mRNA_Ecto-sp13_S_contig129.2387.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig129.2387.1
Unique NamemRNA_Ecto-sp13_S_contig129.2387.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Match: D7FNH4_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH4_ECTSI)

HSP 1 Score: 968 bits (2503), Expect = 0.000e+0
Identity = 483/507 (95.27%), Postives = 490/507 (96.65%), Query Frame = 1 
Query:   16 VAGGEGGEAAPSRFKRVLDKATGKHYYYDRETKETFWTLADAPNSLSPNLPPEDSRKRRKTYGLPPTHVEAVAQNQGAVVWWKLSSSPEESEGPKPIGGNTKVTTTNAKDGNGRGGSGDRAVESSVAGDEEKCSPPVPIGFVVYRYRLDGREWHKKGATSVDDAKAVSTAVKALSNGLVYRFTVASRTVEGNSAESEPSVAVRPNEPLPEGWKEKFNAATGKSVYTNVKTGQTSSERPECNPYFVETDLFLRFTPEETETLSEEFRTKAEMQSSTLVAIDDIMDVLPRIGEPLREVEVVRRLKAEGWEGVKGGRDLPSVTYRQFLALLWGIKGPKSTRRSIGRRLWDAMVASVTPNSVSSRKLALIEQDPGKCMGNWEKLVHPAVRRAYFVNKDTGQASWTTPAEVKFFLNDKLRQDLLKTTFSEKELAGLQKAFAKMDLDGNGTIDAEELGLVLKSFGEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMSAVKNGRASLGWGRIN 1536
            VAGGEG EAAPSRFKRVLDKATGKHYYYD+ETKETFWTLADAPNS+SPNLPPED RKRRKTYGLPPTHVEAVAQNQGAVVWWKL SSPEE EGP+  GGNTK TTTN K GNGRGGSG RAVESSVAGDEEK SP VPIGFVVYRYRLDGREWHKKGATSVDDAKAVSTAVKALSNGLVYRFTVASRTVEG+SAESEPSVAVRPNEPLPEGWKEKFNA TGKSVYTNVKTGQTSSERPECNPYFVETDLFLRFTPEETETLSEEFRT AEMQSSTLVAIDDIMDVLPRIGEPLREVEVVRRLKAEGWEGVKGGRDLPSVTYRQFLALLWGIKGPKSTRRSIGRR+WDAMVASVTPNSVSSRKLALIEQDPGK MGNWEKLVHP VRRAYFVNKDTGQASWT PAEVKFFLNDKLRQDLLKTTFSE+ELAGLQKAFAKMDLDGNGTIDA+ELGLVLKSFGEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMSAVKNGRASLGWGRIN
Sbjct:   38 VAGGEGEEAAPSRFKRVLDKATGKHYYYDKETKETFWTLADAPNSISPNLPPEDPRKRRKTYGLPPTHVEAVAQNQGAVVWWKLPSSPEEREGPQHTGGNTKATTTNTKGGNGRGGSGGRAVESSVAGDEEKRSPLVPIGFVVYRYRLDGREWHKKGATSVDDAKAVSTAVKALSNGLVYRFTVASRTVEGDSAESEPSVAVRPNEPLPEGWKEKFNATTGKSVYTNVKTGQTSSERPECNPYFVETDLFLRFTPEETETLSEEFRTMAEMQSSTLVAIDDIMDVLPRIGEPLREVEVVRRLKAEGWEGVKGGRDLPSVTYRQFLALLWGIKGPKSTRRSIGRRVWDAMVASVTPNSVSSRKLALIEQDPGKRMGNWEKLVHPVVRRAYFVNKDTGQASWTMPAEVKFFLNDKLRQDLLKTTFSEEELAGLQKAFAKMDLDGNGTIDADELGLVLKSFGEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMSAVKNGRASLGWGRIN 544
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BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Match: A0A6H5L615_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L615_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 4.000e-59
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 1 
Query: 1135 MGNWEKLVHPAVRRAYFVNKDTGQASWTTPAEVKFFLNDKLRQDLLKTTFSEKELAGLQKAFAKMDLDGNGTIDAEELGLVLKSFGEAVPPGRLKALIREVDH 1443
            MGNWEKLVHP VRRAYFVNKDTGQASWTTP EVKFFLNDKLRQDLLKTTFSE+ELAGLQKAFAKMDLDGNGTIDA+ELGLVLKSFGEAVPPGRLKALIREV +
Sbjct:    1 MGNWEKLVHPVVRRAYFVNKDTGQASWTTPTEVKFFLNDKLRQDLLKTTFSEEELAGLQKAFAKMDLDGNGTIDADELGLVLKSFGEAVPPGRLKALIREVQN 103
