTFTK 486
            +V++PGE+SFFETG P  + D V SQD+LLH+G ER R++ EAARVLKPGG +V +DIMQ  + +  +L  +Y R HLEDM +P  Y  W++  GL+ V F D   NLA H+G+V+ VLE++R  L  +   ++DNM++G++AW++AA ++ +CWGY  F K
Sbjct:  130 KVLIPGERSFFETGEPAGAYDAVVSQDSLLHAGSERCRAIEEAARVLKPGGCLVFTDIMQSNDANTAELDAVYRRIHLEDMGSPASYQAWAERCGLKLVGFEDRTSNLAAHYGAVKGVLEAKRAELTNISPAYVDNMIRGLDAWVNAAGKSNLCWGYFLFRK 291          
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Match: D8LE22_ECTSI (Probable glycine-sarcosine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE22_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.270e-39
Identity = 68/162 (41.98%), Postives = 102/162 (62.96%), Query Frame = 1
Query:    1 QVIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVLSDIMQFKETDPKDLQDMYNRCHLEDMSTPEEYIKWSKVHGLEFVEFVDMAENLATHFGSVRDVLESRRGNLEGVEDDFIDNMVKGIEAWISAAQRNLICWGYLTFTK 486
            ++I+PGE+S+F+T +P AS D V SQDA  H+  E HR++ EAARVLKPGG M  SD MQ  + DP  L ++Y    +  +++P  Y +W   +GLE VEF D   N + H+  + DV+ S RG ++GV+D+F+D M     +W  AA+ +++ WG +   K
Sbjct:  105 KIIIPGERSYFDTEMPAASMDAVLSQDAFGHASTEHHRAIKEAARVLKPGGVMAFSDFMQSDDADPTKLGEVYQHIGISRLASPGLYEEWGNAYGLEPVEFDDRTSNFSVHYQHLVDVIASLRGTIKGVDDEFLDRMTSRYGSWCVAAEFDVLRWGVIVLKK 266          
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Match: A0A5J4YL55_PORPP (Dimethylglycine N-methyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YL55_PORPP)

HSP 1 Score: 129 bits (325), Expect = 3.540e-31
Identity = 61/155 (39.35%), Postives = 101/155 (65.16%), Query Frame = 1
Query:   25 SFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVLSDIMQFKETDPKDLQDMYNRCHLEDMSTPEEYIKWSKVHGLEFVEFVDMAENLATHFGSVRDVLESRRGNLEG-VEDDFIDNMVKGIEAWISAAQRNLICWGYLTFTK 486
            SF  TGL DAS DVV S D++LH+GPER + +AEAAR+LKP GR+V SD MQ ++ D + L+ +Y+R  L DM +P  Y+++   +GL    ++D+ ++++ H+  +  + E+RR  LE  +   ++D+M+ G++AW +A     + +G + F K
Sbjct:  394 SFTHTGLADASVDVVVSHDSILHAGPEREQVIAEAARILKPHGRLVFSDPMQCEDADSEALRAVYDRIQLADMGSPAAYVRFGAKYGLVHTGYIDLLDSMSRHYQVIAHITEARRPELENFISSAYLDSMLAGLKAWQTAVNAGQLRYGIMIFEK 548          
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Match: A0A8J9S2A7_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S2A7_PHATR)

HSP 1 Score: 124 bits (311), Expect = 7.320e-31
Identity = 65/162 (40.12%), Postives = 101/162 (62.35%), Query Frame = 1
Query:   19 EKSFFETGLPDASCDVVASQDALLHSGPERHRS-MAEAARVLKPGGRMVLSDIMQFKETDPKDLQDMYNRCHLEDMSTPEEYIKWSKVHGLEFVEFVDMAENLATHFGSVRDVLESRRGNLEGVEDDFIDNMVKGIEAWISAAQRNLICWGYLTFTKPEEAS 501