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BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Match: A0A7S3ZU83_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZU83_9STRA)

HSP 1 Score: 168 bits (425), Expect = 9.630e-41
Identity = 157/546 (28.75%), Postives = 232/546 (42.49%), Query Frame = 1 
Query:   49 SRFKRVLDKATGKHYYYDRETKETFWTLADAPNSLSPNLPPEDSR------------------KRRKTYGLPPTHVEAVAQNQGAVVWWKLSSSPEESEGPKPIGGNTKVTTTNAKDGNGRGGSGDRAVESSVAGDEEKCSPPVPIGFVVYRYRL-DGRE-WHKKGATSVDDA---KAVSTAVKA--------------------------LSNGLVYRFTVASRTVEGNSAESEPSVAVRPNEPLPEGWKEKFNAATGKSVYTNVKTGQTSSERPECNPYFVETDLFLRFTPEETETLSEEFRTKAEMQSSTLVAIDDIMDVLPRIGEPLREVEVVRRLKAEGWEGVKGGRDLPS--VTYRQFLALLWGIKGPKSTRRSIGR----RLWDAMVASVTPNSVSSRK--LALIEQDPGKCMGNWEKLVHPAVRRA-YFVNKDTGQASWTTPAEVKFFLNDKLRQDLLKTTFSEKELAGLQKAFAKMDLDGNGTIDAEELGLVLKSF-GEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMSAVKNGR 1509
            + +    D  TGK Y+YD  T+E FW   D P      L  E +                   + ++ +  PP  V     +  A +WWK S         +P G                                    PPV  GF V R R  DG E W  KG   VD A   KA S A KA                          L+N   YRF V S    G S  S  S   R   PLPEGWK+       K+ Y NVKT QT+ +RP+ +P+ + T++FL+FT +E   L + F  K +   S  V++ +    LP +GE L   +++       W   +   D PS  ++Y  F   +  +K  +  R    R    +  D       P    + K  +A  E +  + +G W K+ HP ++ + Y+VN +TG+ S+ TP  +K+FL   L+++  K    + ELA ++  F  MDLDG+G ID  EL L++++  GE     +L+ ++ EVD D S  IDF+EF + M  +K G+
Sbjct: 3509 AEYASETDARTGKVYWYDVCTRERFW---DDPRPAQEALAAEIAEFERLHTGDTHSQLPLPLLRAKRGFPEPPRQVSGAGGDASARIWWKPS---------RPNG------------------------------------PPVK-GFSVERQRKRDGLETWEDKGTVYVDAAAQRKADSRAAKAAGRSLTKAELEAARSNQPPCALIVDELANDSWYRFRVYSHNDVGLSTPSNWSNDCRVQRPLPEGWKQVEPPDGSKTYYYNVKTRQTTWDRPDKDPFALPTEVFLQFTSDELTHLQDVFTDK-DYDRSNAVSLREFEAALPALGEVLSPTDLL-------WLFYQSDLD-PSAELSYAAFARAIATLKRARIERAPFWRWMPAKFRDMKEFMRRPRVPRAMKKLVAAKEDEIHERVGAWTKVPHPEIKGSTYWVNPETGETSYDTPEAIKYFLPQALQEEAKKWV-DDDELAEMETQFDAMDLDGSGAIDIGELKLLIRALTGETYSDAKLRGIMYEVDFDRSGEIDFDEFVLAMITLKKGK 3995
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BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Match: A0A7S3JUG7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUG7_9STRA)

HSP 1 Score: 158 bits (399), Expect = 7.650e-38
Identity = 115/408 (28.19%), Postives = 198/408 (48.53%), Query Frame = 1 
Query:  418 PPVPIGFVVYRYR-LDGREWHKKGATSVDD----------AKAV----------------STAVKALSNGLVYRFTVASRTVEGNSAESEPSVAVRPNEPLPEGWKEKFNAATGKSVYTNVKTGQTSSERPECNPYFVETDLFLRFTPEETETLSEEFRTKAEMQSSTLVAIDDIMDVLPRIGEPLREVEVVRRLKAEGWEGVKGGRDLPS-VTYRQFLALLWGIKGPKSTRRSIGRRLWDAMVASVTPNSVS----SRKLALIEQDPGKCM--GNWEKLVHPAVR-RAYFVNKDTGQASWTTPAEVKFFLNDKLRQDLLKTTFSEKELAGLQKAFAKMDLDGNGTIDAEELGLVLKSF-GEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMSAVKNGRASLGWGRI 1533
            PP+ +G+ V R R +D   W  KG+  +D           AKA+                +  V  L++   YRF V +    G S  S+ S  +R + PLP  W E       +S Y N KT ++S +RPE +PYF+ T+LF++F+  E   L E F T  +   S  +++++    LP  GE L   +++       W   +   D  + + +  F   +  +K  ++ R S+ RR+ D  +       +S    S     IE+D    +  G W +  HP +R R ++ N  TG+ S++ P ++ FF++D +R   ++   +   L   ++ FA +D D +G+IDA E+ LV++   GE +   R++ LIR+ D D +  IDF EF +++ +++ G+A   W R+
Sbjct:  190 PPI-LGYTVERQRCIDNENWRDKGSIYIDSQAQIIADTEAAKAIGKKLAKRKNKITPPPTAVLVDQLADDAKYRFRVYAHNARGKSVASKWSNEIRVSRPLPPAWIEVIPKDGSRSYYYNAKTFESSWQRPESDPYFLPTNLFMQFSAMEISHLKEVF-TVLDHDRSHAISLNEFESCLPEFGEYLSPSDLL-------WLFYQAHLDAKAEMNFIAFAQAIDTLKKARAERASLTRRILDHTITHTQKVKMSIFGQSADDIFIERDQAMKLRYGPWRRRRHPEMRSRIFWENTTTGECSYSMPHDIMFFISDDVR---MEANMNSTALKRYEQLFAAVDTDSSGSIDAGEMRLVIQRMTGENLADSRIRGLIRQFDLDRNGSIDFNEFILILISIQKGKAGQQWMRL 585
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BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Match: A0A7S2D3Y2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3Y2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.550e-20
Identity = 54/129 (41.86%), Postives = 79/129 (61.24%), Query Frame = 1 
Query: 1168 VRRAYFVNKDTGQASWTTPAEVKFFLNDKLRQDLLKTTFSEKELAGLQKAFAKMDLDGNGTIDAEELGLVLKSFGEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMSAVKNGRASLG-------WGRI 1533
            + R Y+ N   G+++W  P  +KF+++++L   LL+  FS+ ++A L+  F+ MDLD +GTID +EL ++L+  GE V   RLKALI EVD DGS  IDF+EF +MM  +     S         WGRI
Sbjct:    1 MNRPYYHNTLNGESTWKMPNSIKFWMSEELNIQLLEK-FSQADIAELEDKFSHMDLDCSGTIDEDELRMILEGMGERVSEARLKALIGEVDTDGSGEIDFDEFCIMMLTLMASDQSKSSSHYTGSWGRI 128
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BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Match: A0A7S0SWW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWW1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 5.460e-12
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:  463 GREWHKKGATSVDDAKAVSTAVKALSNGLVYRFTVASRTVEGNSAESEPSVAVRPNEPLPEGWKEKFNAATGKSVYTNVKTGQTSSERPECNPYFVE 753
            G+EW  KG+  +         ++ L+N  +Y FT+ ++ V+G+S+ES PS  V    PLP GW   F++ T +  Y N+K+ Q+S ERPE + YF++
Sbjct:    6 GKEWSYKGSIFLGPQDHKQYVIEGLTNDYLYCFTMKAKNVKGSSSESYPSEEVMIEAPLPAGWFRFFDSNTSRFYYANIKSKQSSWERPEKDSYFLD 102
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BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Match: A0A7S2K5I3_9DINO (Calmodulin n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2K5I3_9DINO)

HSP 1 Score: 72.4 bits (176), Expect = 5.910e-11
Identity = 33/74 (44.59%), Postives = 53/74 (71.62%), Query Frame = 1 
Query: 1270 LKTTFSEKELAGLQKAFAKMDLDGNGTIDAEELGLVLKSFGEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMS 1491
            ++  FS++ LA L++ FA  D DGNG++D +ELG+V++S G +     L+A++ EVD DGS+CI++ EF  +MS
Sbjct:   56 VEAQFSQERLAELREVFALFDADGNGSLDVKELGVVMRSLGLSPTEFELRAMVCEVDADGSECIEWPEFLHLMS 129