            E+S+    +PD S D+V S DALLH GPE  ++ + EAARVL+PGG MV  DIMQ +  DP ++Q +Y+R HL  + T   Y +     G    EF   +EN+A+H+G+VR+VL  ++G++  V + F++ M  G+  W   A +N++ WG++T  K E+ +
Sbjct:  125 EESYLGVSVPDESVDLVISMDALLHVGPEGQKTAIKEAARVLRPGGWMVFCDIMQQEVVDPVEMQPIYDRIHLTKLGTVSNYQECLSESGFTKFEFEPHSENVASHYGTVREVLIEKKGDI-AVSEAFLNKMEAGLAVWKELAPQNIV-WGFMTAQKTEKVN 284          
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Match: A0A5M8FVB4_9GAMM (Methyltransferase domain-containing protein n=1 Tax=Thiohalocapsa marina TaxID=424902 RepID=A0A5M8FVB4_9GAMM)

HSP 1 Score: 123 bits (309), Expect = 1.290e-30
Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   19 EKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVLSDIMQFKETDPKDLQDMYNRCHLEDMSTPEEYIKWSKVHGLEFVEFVDMAENLATHFGSVRDVLESRRGNLEG-VEDDFIDNMVKGIEAWISAAQRNLICWGYLTFTKPEE 495
            E SF      DAS D+V SQDA+LHSG  R R +AEAARVL+PGG +V +D MQ  +     LQ + +R HL  + +P  Y + +   GL  ++F++  + L TH+  V D L+  R  L G V D +I+ M+ G++ W+SA     +CWG L F KP +
Sbjct:  122 EGSFEAVPAADASFDLVWSQDAILHSG-HRDRVIAEAARVLRPGGELVFTDPMQADDCPADVLQPVLDRIHLSTLGSPAFYRQQAAKQGLRELDFIEHTDQLITHYSRVHDELQQNRERLRGLVSDTYIERMLAGLQHWVSAGNNGWLCWGILHFRKPAD 280          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10215.239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7W9_ECTSI3.370e-15793.97Putative sarcosine-dimethylglycine methyltransfera... [more]
A0A6H5L7A2_9PHAE7.140e-15593.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Z7_ECTSI7.610e-11871.00Putative sarcosine-dimethylglycine methyltransfera... [more]
A0A6H5KC33_9PHAE2.300e-11471.12Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A6H5L6E6_9PHAE6.440e-8869.44Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A835YZA4_9STRA4.840e-5148.77Putative sarcosine-dimethylglycine methyltransfera... [more]
D8LE22_ECTSI1.270e-3941.98Probable glycine-sarcosine methyltransferase n=1 T... [more]
A0A5J4YL55_PORPP3.540e-3139.35Dimethylglycine N-methyltransferase n=1 Tax=Porphy... [more]
A0A8J9S2A7_PHATR7.320e-3140.12Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A5M8FVB4_9GAMM1.290e-3041.25Methyltransferase domain-containing protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10215contigEcto-sp13_S_contig10215:1337..5945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size696
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-06_000010.2
Cds size396
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10215.239.1prot_Ecto-sp13_S_contig10215.239.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10215 1416..4176 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.968053-UTR-Ecto-sp13_S_contig10215:1336..14151681462515.968053-UTR-Ecto-sp13_S_contig10215:1336..1415Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10215 1337..1415 +
1681462516.0080962-UTR-Ecto-sp13_S_contig10215:4176..41901681462516.0080962-UTR-Ecto-sp13_S_contig10215:4176..4190Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10215 4177..4190 +
1681462516.0201561-UTR-Ecto-sp13_S_contig10215:5267..53631681462516.0201561-UTR-Ecto-sp13_S_contig10215:5267..5363Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10215 5268..5363 +
1681462516.0281594-UTR-Ecto-sp13_S_contig10215:5834..59451681462516.0281594-UTR-Ecto-sp13_S_contig10215:5834..5945Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10215 5835..5945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.9787903-CDS-Ecto-sp13_S_contig10215:1415..15491681462515.9787903-CDS-Ecto-sp13_S_contig10215:1415..1549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10215 1416..1549 +
1681462515.9884472-CDS-Ecto-sp13_S_contig10215:3236..33651681462515.9884472-CDS-Ecto-sp13_S_contig10215:3236..3365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10215 3237..3365 +
1681462515.9981163-CDS-Ecto-sp13_S_contig10215:4043..41761681462515.9981163-CDS-Ecto-sp13_S_contig10215:4043..4176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10215 4044..4176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10215.239.1

>prot_Ecto-sp13_S_contig10215.239.1 ID=prot_Ecto-sp13_S_contig10215.239.1|Name=mRNA_Ecto-sp13_S_contig10215.239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MLSYTPGRSGTGPWPRQPACSSPGAGWCSRTSCSSKRPTPRTYRICTTGA
TWRTCPPPRSTSSGARSTGSSSWSSSTWPRTSLRTSEVSGTCWSRGAATW
KAWRTILSITWSRESRLGYRRLSATLSAGAT*
back to top

mRNA from alignment at Ecto-sp13_S_contig10215:1337..5945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10215.239.1 ID=mRNA_Ecto-sp13_S_contig10215.239.1|Name=mRNA_Ecto-sp13_S_contig10215.239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10215:1337..5945+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGATCGTTCCCGGGGAGAAGTCGTTCTTTGAAACGGGACTGCCGGA CGCCAGCTGCGACGTAGTGGCCTCCCAGGATGCTCTCCTACACTCCGGGC CGGAGCGGCACAGGTCCATGGCCGAGGCAGCCCGCGTGCTCAAGCCCGGG GGCAGGATGGTGCTCTCGGACATCATGCAGTTCAAAGAGACCGACCCCAA GGACCTACAGGATGTGAGTTCGAGGAAGGGTTACGCATCGCAGTGGTCGG CAGTCAACCGACCCCCCCCCATGGCGGGGGAGGGGCATAGTGCAGCACAA GTCATAATGTCATACTGACAACCAACTCAGAGACATGTTAGCAGCTTTCT GTTCTGCCGGAGACAGAATAGCAGTATCAGTGTACAACAGATGTAGCTTC