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BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Match: UPI0001CBA0D3 (calmodulin-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA0D3)

HSP 1 Score: 68.6 bits (166), Expect = 5.700e-10
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = 1 
Query: 1285 SEKELAGLQKAFAKMDLDGNGTIDAEELGLVLKSFGEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMSAVKN 1503
            +E++L+ L++AF+  D+DG+GTI+A+ELG VL+S G+      ++ +I EVD DGS  I+F EF +MM+   N
Sbjct:    9 TEEQLSELKEAFSLFDIDGDGTINAKELGTVLRSLGQNPTDKEVEEMIEEVDVDGSGSIEFPEFLMMMAGKFN 81
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BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Match: F0Y973_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y973_AURAN)

HSP 1 Score: 69.7 bits (169), Expect = 7.670e-10
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1 
Query: 1258 RQDLLKTTFSEKELAGLQKAFAKMDLDGNGTIDAEELGLVLKSFGEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMS 1491
            R+D       E ELA L +AF   D DGNGT++ EELG V++S G+ +    L  +   VD+D S CI F+EF V+MS
Sbjct:   46 REDAQPREIPEDELAELAEAFKMFDQDGNGTMNKEELGTVMRSLGQEITHENLDLIFASVDNDKSGCICFDEFLVLMS 123
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BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Match: B0D6G1_LACBS (Calmodulin n=2 Tax=Laccaria TaxID=29882 RepID=B0D6G1_LACBS)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-9
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 1 
Query: 1285 SEKELAGLQKAFAKMDLDGNGTIDAEELGLVLKSFGEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMS 1491
            S++++   ++AF+  D DG+GTI A+ELG+V++S G+      L+ ++ EVD DG+  IDFEEF  MMS
Sbjct:    5 SKEQIDSYREAFSLFDKDGDGTITAKELGIVMRSLGQNPTEAELQDMVNEVDKDGNGTIDFEEFLDMMS 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig129.2387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH4_ECTSI0.000e+095.27N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5L615_9PHAE4.000e-5994.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3ZU83_9STRA9.630e-4128.75Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3JUG7_9STRA7.650e-3828.19Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2D3Y2_9STRA5.550e-2041.86Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0SWW1_9STRA5.460e-1237.11Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2K5I3_9DINO5.910e-1144.59Calmodulin n=1 Tax=Brandtodinium nutricula TaxID=1... [more]
UPI0001CBA0D35.700e-1045.21calmodulin-like n=1 Tax=Saccoglossus kowalevskii T... [more]
F0Y973_AURAN7.670e-1044.87Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
B0D6G1_LACBS1.340e-944.93Calmodulin n=2 Tax=Laccaria TaxID=29882 RepID=B0D6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig129contigEcto-sp13_S_contig129:31398..36736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score967.6