TTTTTTTTTTTTCTTTGTTTCGGCACCGTCACGTCCCTGGTGCAGACTGT TTACTTTCCACTGCCCTGCTGTAACAGCAGCACTGCTGCACTGCTGTACA CAGTCAACACTTTCAGCACCTGGGAGGGTGCACTATTATACCATGTGGGG TGTGTTCGGCCGGCGAGCTCTGGCGCTAGTCTACACCGTTCGTTGTTGGT ACTTCGTCATTTTTGACCCATGACGCCAGGCGGGGTATGTCACGCTTTTC TCTCGTTCTTCTGGCTACCCTTGACAAGACAAGCCTTTATGCTAGGTCAA CTCGAGACCCGATACGGAACCTATCTTGTTGCACATGTGACTGGCTTCGT GATAGAGGGGGGTACTCTTAGTCGTGCATGCTGCAGTCGTTAGACCATTG GCTTCGCGTCCCTACAAAGCCGGGACGAAGCACGCCGGGTCCTCACCGGA CCAGGCTCTCACATCACCAAGCGCGAAGCACCGCGAGGTTTTCGGCGAGT CGCATGAAGGATGTGCTGCATCCTGCTAAGGGTGTCGGCTTCTTGTGCTT AGTTCCTTGCGTATGGATGGCAGCTGCGTATGACTCGATTTATTTTCTGG TGCTTTCACTTCCAGAGACAGCTGTAAGCACTGTGTGACTGCCTCGAGCT TGCTTGACCAATTCAACACAACGTGGTGCGATCATTCCCTTTGCGCAGAG GGAGGGTTGTCGACCCCGCACAGCATAATCTACTCGACCACCATATTGGT TACCGCCAAAAAAAAACAGAGGTGAAAAAAAATGGGCTACCCTGGCTGCC GAGGTCACGAAGCGAGCGACTTATTCTACCACGTCGTTACCAACGACGAA AACCCAACCCCGATGGCACACACGGGCGGGGGAAGGCGGGGGGGGGGGGG AGGCAATCCGCAGAGACTGGGTGGCAATCCGCAGAGACTGAATGTGCGGT CGGTGCGGTGCGTGGCGTAAGCCAAGACAATCGAGAAGCGCCACACAAAG CGCTGCTGTGCTGTACTGCTGTACATATTGACTCATCCCGCGTCTGAATC AGGCGAAACACGCCAAGTTGTTGGTGGGCGAACCGAAAGTCTCGCAGGTT TTTTGTATCTATCGTCTTGTTGCCTCCTCACCTTGCTGCCGATGGTTGCC TCCCGCTATAGCTACATCAATGAGGAGAAGGGTATATCCCAATCCTTTGC TGTCTTACCCTGCCCGCGCGCTCAAGGAAAACGATGGTAGACGAACGAAC CCCTTTACTGCGGCAGAGCTGGTCTTTCTCCCAGTAGGATCCGATCACGC TTAGCCTAGCTTAGCTAGACTTCACATTCTCCCGGTGAGCGAGGAACTTG TTTTTTCCCTCCGGGACAGGCTCGTGTGCACAAACACGACTGGACTTCGG GCATTGACTCAGGGGTTTGCAGGTGAAAGTTGAAAACAAGGAAGAGGAGG CAGCACGGTGATTTTATTTAGCCATGCTGCGCGTCCATCATCATCCGCAG ATGTACAACCGGTGCCACCTGGAGGACATGTCCACCCCCGAGGAGTACAT CAAGTGGAGCAAGGTCCACGGGCTCGAGTTCGTGGAGTTCGTCGACATGG CCGAGAACCTCGCTACGCACTTCGGAAGTGTGAGCTACTTACATGAGTCA TCGTCCGGTCGGTAGATACAGTACCATAATTGTACCCGTTTGGTTGTAGC TCATAGGACGTAGCATTGCACGTGCAAGCTTAAGACACCGAAATTGCCCA ACGGATACAGTAGCACAGTCAGCGTCGACCAGTCTTATGGTTTGATTTCG GCGTATAGCTGACCAAGTTAGTGGTTTGCTTTCGGCTTCCGAAACCTTTA GTGGGTACGTGAACTGGTTGTTCACACAAACCACGTAGGTGGATTGCATG TACTACTGTAGAACGCACCGGCCGAGGACATGGAAACCCTCAGCGTACCA TCATGTTCCTGTCCATGTGTTCTCCTGTGAAACGTTACTGCCGTAGTGTA GCATCGATTTCTCGTCAATCACTGCTGCGCCTTGCTTTCTCTTCCAACCG TTTCGTTTGACTCGGGTGTTGCCTGTCCCGTTGGAAGGATAATTTGTCCC CCCTCCCCCCACTCTCTTCCTATTCCTCCCACTTCAAACGCAGCATTCCG TCCTCTTCTGCTCGTACCTTAATTCAAGTCAAGTCAATCTCTGTTTGAGC TAATTGACTACAAGTCTCATCTCTCTCCCTACCTCCCCCCTCCCCAGCAA CACGATACGGCACGGTAAACGAAATTGCCGACACATTTTTGTTCTCGTGT ACTGTAGGTCCGGGACGTGTTGGAGTCGCGGCGCGGCAACTTGGAAGGCG TGGAGGACGATTTTATCGATAACATGGTCAAGGGAATCGAGGCTTGGATA TCGGCGGCTCAGCGCAACCTTATCTGCTGGGGCTACTTGACCTTCACTAA