Seed ortholog evalue2.3e-279
Seed eggNOG ortholog2880.D7FNH4
Model size1536
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006950,GO:0007275,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0016049,GO:0021700,GO:0022622,GO:0030154,GO:0032501,GO:0032502,GO:0040007,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0046872,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0050896,GO:0060560,GO:0071695,GO:0080147,GO:0090558,GO:0090627,GO:0099402,GO:1905392
Exons10
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-01_005450.1
Cds size1536
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig129.2387.1prot_Ecto-sp13_S_contig129.2387.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig129 31398..36736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.1839752-CDS-Ecto-sp13_S_contig129:31397..314991681462690.1839752-CDS-Ecto-sp13_S_contig129:31397..31499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 31398..31499 -
1681462690.1934752-CDS-Ecto-sp13_S_contig129:31933..320571681462690.1934752-CDS-Ecto-sp13_S_contig129:31933..32057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 31934..32057 -
1681462690.201309-CDS-Ecto-sp13_S_contig129:32224..323041681462690.201309-CDS-Ecto-sp13_S_contig129:32224..32304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 32225..32304 -
1681462690.2092688-CDS-Ecto-sp13_S_contig129:32980..331401681462690.2092688-CDS-Ecto-sp13_S_contig129:32980..33140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 32981..33140 -
1681462690.2172098-CDS-Ecto-sp13_S_contig129:33653..338171681462690.2172098-CDS-Ecto-sp13_S_contig129:33653..33817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 33654..33817 -
1681462690.2251456-CDS-Ecto-sp13_S_contig129:34304..344061681462690.2251456-CDS-Ecto-sp13_S_contig129:34304..34406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 34305..34406 -
1681462690.2330284-CDS-Ecto-sp13_S_contig129:34808..349311681462690.2330284-CDS-Ecto-sp13_S_contig129:34808..34931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 34809..34931 -
1681462690.2409725-CDS-Ecto-sp13_S_contig129:35442..355661681462690.2409725-CDS-Ecto-sp13_S_contig129:35442..35566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 35443..35566 -
1681462690.2489157-CDS-Ecto-sp13_S_contig129:35866..362271681462690.2489157-CDS-Ecto-sp13_S_contig129:35866..36227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 35867..36227 -
1681462690.263109-CDS-Ecto-sp13_S_contig129:36540..367361681462690.263109-CDS-Ecto-sp13_S_contig129:36540..36736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig129 36541..36736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig129.2387.1

>prot_Ecto-sp13_S_contig129.2387.1 ID=prot_Ecto-sp13_S_contig129.2387.1|Name=mRNA_Ecto-sp13_S_contig129.2387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=512bp
MAITAVAGGEGGEAAPSRFKRVLDKATGKHYYYDRETKETFWTLADAPNS
LSPNLPPEDSRKRRKTYGLPPTHVEAVAQNQGAVVWWKLSSSPEESEGPK
PIGGNTKVTTTNAKDGNGRGGSGDRAVESSVAGDEEKCSPPVPIGFVVYR
YRLDGREWHKKGATSVDDAKAVSTAVKALSNGLVYRFTVASRTVEGNSAE
SEPSVAVRPNEPLPEGWKEKFNAATGKSVYTNVKTGQTSSERPECNPYFV
ETDLFLRFTPEETETLSEEFRTKAEMQSSTLVAIDDIMDVLPRIGEPLRE
VEVVRRLKAEGWEGVKGGRDLPSVTYRQFLALLWGIKGPKSTRRSIGRRL
WDAMVASVTPNSVSSRKLALIEQDPGKCMGNWEKLVHPAVRRAYFVNKDT
GQASWTTPAEVKFFLNDKLRQDLLKTTFSEKELAGLQKAFAKMDLDGNGT
IDAEELGLVLKSFGEAVPPGRLKALIREVDHDGSDCIDFEEFTVMMSAVK
NGRASLGWGRIN
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mRNA from alignment at Ecto-sp13_S_contig129:31398..36736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig129.2387.1 ID=mRNA_Ecto-sp13_S_contig129.2387.1|Name=mRNA_Ecto-sp13_S_contig129.2387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig129:31398..36736- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATCACGGCAGTAGCTGGAGGCGAGGGAGGAGAGGCCGCACCTTC
TCGCTTCAAGCGCGTTCTGGACAAGGCTACCGGCAAGCACTACTACTACG
ACAGGGAGACCAAGGAGACGTTCTGGACCCTCGCCGACGCGCCAAACAGC
TTATCCCCCAACCTTCCGCCAGAAGACTCTCGGAAGCGGAGGAAGAGTGA
GCTATATGATGTTGACGTTGTTGCTGACATCGACGTTGTAGTCATTGTGG
TGGTTGTTGCTGCTTTGTCTCGTGACCATTCTTATCCTGTACCGAGTAGA
AAACGCGCGCCTACGTCCTATCGTAACCAGGTCATTAGAGTGTACGAGCA
TGCCGGCGGACGGTAGGTTGAGGAAAAACCTACATGGCCGATGCCATCAA
TGACGTTCCTCAGGTAGGCCGGGCACTTTTGTGGTAGTGCGCCGGTGTTT
GCATTCGCCCTGAGAAACATTTCCCCACATTACCCGCTCGGATGGGCGAC
AAAAAACAGCGTACGGGTTGCCCCCCACCCACGTCGAGGCCGTCGCTCAG
AACCAAGGGGCCGTTGTTTGGTGGAAACTGTCATCCTCACCAGAAGAAAG
CGAAGGGCCGAAGCCCATTGGGGGAAACACGAAAGTAACAACAACCAATG
CAAAGGATGGAAACGGACGAGGAGGAAGTGGAGATCGCGCCGTGGAAAGT
TCGGTGGCAGGCGACGAGGAGAAATGTTCGCCTCCCGTGCCGATTGGATT
CGTCGTGTACCGCTACCGACTGGATGGCCGCGAGTGGCACAAGAAAGGCG
CTACGAGCGTAGACGACGCCAAGGCCGTGTCCACCGCCGTGAAAGCGTTA
TCAAACGGGCTTGTCTACAGGTGACGTTACTCTCAAATATCCGGATTGAA
TAGGGCGGCTTGTGCTATGATTTCTCTTGCACTGGTGTAGTCGCCGCCGT
TTCTCACGGACTAATTCATGACTGTATTTTTTTTTTTGTGTCCTAGACCC
GTTCGAATAGTCTTGTTGCCCCGAACTCTCTTGACTCATGTTACGCTTCT
CAAAGGCACGGCAAGTGCACGGTTCCTTGAATCACTTAGAAATTCTTCGT
GTCTGTTCCAAGCGATCCTCTTTTGGTCTTCTTGTTGTCGTCTTTTCCAC
ACCCTTCTCCCCGACGACAGGTTCACGGTCGCTTCGAGGACTGTCGAAGG
CAACAGCGCGGAGAGCGAACCCTCCGTGGCCGTGCGTCCGAACGAGCCGC
TTCCCGAGGGTTGGAAGGAAAAGTTCAACGCCGCCACCGGCAAGGTACAC
CTGCATGCACAGCCTTTTATACTACGACGAAGACAATGGTTGCTACACAT
TGTGGTGGGGACCCCTGGTTGGTTCCTTCGAAAGGAAAAACGTGGAGTCA
AGCAACGAACTCATCAACAAACTCCGGCGTTCACGGAGAGCAGGGCGATG
CGGGCGGGGCGAACGAAAGCAAAGTGTACCACAACCACTCTTCCTGGCAA
GCAGGTTATTGATTGCCATTGGCTTCTTGACAAGATGCGTCGACATTCTC
ACCACCGCGTTTCAGATCGTGCAAAGGTGCTCCTGTGGCACACAAAATAT
CACAACGGTTTCAAAAGCATCGTTAACTCTCAAGTGTTTCTGGAAGGCAA
GGTTCAATGCCATAACTATTGCTGTCAAAGGTGTGTCTCGCTGTTGTAGA
GTCTCAACCGGGTTCTTCCGAGAACATTTGCCTGTCCTTGCTGAGGACAC