GCCGGTGAGTGACCGCTCTCTGTCTGTTGTTGTTGGTCACCAGACCACGT ACGCGATGATGCGCTGTGTTTGTTCTGCCTTGTATAGCAGTGTTTCTTAA GCGTGTGGTCACAGCACTAGCGTACGCGGCACATTCTCCAAGCATAACGT ACATTCTCCGAGCATAACGCACGTCAACCGAAGTGTCCGTAGCGTATCCA ACGCAACACAGGGAACAGCCAGAAGATGTCGACGTTATTTGCATGCAAGC TCTCGCGGCCTCATCACGACCACGTACGCGTCCAGTGCCAGAGTACACCA AGTAATGATGTCTCAATTGATAAGACAGGGTATGCAACAAGCGACGCCGC TCGCCTTGCCCGGGAGAGGGGGGCGCAGGAAAACTGGAAGCCAACGCTTA GCAAATCGTAACCAAGTATACCCACACAAACAGTGAACAATCCCGCAGAT AAATCATCGAACCATGTCAACCCAAGTCAGTATTTTAAATCATCGCGGCG TCAGACTGCAGCGAGTCAGACTCTAGCAGCTGCGATACCACGCCAGATGA CACGTTTTTCTGCTCATGAGCCGCAACCCGCGGCTGGGGCAAGTGTGTCC CCCTGATACCCCGTTAGTAACCGTGCATGCTTCAAAGTACACGTACTCTA CTGAGGCCCGCACTACACCCGCTGCAGGTTGGGTCGTTTGGGCGCACTTA ATCCCAGGGATGACGCTATCACACCCAATCTTGATTACACCACATTTTTG TCACGACCCCTGTACCGTAGGTCGGGTCCTGCGAGTGCGGTTTTATCGCA CGCGCAACACAAGATATCACACCCTTTACAACACAATACCACACCCTTGT GATATTTATCTTAATTTAAGAATGATTTGTCATCACACGAGCGTGGTATT TCATGTCACGTGCAGCAGAAGGTTGTTGTGGTGTTTGTTTCATGTCGCCA AGTGTAGTATTTTAGTTGCACTCCGAAACCGCCAGGTTGTTGAAGGTAGT CGGCAATGCTGTTGCGGCTTCCTTGAACGTTTTTTTCATATTCCATCGGC GACACGAAACCATACTATCACGGCTGTACAGGAAGAAGCCTCGAGCGACG ATGACCCGACGGACGCCATCTCGGCTACAGCTGAGGGGTGGTACAACTCG GACAACGCCTTCAACTTCTACTTCAAGGTGCGCTGACCATATCTTCATGT TCACCTGGTTTTGTGTATATCTCCAGCGGCAACCTGCACATGCTCAGTAG CGTCCGCTGTCTCTTGCTAATTCTTTGGCGGAAACAGGCAGAGGGCGCGC GTGCCTCTTGCTCTTAAATTGAGCTAGGGCACATGTGCACTGCGTGGAGT CTGCTATCCGATGTTAATGTCCTCATGTTTGCTTTACGAGAGTCAACAAG ACTAGATAGAATGCGGTTTCCCTGTGTAGGTGCGCGCGTGCGTGTGGGAT CAGGCAAACCGGAACGGAGAGAGGAAGTGAACTCAATTAGACTACTGTTG CCAAGTAAGTCATGTTGCACTCTCGAAGGAGACCCGTTAAACTCGGACAC GTTGCGTCAAAGTCTTCTCATCACACACACCCTCCTTCCGCGTATGTGCT TTCTCCGTTCCCGAAATATCGGCGCCCCCTCCCGACTCCCAACCAAAGGT GTGGGGCGGAGAGCACATCCACGTCGGCCTGTACAGCAAGCTCAACGCGG AAGAAGCCAAGCTGCCCGTGCTGGACCGCATCAAGAAGGCCAGCATCCTG AACGCCGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10215:1337..5945+

>mRNA_Ecto-sp13_S_contig10215.239.1 ID=mRNA_Ecto-sp13_S_contig10215.239.1|Name=mRNA_Ecto-sp13_S_contig10215.239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10215:1337..5945+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTCCTACACTCCGGGCCGGAGCGGCACAGGTCCATGGCCGAGGCA
GCCCGCGTGCTCAAGCCCGGGGGCAGGATGGTGCTCTCGGACATCATGCA
GTTCAAAGAGACCGACCCCAAGGACCTACAGGATATGTACAACCGGTGCC
ACCTGGAGGACATGTCCACCCCCGAGGAGTACATCAAGTGGAGCAAGGTC
CACGGGCTCGAGTTCGTGGAGTTCGTCGACATGGCCGAGAACCTCGCTAC
GCACTTCGGAAGTGTCCGGGACGTGTTGGAGTCGCGGCGCGGCAACTTGG
AAGGCGTGGAGGACGATTTTATCGATAACATGGTCAAGGGAATCGAGGCT
TGGATATCGGCGGCTCAGCGCAACCTTATCTGCTGGGGCTACTTGA
back to top