CTCAGAACGAAGCCAGTGTCATTTCTCGTGCTTCTTTACCACAAACCACA
CGCAGTCGGTGTACACGAACGTCAAGACGGGCCAGACGAGCTCGGAAAGG
CCGGAGTGCAATCCTTACTTTGTCGAGACCGACCTGTTCCTCAGGTTTAC
GCCGGAGGAAACAGAGACCCTTTCCGAGGTAAGCTTGTTACACACTTGCA
TGGGCGGCCTGGCGCATATCAACACCGCAACTGGACTCAAGGAAAGAACA
ACTCCAACAGGCACATTACCTATGTTCTCACAATCTGTCCCTTCGCTGCA
TGCTCCCAGTTGTTCTAGAGATTCCCTCCGATCCGTAGCATGCTTTCCTC
GCACGCGAATTCACGCGTGCGCGAAACTATTGTGGACGGAATCCAGTCAC
ACTTTCATCCACATGGAGTGTGCCATGGTGTAGCTTCGGTGGGTGTGAAG
CCAACTGTAGGCACGAAGGCCTGAGCTGAGGGCCTACTCTCGTTTATTCA
TCGATCGTTCTATCGTATTTGCCTTGCTTTCTCCATGCCTTGCCCATCTA
TACATGTACATCTCCGAAAAACAAAAGCAGGAGTTCCGAACAAAAGCGGA
AATGCAGAGCAGCACGTTGGTGGCGATCGACGACATAATGGACGTGCTTC
CGAGGATAGGAGAGCCTCTCCGCGAGGTCGAGGTGTGTGTATGTGTGTGT
CTCTTTTCTCCACCTCCATCTGTTTCGCTGTTGGCAACAACATCACCCGA
AGTGCCGTTTCGCCGCTGCTGCCCGCCGTAACGAGGTAAATGAAACCGAG
GTAAAAACAGTCCGAACCAGCGGAGTTACGTCTCGAAAGTCCCTGTGAGG
TACTATTCTAATAGTAAATCAATTCTCGTTCCTATCGAGCGTTGTGTAGA
GCATCTGGTACATCACAAGTTGAGTGATAGCCACCAGAAGTATCTTTTGT
TGAAGCCGCGTACGCAACGGGTACAGTTGCATTGCTTGCAAAATTCCATA
TCACCTCTCAAATAAGTGATGGATCATCGACGCGTTCTAAATCAGATCGC
AGAACGCTCTTCTGTGGTGTCTTTCAGTCATTCACGACGTATCGCATTAC
AGCTGTGTTTCTCTGTTTATGTCGCAGTGAGTGACGCTTTGTTTATGGTC
TTTCACTTTTTGGAGTCAGGTGGTACGACGGCTGAAGGCGGAAGGCTGGG
AAGGCGTGAAGGGCGGGAGGGACTTGCCCAGCGTGACCTACAGGCAGTTC
TTGGCCCTGCTGTGGGGCATCAAGGGCCCCAAGAGCACGAGGAGGTCCAT
CGGGAGGCGGCTGTGGGACGCCATGGTAGCGAGGTATGCTTGCGTGCATT
AACTGCTCTCTCCGCAAGCTGCCCTGTTCCTTTACCCTCAACAACTATTT
GCAAGATTCTGGATTTTAGTCGCCGTCGCCATCGTTCTGCTAGGTTTTGC
AGGGGCACCGTCCTGCTCGATCCTGAACATCGTTCACGCTGTGGGCGGTT
TGTTGTTTGGGTCTTCGCGTGCCAAAGTTGGCTCGTTTATATCCAACATT
ACTAATCTCCAAACACAGTCGGAAGCGGTGGGTGTCCGTCCTTGACTTCT
TTTGGCTGGACAGGCTGGATCAGATCTCTTCGGCGATAGTGGTCGCATCT
TTCCCTGAATTTTGACGAGAGGGGTCTCTTTGGCAATGGTGGCCGCATTT
TCCCCTAAATTTTGGCAAAGGGGTGTAGCGTGAAGCTCTTCCGCAGTCGT
CGTTAGAAGGTCGATACCCACACGATGCATTCGGTGCTTTTGCTCAACCG
GCTAAAACAAGCGTTCGCTCGTTCGCGTCGGATGCTTCCTTGTCAGCGTG
ACGCCGAACAGCGTGTCCTCGAGAAAGCTAGCCCTGATAGAACAAGACCC
CGGGAAGTGCATGGGCAACTGGGAAAAACTCGTGCACCCCGCCGTCCGGC
GAGCGTACTTCGTCAACAAGGACACCGGCCAGGCGTCTTGGACGACGCCT
GCGGAGGTAGGAACAGCCAGGGGGTTGAGCCAAAGGAAATCGTTGCCATG
CAACACCACGACAAAGAGCATTACGCTCCGTGGGCCGGCGAAAACTCGTA
CTTGTACACAACAAAAGGGTTCCAAGGTCGAACCGGAAGAATACCACGCC
CCAAATGAAGTGCATTCCCGTCGGCACATGGTTCGGATGGTGGCACCCGA
ACTTTGGTGGACCTATGTAACTCTGAACTCAAGACGCGCTCCACAACCCC
GCGTAGTACGATAATTGCCTTGCTGCTTGCCTTCTTTGTGATTGTAACAG
TAGCTGGCTGTGATTATCGAGAAGAGAAAAAAGCAGCACCATTCCTAGTC
TTTATGAGTCAGGTCTGCGTGTGTGCATTTTTTTGTGTCTCACGTAGATA
TGCTTGTCATACAGTCAACTGGCTTCTTTTCGCATATATCGGCCCTGATG
TTGTCTTCGTTGAGCTGATGTTAACACATCTTGCAGCAGCTGTACCCTTG
ATCTCTATGTCTTCAACGAAGTCAACTAGAAAAATTCGACCTTAGCTCAT
GAGACGATTTTGTGTGCACGTGATAAAGGCTCGTTCAGAGCTCATCTCCA
GGACTCCTTCTGTTTTTTCTCGTTTAACCCGGTGCTTTTAACGAAAACAA
GACCATCATCGCCTTGGAACCGTGTTGCGTAGGTGAAATTCTTCCTCAAC
GACAAACTAAGGCAGGACCTCCTGAAGACGACCTTCAGCGAGAAAGAGCT
GGCGGGTCTGCAGTAAGTGCGTTGGAAAAAAAATCTTCACGTACGTTCCT
TTCACGGTACACCTGCGCAGAAGAGTATTAAGTGGTGCGAAGAAGACCCC
TCGCCGACGCAGACCCGTCTGTCTGCAGGTGATAGGAGAACTCCATGTCC
ACATGGTCCTTATTTGTGTTCGTGTACAGGAAAGCCTTCGCCAAGATGGA
CCTCGACGGCAACGGCACCATAGACGCCGAGGAGCTAGGCCTAGTCCTCA
AGTCTTTCGGAGAGGCCGTACCCCCAGGACGTCTCAAAGCTCTTATCCGC
GAGGTACAGAACGTCATGCTGGTGTGCAGCAGGAACACAATTCTCTTCGC
ATATTTTGCGCCAGATATAAATGCCTCGGAGCTCCTCCATACTGCTTCTT
CTCTACTTCCGTCCACCATTAAAAAGCACTTCCATCGTTTGAGAAAGTTC
TCGGCTGGAGCATGCTTCGTACGGATGCTAGGATGGCCTTCGGTACAGCC
GCAGGCGCGTGGCAGGCTCACTGAAAGATCGAACCCGTCTCGAGGGCTGG
GAAAGGGGACGAGCGTTCAACATCACCGTCCCGGATGAGGTGGTTTAGCA
TCTTGTCGAAACTGCATGGCATGCACCCTAAACCTATTTTCTCCTCTGCG
GTAGTCGATCATGCGTGTTGCGGCAAATATGCTGATGCCCAAACTCTTCG
TATGTCATCTCACTGTCGGTGTGCTTTGTTTTCAAAGGTCGACCATGACG
GCAGCGACTGCATCGACTTCGAGGAATTCACCGTGATGATGTCCGCGGTT
AAGAACGGCAGAGCCAGCCTTGGGTGGGGCAGAATAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig129:31398..36736-

>mRNA_Ecto-sp13_S_contig129.2387.1 ID=mRNA_Ecto-sp13_S_contig129.2387.1|Name=mRNA_Ecto-sp13_S_contig129.2387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig129:31398..36736- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATCACGGCAGTAGCTGGAGGCGAGGGAGGAGAGGCCGCACCTTC
TCGCTTCAAGCGCGTTCTGGACAAGGCTACCGGCAAGCACTACTACTACG
ACAGGGAGACCAAGGAGACGTTCTGGACCCTCGCCGACGCGCCAAACAGC
TTATCCCCCAACCTTCCGCCAGAAGACTCTCGGAAGCGGAGGAAGACGTA
CGGGTTGCCCCCCACCCACGTCGAGGCCGTCGCTCAGAACCAAGGGGCCG
TTGTTTGGTGGAAACTGTCATCCTCACCAGAAGAAAGCGAAGGGCCGAAG
CCCATTGGGGGAAACACGAAAGTAACAACAACCAATGCAAAGGATGGAAA
CGGACGAGGAGGAAGTGGAGATCGCGCCGTGGAAAGTTCGGTGGCAGGCG
ACGAGGAGAAATGTTCGCCTCCCGTGCCGATTGGATTCGTCGTGTACCGC
TACCGACTGGATGGCCGCGAGTGGCACAAGAAAGGCGCTACGAGCGTAGA
CGACGCCAAGGCCGTGTCCACCGCCGTGAAAGCGTTATCAAACGGGCTTG
TCTACAGGTTCACGGTCGCTTCGAGGACTGTCGAAGGCAACAGCGCGGAG
AGCGAACCCTCCGTGGCCGTGCGTCCGAACGAGCCGCTTCCCGAGGGTTG
GAAGGAAAAGTTCAACGCCGCCACCGGCAAGTCGGTGTACACGAACGTCA
AGACGGGCCAGACGAGCTCGGAAAGGCCGGAGTGCAATCCTTACTTTGTC
GAGACCGACCTGTTCCTCAGGTTTACGCCGGAGGAAACAGAGACCCTTTC
CGAGGAGTTCCGAACAAAAGCGGAAATGCAGAGCAGCACGTTGGTGGCGA
TCGACGACATAATGGACGTGCTTCCGAGGATAGGAGAGCCTCTCCGCGAG
GTCGAGGTGGTACGACGGCTGAAGGCGGAAGGCTGGGAAGGCGTGAAGGG
CGGGAGGGACTTGCCCAGCGTGACCTACAGGCAGTTCTTGGCCCTGCTGT
GGGGCATCAAGGGCCCCAAGAGCACGAGGAGGTCCATCGGGAGGCGGCTG
TGGGACGCCATGGTAGCGAGCGTGACGCCGAACAGCGTGTCCTCGAGAAA
GCTAGCCCTGATAGAACAAGACCCCGGGAAGTGCATGGGCAACTGGGAAA
AACTCGTGCACCCCGCCGTCCGGCGAGCGTACTTCGTCAACAAGGACACC
GGCCAGGCGTCTTGGACGACGCCTGCGGAGGTGAAATTCTTCCTCAACGA
CAAACTAAGGCAGGACCTCCTGAAGACGACCTTCAGCGAGAAAGAGCTGG
CGGGTCTGCAGAAAGCCTTCGCCAAGATGGACCTCGACGGCAACGGCACC
ATAGACGCCGAGGAGCTAGGCCTAGTCCTCAAGTCTTTCGGAGAGGCCGT
ACCCCCAGGACGTCTCAAAGCTCTTATCCGCGAGGTCGACCATGACGGCA
GCGACTGCATCGACTTCGAGGAATTCACCGTGATGATGTCCGCGGTTAAG
AACGGCAGAGCCAGCCTTGGGTGGGGCAGAATAAAC
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